BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G59800.1
Length=768
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925090 jgi|Araly1|925090|scaffold_200651.1 782 0.0
Ahg947963 jgi|Araly1|947963|scaffold_704192.1 486 8e-137
Ahg311398 jgi|Araly1|311398|fgenesh1_pm.C_scaffold_1000178 357 7e-98
Ahg925097 jgi|Araly1|925097|scaffold_200658.1 291 7e-78
Ahg338398 jgi|Araly1|338398|fgenesh1_pg.C_scaffold_2000497 278 5e-74
Ahg338401 jgi|Araly1|338401|fgenesh1_pg.C_scaffold_2000500 171 9e-42
Ahg338392 jgi|Araly1|338392|fgenesh1_pg.C_scaffold_2000491 82.4 5e-15
> Ahg925090 jgi|Araly1|925090|scaffold_200651.1
Length=716
Score = 782 bits (423), Expect = 0.0
Identities = 587/663 (89%), Gaps = 24/663 (4%)
Strand=Plus/Plus
Query 13 ACAGAGATTAAATTTGAGGTAGAATGGTCCAACATACAACAAGGTTTTACCAAGCTGATA 72
||||||||||||||||||| || ||||||| ||||||| |||||| |||| |||||||||
Sbjct 31 ACAGAGATTAAATTTGAGGAAGGATGGTCCTACATACATCAAGGTGTTACTAAGCTGATA 90
Query 73 AGAATGATAGAAGGAGAGTCTGAACCAGCATT-TAA--TCAGGAAATTATGATG-ATGAT 128
||||| ||||||||||| ||||||||||||| || ||| | || ||| ||| || |
Sbjct 91 AGAATTTTAGAAGGAGAGCCTGAACCAGCATTAGAATCTCA-GCAA-TAT-ATGAAT-CT 146
Query 129 GCATACGGCTACTTACCGTATATGCGCCTACAAGAA-CC------CT--CAACAGCTTTA 179
| | ||| |||| || ||| |||| | || |||||| || || |||||||||||
Sbjct 147 GTACACGACTACCTA-CGT-TATGTG-CTCCAAGAACCCTAATTACTCACAACAGCTTTA 203
Query 180 TGATAAGTATCGTGAATTAATTGAGAATTATGCAATCCAAACGGTGTTGCCATCTTTAAG 239
|||||||||||||||| ||||||| |||||| ||||||||||||||||||| ||||||||
Sbjct 204 TGATAAGTATCGTGAAGTAATTGAAAATTATACAATCCAAACGGTGTTGCCGTCTTTAAG 263
Query 240 GGAAAAGCATGATGAATGTATGCTACGAGAGCTTGCTAAGAGGTGGAATGCCCATAAACT 299
||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
Sbjct 264 GGAGAAGCATGATGAATGTATGCTAAGAGAGCTTGCTAAGAGGTGGAATAACCATAAATT 323
Query 300 TTTGGTTAGATTATTTAGCAGAAGGTTGGTCTATTTAGACGATTCCTTTCTTTCTAAAAA 359
|||||||||||| ||||||||| ||| | ||| ||||| ||||||| |||||||||
Sbjct 324 TTTGGTTAGATTGTTTAGCAGATTCTTGCTTTATATAGACTCTTCCTTTGTTTCTAAAAG 383
Query 360 AGGCCTTCCATCACTGAGGGAAGTTGGCTTGAATTGCTTCCGCGACCAGGTTTATCGTGA 419
||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 384 AGGTCTTCCATCACTGAGGGAAGTTGGCTTGAATTGCTTCCACGACCTGGTTTATCGTGA 443
Query 420 AATGCAGTCCATGGCCGCAGAAGCTATATTAGCACTTATTCATAAAGAACGTGAGGGTGA 479
|||||||||||||||| |||||||| || ||||||||||||||||||| |||||||||||
Sbjct 444 AATGCAGTCCATGGCCACAGAAGCTGTAATAGCACTTATTCATAAAGAGCGTGAGGGTGA 503
Query 480 ACAAATTGATAGAGAACTTGTGAGAAACGTAATAGATGTCTTTGTTGAGAATGGGATGGG 539
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 504 ACAAATTGATAGAGAACTAGTGAGAAACGTAATAGATGTCTTTATTGAGAATGGGATGGG 563
Query 540 AACTCTaaaaaaaTATGAAGAGGATTTTGAAAGGCT-CATGCTTCAAGATACTGCTTCTT 598
|||| | |||||||||||||||||||||||||| || |||||| ||||||||||||||||
Sbjct 564 AACTATGAAAAAATATGAAGAGGATTTTGAAAG-CTTCATGCTCCAAGATACTGCTTCTT 622
Query 599 ACTATTCTAGCAAGGC-ATCAAGGTGGATCCAAGAGGAGTCTTGTCTTGATTACACGCTA 657
|||||||||||||||| | ||||||||||||||||| | |||||||||||||||||||||
Sbjct 623 ACTATTCTAGCAAGGCGA-CAAGGTGGATCCAAGAGTATTCTTGTCTTGATTACACGCTA 681
Query 658 AAG 660
|||
Sbjct 682 AAG 684
> Ahg947963 jgi|Araly1|947963|scaffold_704192.1
Length=1148
Score = 486 bits (263), Expect = 8e-137
Identities = 595/748 (80%), Gaps = 52/748 (7%)
Strand=Plus/Plus
Query 20 TTAAATTTGAGGTAGAATGGTCCAACATACA-ACAAGGTTTTACC-AAGCTGATAAGAAT 77
|||||||||||| || ||||||| | | || | ||||| ||||| ||| ||||||| ||
Sbjct 28 TTAAATTTGAGGAAGGATGGTCCTCCTTGCAGA-AAGGTATTACCGAAG-TGATAAGGAT 85
Query 78 GATAGAAGGAGAGTCTGAACCAGCATTT-AA--TCAGGAAATTATGATGATGATGCATAC 134
||||||| |||| | |||||||||||| || |||| | | | | || | | ||
Sbjct 86 CATAGAAGAAGAGCCGGAACCAGCATTTAAACCTCAGCTAGGTGTCA--AT-CTTTACAC 142
Query 135 GGCTACT-TACCGTATATGCGC-CTACAAGAACC------CTCA-A-CAGCTTTATGATA 184
| | | | || || ||||| || | ||| |||| |||| | ||||||||||| |
Sbjct 143 GAC-AATCTA-CG-ATATGTGCAC-CCAAAAACCAGATTACTCACATCAGCTTTATGAGA 198
Query 185 AGTATCGTGAATTAATTG-AGAATTATGCAATCCAAACGGTGTTGCCATCTTTAAGGGAA 243
|||||| | || |||||| || ||||| | ||||||||||||||||| |||||||||||
Sbjct 199 AGTATCTTCAAGTAATTGAAG-ATTATACTATCCAAACGGTGTTGCCTTCTTTAAGGGAG 257
Query 244 AAