BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G59780.1
Length=2721
Score E
Sequences producing significant alignments: (Bits) Value
Ahg907505 jgi|Araly1|907505|Al_scaffold_0002_586 3097 0.0
Ahg891414 jgi|Araly1|891414|Al_scaffold_0007_3400 1441 0.0
Ahg475351 jgi|Araly1|475351|fgenesh2_kg.2__481__AT1G59620.1 207 3e-52
Ahg907496 jgi|Araly1|907496|Al_scaffold_0002_577 204 3e-51
Ahg914885 jgi|Araly1|914885|Al_scaffold_0001_5139 180 6e-44
Ahg907562 jgi|Araly1|907562|Al_scaffold_0002_643 154 3e-36
> Ahg907505 jgi|Araly1|907505|Al_scaffold_0002_586
Length=2703
Score = 3097 bits (1677), Expect = 0.0
Identities = 2392/2728 (88%), Gaps = 85/2728 (3%)
Strand=Plus/Plus
Query 16 ATGGTTGATTCAATTGTATCGTTCGGTGTTGAAAAGCTTTGGAAACTCCTGAGCCAAGAA 75
|||| ||| ||||||||||||||||||||| |||||| ||| ||||| ||||| ||||
Sbjct 1 ATGGCTGACGCAATTGTATCGTTCGGTGTTGGAAAGCTCTGGGAACTCGTGAGCGAAGAT 60
Query 76 TATGAGCGATTCCAGGGAGTTGAAGAGCAAATTACGGAGCT-AAGAGATGATCTGAAGAT 134
||| ||||||| | ||||||||||||||||||||| |||| ||||| ||||||||||||
Sbjct 61 TATCAGCGATTTCGGGGAGTTGAAGAGCAAATTACTCAGCTAAAGAG-TGATCTGAAGAT 119
Query 135 GTTAATGGCCTTTCT-ATCTGATGCAGATGCAAAGAAACAAAC-CCGTGCACTTGCAAGA 192
||||||| ||||||| | ||| || ||||||| ||||||||| | |||||||||||||
Sbjct 120 GTTAATGTCCTTTCTGA-GTGACGCGGATGCAAGGAAACAAACAAC-TGCACTTGCAAGA 177
Query 193 AACTGCCTTGAAGA-GATAAAGGAAATCACTTATGATGCTGAGGATATAATAG-AA-ATC 249
|||||| | || || | |||||||||||||||| ||||| |||||||||| | || ||
Sbjct 178 AACTGCGTAGACGACG-TAAAGGAAATCACTTACGATGCCCAGGATATAATTGAAACATA 236
Query 250 T-TTCT---TC--TAA--AA--G---GCAGT-G--TC-----A-ACATGAGAAGCCTTGC 287
| |||| | || || | | ||| | || | |||||||||| |||||
Sbjct 237 TCTTCTAAAGCGAGAACGAAGTGAAAGTAGTGGCATCAAGAAACACATGAGAAGTCTTGC 296
Query 288 TTGCTTTCCAGGTGGTCGTAGGGAGATTGCCTT-GCAAATCACAAGCATCAGTAAGAGGA 346
|||| ||| | ||||||||||| ||| |||||| | ||||||||||||| |||||||| |
Sbjct 297 TTGCATTCAAAGTGGTCGTAGGAAGACTGCCTTAG-AAATCACAAGCATTAGTAAGAGAA 355
Query 347 TCTCCAAGGTTATCCAAGTTATGCAGA-ATTTAGGCATAAAATCAG-ACATTATGGACGG 404
||||||| || ||||| ||||||| || |||| || ||| |||| | ||||||| || ||
Sbjct 356 TCTCCAAAGTGATCCAGGTTATGC-GAGATTTTGGGATACAATC-GAACATTATTGAAGG 413
Query 405 TGTGG-ATTCGCATGCTCAAC-TGGAAAGGAAAAGGGAGTTGCGTCATACATTTTCTAGT 462
|| || ||||||| |||| || | || || |||||||| |||||||||||||||| | |
Sbjct 414 TG-GGTATTCGCAGGCTCTACAT-GATAGAAAAAGGGAAATGCGTCATACATTTTCCAAT 471
Query 463 GAATCTGAGAGCAATCTTGTTGGTTTGGAGAAAAATGTTGAGAAATTGGTTGAA-GAATT 521
|| ||||| |||||||||||||||||||||||||||||||||| ||||||| || |||||
Sbjct 472 GAGTCTGAAAGCAATCTTGTTGGTTTGGAGAAAAATGTTGAGAGATTGGTT-AAGGAATT 530
Query 522 GGTGGG-AA--ACGATAGCAGTCATGGGGTATCTATTACTGGTTTGGGTGGTCTTGGCAA 578
|||||| || | ||||||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct 531 GGTGGGAAATGATGATAGCAGTCACGGGGTATCTATAACTGGCTTGGGTGGTCTTGGCAA 590
Query 579 AACCACCCTTGCACGGCAAATTTTTGATCATGATA-AGGTAAAAAGTCATTTTGATGGAC 637
|||||||||||| |||||| ||||| ||||||||| | |||||| |||||||||||||||
Sbjct 591 AACCACCCTTGCCCGGCAAGTTTTTAATCATGATACA-GTAAAACGTCATTTTGATGGAC 649
Query 638 TTGCGTGGGTGTGTGTATCACAAGAGTTTACACGGAAAGATGTGTGGAAAACCATCTTG- 696
||| ||||||||||||||| ||||||||||||||||| ||||||||| | |||||||||
Sbjct 650 TTGTGTGGGTGTGTGTATCGCAAGAGTTTACACGGAAGGATGTGTGGCAGACCATCTTGA 709
Query 697 GGGAATCTTAGTCCTAAATATAAAGACTCAGACTTGCCGGAAGACGATATTCAGAAGAAA 756
||| ||||||||||| | ||||||| ||| |||||| ||||||||||||||||||||||
Sbjct 710 GGG-ATCTTAGTCCTGGAGATAAAGATTCAAACTTGCGGGAAGACGATATTCAGAAGAAA 768
Query 757 CTCTTTCAGTTGTTGGAAACaaaaaaaGCTTTGATCGTCTTTGATGACCTATGGAAAAGA 816
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 769 CTCGTTCAGTTGTTGGAAACAAAAAAAGCTTTGATCGTCTTTGATGACCTATGGAAAAAA 828
Query 817 GAGGACTGGTACAGAATAGCGCCCATGTTTCCAGAGAGAAAAGCTGGTTGGAAGGTACTA 876
|| |||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 829 GAAGACTGGGACAGAATAAAGCCAATGTTTCCAGAGAGAAAAGCTGGTTGGAAGGTACTA 888
Query 877 CTTACTTCACGCAACGATGCAATACATCCACATTGTGTGACTTTCAAACCAGAACTCTTA 936
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 889 CTTACTTCACGCAACGACGCAATACATCCACATTGTGTGACCTTCAAACCAGAACTCCTA 948
Query 937 ACTCATGACGAATGTTGGAAACTTTTACAAAGGATAGCATTTTCTAAGCAAAAAACAATA 996
||||||||||||||||||||||||||||||| |||||||||| ||||| || | | |
Sbjct 949 ACTCATGACGAATGTTGGAAACTTTTACAAATGATAGCATTTCCTAAG--AACGTC-ACA 1005
Query 997 ACTGGATATATAATTGATAAAGAAATGGTAAAGATGGCTAAGGAGATGA-CAAAACATTG 1055
||||||||||||||||||||||| |||||| ||||||||||| |||||| | ||||||||
Sbjct 1006 ACTGGATATATAATTGATAAAGATATGGTAGAGATGGCTAAGCAGATGATC-AAACATTG 1064
Query 1056 TAAAAGACTACCATTGGCTGTCAAACTGTTAGGCGGGTTATTAGATGCCAAACACACATT 1115
| | |||||||||||||||||||| ||||||| ||||| |||| |||| ||||||||
Sbjct 1065 TGGAGGACTACCATTGGCTGTCAAAGTGTTAGGAGGGTTGTTAGCTGCCCAACACACACC 1124
Query 1116 GCGTCAGTGGAAACTGATATCTGAGAATATTATATCTCACATAGTTGTTGGAGGGACTAG 1175
|||||||||||| |||||||||||||||||| |||||||||||||| || |||| |||
Sbjct 1125 ACGTCAGTGGAAAATGATATCTGAGAATATTAAATCTCACATAGTTGGAGGTGGGATTAG 1184
Query 1176 TTCCAATGAAAACGATAGCAGTTCGGTTAACCATGTTCTGTCTTTGAGCTTTGAAGGATT 1235
||||||||| |||||||||||||| | || |||||||||||||||||||||||||||||
Sbjct 1185 TTCCAATGATGACGATAGCAGTTCGATCAATCATGTTCTGTCTTTGAGCTTTGAAGGATT 1244
Query 1236 GCCTGGTTATTTGAAGCACTGCTTACTCTACCTAGCCTCTTATCCCGAAGATCATGAAAT 1295
|||| |||||||||||||||||||||||||||||||||||| ||| ||||||| | ||||
Sbjct 1245 GCCTAGTTATTTGAAGCACTGCTTACTCTACCTAGCCTCTTTTCCAGAAGATCGTCAAAT 1304
Query 1296 CGAAATAGAGAGATTGTCTTATGTCTGGGCTGCAGAAGGAATAACATATCCTGGGAATTA 1355
||| |||||||||||||||||||||||||||||||||| |||||| ||||| || ||||
Sbjct 1305 AGAATTAGAGAGATTGTCTTATGTCTGGGCTGCAGAAGGTATAACAAATCCTAGGCATTA 1364
Query 1356 CGAGGGAGCTACCATTCGAGATGTTGCGGATCTCTACATAGAAGAGTTAGTGAAGAGAAA 1415
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1365 CGAGGGAGCTTCCATTCGAGATGTTGCGGATCTCTACATAGAAGAGTTAGTGAAGAGAAA 1424
Query 1416 TATGGTTATTTC-CGAAAGAGACGCGTTGACTTCGAGATTTGAAAAATGTCAGTTGCATG 1474
| |||||||||| | |||||||| | ||||||||||||||||| |||||||||||||
Sbjct 1425 TCTGGTTATTTCTC-AAAGAGACTTGGCGACTTCGAGATTTGAAATTTGTCAGTTGCATG 1483
Query 1475 ACTTGATGAGGGAGATTTGTTTGTTAAAAGCCAAGGAAGAGAACTTTTTACAGATTGTTA 1534
|||||||||| ||||||||||||||||||||||||||||||| |||| || |||||||||
Sbjct 1484 ACTTGATGAGAGAGATTTGTTTGTTAAAAGCCAAGGAAGAGAGCTTTGTAAAGATTGTTA 1543
Query 1535 CTGATCCAACCAGCAGCTCAAGCGTACACTCTCTAGCTTCTAGCAGATCACGTAGACTCG 1594
||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1544 GTGATCCAGCCAGCAGCTCAAGCGTACACTCTCAAGCTTCTAGCAAATCACGTAGACTCG 1603
Query 1595 TAGTGTACAACACCAGTATTTTTAGTGGAGAGAACGATATGAAGAATTCCAAACTTAGAT 1654
| |||||| |||| ||| |||||||||||||| || ||||||||||||||||||||||
Sbjct 1604 TTGTGTACGGCACCCGTACTTTTAGTGGAGAGAGGGAGATGAAGAATTCCAAACTTAGAT 1663
Query 1655 CTCTCTTGTTTATTCCAGTTGGGTATAG-TAGGTTT-TCGATGGGATCAAACTTCATAGA 1712
|||||||||||||||||||||||||| | | ||||| | |||| ||||||||||||| ||
Sbjct 1664 CTCTCTTGTTTATTCCAGTTGGGTAT-GATTGGTTTAT-GATGAGATCAAACTTCATGGA 1721
Query 1713 GTTACCATTGTTGAGGGTTTTAGATCTC-GATGGAGCTAAATTTAAAGGAGGGAAGTTAC 1771
|||||||||||||||||||||||||||| ||||| ||||||||| | |||||||||||||
Sbjct 1722 GTTACCATTGTTGAGGGTTTTAGATCTCAGATGG-GCTAAATTTGAGGGAGGGAAGTTAC 1780
Query 1772 CCTCTAGCATTGGAAAGCTCATCCACTTGAAGTATTTGAGTTTATATCAGGCATCTGTAA 1831
||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||
Sbjct 1781 CCTCTAGCATTGGAAAGCTCATCCACTTGAAGTATTTGAGTTTATATGACGCAAAGGTAA 1840
Query 1832 CTTATTTACCTTCATCTTTGCGGAACCTGAAGTCGCTGCTCTATCTCAATCTACGTATAA 1891
|| || |||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 1841 CTCATCTACCTTCATCTTTGCGGAACCTGAAGTCGCTGCTCTATCTTAATCTAAATATAC 1900
Query 1892 ATTCTGGTCAGCTGATTAACGTGCCCAATGTCTTTAAAGAGATGCTAGAACTGAGATACC 1951
||| ||| |||| | |||||||||||||||||||||||||||||||||||||||| |
Sbjct 1901 GTTC---TCATCTGAATGACGTGCCCAATGTCTTTAAAGAGATGCTAGAACTGAGATATC 1957
Query 1952 TCAGCTTACCATGGGA-AAGAAGTAGTTTGACAAAGTTGGAACTGGGTAATCTACTCAAA 2010
|| ||||||||| ||| | || |||| ||||||||||||| |||||||||||||||||
Sbjct 1958 TCTGCTTACCAT-GGAGTACAACTAGTAGGACAAAGTTGGAATTGGGTAATCTACTCAAA 2016
Query 2011 TTGGAGACGTTGATA-AATTTCTCAACAAAGGATAGCAGTGTGACAGATCTTCACCGTAT 2069
||||||||||||| | ||||||||||| || |||||| || ||| ||||||||||||||
Sbjct 2017 TTGGAGACGTTGA-AGTATTTCTCAACAGAGAATAGCAATGCGACGGATCTTCACCGTAT 2075
Query 2070 GACAAAGCTAAGGACCCTCCAAATCTTAATCAGTGGCGAGGGGTTGCATATGGAAACTCT 2129
||||| |||||||| ||| | |||||||||||||||||||||| || ||||||||||||
Sbjct 2076 GACAAGGCTAAGGAGTCTCGATATCTTAATCAGTGGCGAGGGGTGGCGTATGGAAACTCT 2135
Query 2130 GTCTTCAGCTCTAAGTATGTTGGGACACTTGGAAGATCTTACAGTA-AC-ACCTTCCGAG 2187
|||||| ||||||||| ||||||||||||||||||||||| || || | || |||||
Sbjct 2136 ATCTTCAACTCTAAGTAAATTGGGACACTTGGAAGATCTTAC--TATACGATCTCCCGAG 2193
Query 2188 AATTCCGTTCAGT-TCAAGCACCCGAAGTTGATATATAGGCCGATGTTACCTGATGTGCA 2246
||||||||||| | |||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 2194 AATTCCGTTCA-TCTCAAACACCCTAAGTTGATATATAGGCCGATGTTACCTGATGTGCA 2252
Query 2247 ACATTTTCCTTCTCATCTTACAACCATATCTCTAGTATATTGTTTTTTGGAGGAGGATCC 2306
||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||
Sbjct 2253 ACATTTTCCTTCTCATCTTACAACCATATCTCTAGAAGATTGTCGTTTGGAGGAGGATCC 2312
Query 2307 GATGCCAACTCTAGAGAAACTGCTACAACTGAAAGTGGTTTCTTTATGGTACAACGCCTA 2366
|||||||| | ||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 2313 GATGCCAATTTTAGAGAAACTGCTACAACTGAAAGTGGTTTCTTTATGGTGGAACGCTTA 2372
Query 2367 TGTTGGGAGGAGAA-TGGTTTGCACCGGCGGTGGGTTTCCTCCATTGCACAGGCTTGAAA 2425
|||||||||| ||| |||||||| || ||||||||||||||| ||||| | ||| ||
Sbjct 2373 TGTTGGGAGG-GAAATGGTTTGCTCCAGCGGTGGGTTTCCTCAATTGCTGAAGCTCGATT 2431
Query 2426 TATGGGGACTAGATGCCTTGGAAGAGTGGATAGTAGAAGAAGGCTCCATGCCCCTTCTTC 2485
| || |||||||||| | ||||||||||| |||||||||||||||||||||||||||||
Sbjct 2432 TGTGTGGACTAGATGAATGGGAAGAGTGGAAAGTAGAAGAAGGCTCCATGCCCCTTCTTC 2491
Query 2486 ATACTCTGCAT-ATTG-TAGACTGTAAGAAAT-TAAAGGAGATTCCAGATGGGCTGCGAT 2542
|| |||| ||| ||| | | ||| | || |||||||| |||||||||||||| |||
Sbjct 2492 ATTCTCT-CATTATTCATTGG-TGTC-GTAAGCTAAAGGAGCTTCCAGATGGGCTGAGAT 2548
Query 2543 TTATCAGTTCATTAAAGGAATTGGCTATCCGCACAAATGAAAAAGTATTTCAGAAGAAGG 2602
|||||| ||||||| ||||||||| |||| |||||| |||| || ||||||||||| ||
Sbjct 2549 TTATCACTTCATTACAGGAATTGGGTATCTACACAAAGGAAAGAGAATTTCAGAAGAGGG 2608
Query 2603 TATCCAAAGGAGGAGAAGATTACTATAAAATGCAACACGTCCCTCTTATTCGATATAACT 2662
| ||||||||||||||||||||||||||||| |||||| | ||||||||||||||| |||
Sbjct 2609 TTTCCAAAGGAGGAGAAGATTACTATAAAATCCAACACATTCCTCTTATTCGATATGACT 2668
Query 2663 GGCCACAAGAACCAGAAAACAACGAGGT 2690
|||||||| |||||||| ||||||||||
Sbjct 2669 GGCCACAAAAACCAGAAGACAACGAGGT 2696
> Ahg891414 jgi|Araly1|891414|Al_scaffold_0007_3400
Length=1821
Score = 1441 bits (780), Expect = 0.0
Identities = 1264/1484 (85%), Gaps = 87/1484 (6%)
Strand=Plus/Plus
Query 1036 AAGGAGATGACAAAACATTGTAAAAGACTACCATTGGCTGTCAAACTGTTAGGCGGGTTA 1095
|||||||||| ||||||||| | |||||||||||||||||||| ||||||| |||||
Sbjct 199 AAGGAGATGATTAAACATTGTGGAGGACTACCATTGGCTGTCAAAGTGTTAGGAGGGTTG 258
Query 1096 TTAGATGCCAAACACACATTGCGTCAGTGGAAACTGATATCTGAGAATATTATATCTCAC 1155
|||| ||| |||||||||| ||||||||||||| |||||||||||||||||| | |||||
Sbjct 259 TTAGCTGCAAAACACACATCGCGTCAGTGGAAAATGATATCTGAGAATATTAAAGCTCAC 318
Query 1156 ATAGTTGTTGGAG-GGACTAGTTCCAATGAAAACGATAGCAGTTCGGTTAACCATGTTCT 1214
||||||| || | ||| |||||||||||| ||||||||||| ||||||| |||||| |
Sbjct 319 ATAGTTGAAGG-GCGGATTAGTTCCAATGATGACGATAGCAGTACGGTTAATCATGTTTT 377
Query 1215 GTCTTTGAGCTTTGAAGGATTGCCTGGTTATTTGAAGCACTGCTTACTCTACCTAGCCTC 1274
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 378 GTCTTTGAGCTATGAAGGATTGCCTAGTTATTTGAAGCACTGCTTACTCTACCTAGCCTC 437
Query 1275 TTATCCCGAAGATCATGAAATCGAAATAGAGAGATTGTCTTATGTCTGGGCTGCAGAAGG 1334
|||||| ||||||||| |||| ||||||| |||||||||||||||||||||||||||||
Sbjct 438 TTATCCAGAAGATCATAAAATAAAAATAGACAGATTGTCTTATGTCTGGGCTGCAGAAGG 497
Query 1335 AATAACATATCCTGGGAATTACGAGGGAGCTACCATTCGAGATGTTGCGGATCTCTACAT 1394
||||||| ||||| || ||||||| |||||| |||||||| || |||||||||| ||||
Sbjct 498 AATAACAAATCCTAGGCATTACGATGGAGCTTCCATTCGACATAATGCGGATCTCAACAT 557
Query 1395 AGAAGAGTTAGTGAAGAGAAATATGGTTATTTCCGAAAGAGACGCGTTGACTTCGAGATT 1454
| ||||||||||||||||||||||||||||||| |||||||||| ||| | |||||||||
Sbjct 558 AAAAGAGTTAGTGAAGAGAAATATGGTTATTTCTGAAAGAGACGTGTTTATTTCGAGATT 617
Query 1455 TGAAAAATGTCAGTTGCATGACTTGATGAGGGAGATTTGTTTGTTAAAAGCCAAGGAAGA 1514
|||| | ||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 618 TGAATATTGTCAGTTGCATGACTTGATGAGAGAGATTTGTTTGTTAAAAGGCAAGGAAGA 677
Query 1515 GAACTTTTTACAGATTGTTACTGATCCAACCAGCAGCTCAAGCGTACACTCTCTAGCTTC 1574
|| |||| || ||||||||| ||||||| ||||||| ||| |||| |||| | ||
Sbjct 678 GAGCTTTATAAAGATTGTTAGTGATCCAGCCAGCAGATCA--CGTAGACTC----G-TT- 729
Query 1575 TAGCAGATCACGTAGACTCGTAGTGTACA-ACACCAGTATTTTTAGTGGAGAGAACGATA 1633
| | || || | || ||| |||| | ||| | |||||||| || |
Sbjct 730 --G----T---GT----TC-T-GT--ACAGACAC---T-TTTA-A-TGGAGAGAGGGACA 766
Query 1634 T-GAAGAATTCCAAACTTAGATCTCTCTTGTTTATTCCAGTTGGGTATAGTAGGTTTTCG 1692
| || |||||||||||||||||||||||||||||||| |||| |||| | | ||| ||
Sbjct 767 TTGA-GAATTCCAAACTTAGATCTCTCTTGTTTATTCTAGTTTCGTATCG--G-TTTGCG 822
Query 1693 ATGGGATCAAACTTCATAGA-GTTACCATTGTTGAGGGTTTTAGATCTC-GATGGAGCTA 1750
||| ||||| ||||||| || |||||||||||||||||||||||||||| | | |||||
Sbjct 823 ATGAGATCAGACTTCAT-GATGTTACCATTGTTGAGGGTTTTAGATCTCAG-TAGAGCTG 880
Query 1751 AATTTAAAGGAGGGAAGTTACCCTCTAGCATTGGAAAGCTCATCCACTTGAAGTATTTGA 1810
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 881 AATTTGAAGGAGGGAAGTTACCCTCTAGCATTGGAAAGCTCATCCACTTGAAGTATTTGA 940
Query 1811 GTTTATATCA-GGCATCTGTAACTTATTTACCTTCATCTTTGCGGAACCTGAAGTCGCTG 1869
|||||||| | ||||| ||||||| || ||||||||||||||||||||||||||||||||
Sbjct 941 GTTTATAT-ATGGCATATGTAACTCATCTACCTTCATCTTTGCGGAACCTGAAGTCGCTG 999
Query 1870 CTCTATCT-CAATCTACGTA-T--A-AATTCT-G-G-TCA-GCTG-ATTAACGTGCCCAA 1919
||||| || ||||||| | | | | ||| || | | | | || | |||| |||||||||
Sbjct 1000 CTCTA-CTTCAATCTA-GAAATTTATAATCCTCGAGGTGACGC-GCATTA-CGTGCCCAA 1055
Query 1920 TGTCTTTAAAGAGATGCTAGAACTGAGATAC--CTCAGCTTACCATGG-GAAAGAAGTAG 1976
|||||| |||||||||||||||||||||||| ||| | |||||| || ||| || |||
Sbjct 1056 TGTCTTCAAAGAGATGCTAGAACTGAGATACTTCTC-G-TTACCAAGGAGAAC-AACTAG 1112
Query 1977 TTTGACAAAGTTGGAACTGGGTAATCTACTCAAATTGGAGACGTTGATA-AATTTCTCAA 2035
| ||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||
Sbjct 1113 TAGGACAAAGTTGGAATTGGGTAATCTACTCAAATTGGAGACGTTGA-AGAATTTCTCAA 1171
Query 2036 CAAAGGATAGCAGTGTGACAGATCTTCACCGTATGACAAAGCTAAGGACCCTCCAAATCT 2095
|| || |||||| |||||| ||||||||| |||||| || |||||||| ||||| ||||
Sbjct 1172 CAGAGAATAGCAATGTGACGGATCTTCACTGTATGAGAAGGCTAAGGAGTCTCCAGATCT 1231
Query 2096 TAATCAGTGGCGAGGGGTTGCATATGGAAACTCTGTCTTCAGCTCTAAGT-ATGTTGGGA 2154
|||||||||||||||||| || |||||||||||| || ||| |||| || | ||| |
Sbjct 1232 TAATCAGTGGCGAGGGGTGGCGTATGGAAACTCTATCATCAACTCTCGGTGAA-TTGAAA 1290
Query 2155 CACTTGGAA-GATCTTAC--AGTAACACCTTCCGAGAATTCCGTTCAGT-TCAAGCACCC 2210
||||||||| | ||| || | ||| | || || ||||||| ||||| | ||||||||||
Sbjct 1291 CACTTGGAACG-TCT-ACTTA-TAAAATCTCCCAAGAATTCTGTTCA-TCTCAAGCACCC 1346
Query 2211 GAAGTTGATATATAGGCCGATGTTACCTGATGTGCAACATTTTCCTTCTCATCTTACAAC 2270
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1347 AAAGTTGATATATAGGCCAATGTTACCTGACGTGCAACATTTTCCTTCTCATCTTACAAC 1406
Query 2271 CATATCTCTAGTATATTGTT-T--TTTGGAGGAGGATCCGATGCCAACTCTAGAGAAACT 2327
|||||||||| | || ||| | ||||||||||||||||||||||| ||||||||||||
Sbjct 1407 CATATCTCTA--A-ATGGTTCTCGTTTGGAGGAGGATCCGATGCCAATTCTAGAGAAACT 1463
Query 2328 GCTACAACTGAAAGTGG-TTTCTTTATGGTACAACGCCTATGTTGGGAGGAGAATGGTTT 2386
||||||| ||||| ||| ||||||||||| | ||||| ||||||||||||||||||||||
Sbjct 1464 GCTACAATTGAAA-TGGGTTTCTTTATGGGAGAACGCTTATGTTGGGAGGAGAATGGTTT 1522
Query 2387 GCACCGGCGGTGGGTTTCCTCCATTGCACAGGCT-TGAAATATGGGGACTAGATGCCTTG 2445
|| || ||||||||||||||| |||||| |||| | || || | |||||| | | |
Sbjct 1523 GCTCCAGCGGTGGGTTTCCTCAATTGCATGGGCTCTCAA-TAAGCATACTAGAGGAATGG 1581
Query 2446 GAAGAGTGGATAGTAGAAGAAGGCTCCATGCCCCTTCTTCATAC 2489
||||||||||| |||||||||||||||||||| | ||||||||
Sbjct 1582 GAAGAGTGGATTGTAGAAGAAGGCTCCATGCCACAACTTCATAC 1625
> Ahg475351 jgi|Araly1|475351|fgenesh2_kg.2__481__AT1G59620.1
Length=2655
Score = 207 bits (112), Expect = 3e-52
Identities = 355/470 (76%), Gaps = 25/470 (5%)
Strand=Plus/Plus
Query 2201 TCAAGCACCCGAAGTT--G-ATATATAGGCCGATGTTACCTGATGTGCAACATTTTCCTT 2257
|||| || | |||||| | ||||||| ||| | ||||||||||| ||||| |||||||
Sbjct 2075 TCAAACATCTGAAGTTGAGAATATATATGCCAAGGTTACCTGATGAACAACAATTTCCTT 2134
Query 2258 CTCATCTTACAACCATATCTCTAGTAT-ATTGTTTTTTGGAGGAGGATCCGATGCCAACT 2316
|| | |||| || ||||||||||| | | |||| |||| |||| ||||| ||||| | |
Sbjct 2135 CTTACCTTAGAAACATATCTCTAG-CTGAGTGTTGTTTGAAGGAAGATCCAATGCCGATT 2193
Query 2317 CTAGAGAAACTGCTACAACTGAAA-GTGGTTTCTTTATGGTA-CAACGCCTATGTT--GG 2372
|||||||| ||| | | ||| ||| | ||| ||||| | | ||| || | || ||
Sbjct 2194 CTAGAGAAGCTGATTC-ACTTAAATGAGGTCAGTTTATCGCATCAA--TCT-TTTTGCGG 2249
Query 2373 GAGGAGAATGGTTTGCACCGGCGGTGGGTTTCCTCCATTGCACAGGCTTGAAATATGGGG 2432
|| ||||||||||||| | || ||||||||||||| ||||| | ||| || | || ||
Sbjct 2250 GAAGAGAATGGTTTGCTCGGGTGGTGGGTTTCCTCAATTGCTGAAGCTCGATTTGTGTGG 2309
Query 2433 ACTAGATGCCTTGGAAGAGTGGATAGTAGAAGAAGGCTCCATGCCCCTTCTTCATACTCT 2492
|||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2310 ACTAGATGAATGGGAAGAGTGGATAGTAGAAGAAGGCTCCATGCCCCTTCTTCATAAGCT 2369
Query 2493 G-CATATT-GTAGACTG-TAAGAAATTAAAGGAGATTCCAGATGGGCTGCGATTTATCAG 2549
| | | | | | || | | |||||||||||| |||| ||||||||| ||||||||
Sbjct 2370 GAC-TCTCCGCA-AC-GATCCTAAATTAAAGGAGTTTCCTGATGGGCTGAAATTTATCAC 2426
Query 2550 TTCATTA-AAGGAATTGGC-TATCCGCACAAATGAAAAAGTA-TTTCAGAAGAAGGTATC 2606
|| || ||| || || | | || | |||| || | | ||| ||||||| | ||
Sbjct 2427 ATCTTTGGAAG-AACTG-CATGTCATCTTAAAT-AATTGGGACTTTAAGAAGAAACTGTC 2483
Query 2607 CAAAGGAGGAGAAGATTACTATAAAATGCAACACGTCCCTCTTATTCGAT 2656
|| ||||||| |||||| || ||| | |||||| | ||||| ||||||
Sbjct 2484 CAGGGGAGGAGCAGATTATTACAAAGTCCAACACATTCCTCTCGTTCGAT 2533
> Ahg907496 jgi|Araly1|907496|Al_scaffold_0002_577
Length=1827
Score = 204 bits (110), Expect = 3e-51
Identities = 296/381 (78%), Gaps = 31/381 (8%)
Strand=Plus/Plus
Query 2189 ATTCCGTTCAGT-T-CAAGCACCCGAAGTTG--A-TATATAGGCCGATGTTACCTGATGT 2243
|||||||||| | | ||| |||| || ||| | |||||| ||| | |||||||||||
Sbjct 1358 ATTCCGTTCA-TCTCCAA-CACCTAAACTTGACACTATATATGCCAAGGTTACCTGATGA 1415
Query 2244 GCAACATTTTCCTTCTCATCTTACAACCATATCTC-TAGTATATTGTTTTTTGGAGGAGG 2302
|||| |||| |||||||| |||||||||||||||| | || | ||| ||||| |||||
Sbjct 1416 GCAATATTTCCCTTCTCACCTTACAACCATATCTCTTTGT-GAATGTCGTTTGGTGGAGG 1474
Query 2303 ATCCGATGCCAACTCTAGAGAAACTGCTACAACTGA-A--A-GT-GGTTTCTTTATGGTA 2357
|||| ||||||| ||||||||| ||||| |||| | | | || |||| |||| ||
Sbjct 1475 ATCCAATGCCAATTCTAGAGAAGCTGCT-TAACTTATATGATGTCAGTTTATTTA--GT- 1530
Query 2358 CAACGCCTATGT-TGGGAGGAGAATGGTTTGCACCGGCGGTGGGTTTCCTCCATTGCACA 2416
||| || | | ||||||||||||||||||| | |||||||||||||||| ||||| |
Sbjct 1531 CAA--TCTTTCTGTGGGAGGAGAATGGTTTGCTCGGGCGGTGGGTTTCCTCGGTTGCAGA 1588
Query 2417 GGCTTGAA--ATATGGGGACTAGATGCCTTGGAAGAGTGGATAGTAGAAGAAGGCTCCAT 2474
| | || ||||| ||| |||| | | ||||||||||||||||||||||||||||||
Sbjct 1589 -ACCT-AATGATATGTGGAATAGAAGAGTGGGAAGAGTGGATAGTAGAAGAAGGCTCCAT 1646
Query 2475 GCCCCTTCTTCATACTCTGCATATT-GTAGACTGTAAGAAA-TTAAAGGAGA-TTCCAGA 2531
||| ||||||||| | || |||| || | ||| ||| || ||||| | |||| ||
Sbjct 1647 GCCACTTCTTCATTTTTTGTTTATTAGTTGT-TGTCC-AAAGTTTAAGGA-ACTTCCTGA 1703
Query 2532 TGGGCTGCGATTTATCAGTTC 2552
||| ||| ||||||||| |||
Sbjct 1704 TGGTCTGAGATTTATCACTTC 1724
> Ahg914885 jgi|Araly1|914885|Al_scaffold_0001_5139
Length=2757
Score = 180 bits (97), Expect = 6e-44
Identities = 273/355 (77%), Gaps = 23/355 (6%)
Strand=Plus/Plus
Query 2217 GATATATAGGCCGATGTTACCTGATGTGCAACATTTTCCTTCTCATCTTACA-ACCATAT 2275
||| |||| ||| | | ||||||| || |||||||| |||||||| || | | ||||||
Sbjct 2304 GATTTATATGCCAAAGCTACCTGAGGTACAACATTTCCCTTCTCACCTCA-AGACCATAA 2362
Query 2276 CTCTAGTATATTGTTTTTTGGAGGAGGATCCGATGCCAACTCTAGAGAAACTGCTACAAC 2335
||||| | | |||| ||||||||||||||| ||||| | ||||||||| || | ||
Sbjct 2363 CTCTAACAGAGTGTTGTTTGGAGGAGGATCCCATGCCCATTCTAGAGAAGTTGTTTCAGT 2422
Query 2336 TGAAAGTGGTTTC-TTTATGGTA-CAA-CGCCTATGTTGGGAGGAGAATGGTTTGCACCG 2392
|||||| || ||| |||| ||| ||| || | || ||||| ||||||||||||| |||
Sbjct 2423 TGAAAGAGG-TTCATTTAAAGTATCAATCG-TTCTG-TGGGAAGAGAATGGTTTGCTCCG 2479
Query 2393 GCGGTGGGTTTCCTCCATTGCACAGGCTT-GA--AATATGGGGACTAGATGCCTTGGAAG 2449
|| ||| ||||||| | | ||| | || | || | | | || | | | |||||
Sbjct 2480 GCAATGGATTTCCTCAACT--ACA-GTTTCTATCGATTTTTGAATTAAAGGAATGGGAAG 2536
Query 2450 AGTGGATAGTAGAAGAAGGCTCCATGCCCCTTCTTCATACTCTG-CATATTGTAGACT-G 2507
||||||||||||||||||||||||||||||||||||||||| || | |||| | || | |
Sbjct 2537 AGTGGATAGTAGAAGAAGGCTCCATGCCCCTTCTTCATACTTTGAC-TATT-TGGAGTTG 2594
Query 2508 TAAGAAA-TTAAAGGAGA-TTCCAGATGGGCTGCGATTTATCAGTTCATT-AAAG 2559
| |||| |||||||| | ||||||||||| || ||| ||||| ||| || ||||
Sbjct 2595 TG-GAAAATTAAAGGA-ACTTCCAGATGGGATGAGATATATCACTTCCTTGAAAG 2647
> Ahg907562 jgi|Araly1|907562|Al_scaffold_0002_643
Length=2619
Score = 154 bits (83), Expect = 3e-36
Identities = 197/250 (79%), Gaps = 16/250 (6%)
Strand=Plus/Plus
Query 2287 TGTTTTTTGGAGGAGGATCCGATGCCAACTCTAGAGAAACTGCTACAACTGAAAGTGGTT 2346
|||| ||||||||||||||| ||||| | ||| |||||| |||| || | |||| || |
Sbjct 2347 TGTTATTTGGAGGAGGATCCAATGCCGATTCTTGAGAAATTGCTTCATTTAAAAGAGG-T 2405
Query 2347 TC-TTTATGGTACAAC-GCCTATGT-TGGGAG-GAGAATGGTTTGCACCGGCGGTGGGTT 2402
|| |||| || | | | || | | ||| || || |||||||||| | |||||||||||
Sbjct 2406 TCGTTTA-GGGATTGCTG-CTTTCTATGGAAGCGA-AATGGTTTGCTCGGGCGGTGGGTT 2462
Query 2403 TCCTCCA-TTGCACAGGCTTGAAATATGGGGACTAGATGCCTTGGAAGAGTGGATAGTAG 2461
|||| || ||| | | ||| || ||| ||||| || || |||||||||||||||||
Sbjct 2463 TCCT-CAGTTGGAGAAGCTCGATATAAATAGACTATATAACTGGGAAGAGTGGATAGTAG 2521
Query 2462 AAGAAGGCTCCATGCCCCTTCTTCATACTCTG-CATATTG-TAGACTGT-AAGAAATTAA 2518
||||||||||||||||||||||||||||||| | |||| |||| ||| || |||||||
Sbjct 2522 AAGAAGGCTCCATGCCCCTTCTTCATACTCTTTC-TATTAATAGA-TGTCAA-AAATTAA 2578
Query 2519 AGGAGATTCC 2528
| ||| ||||
Sbjct 2579 AAGAGCTTCC 2588
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102653210275
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5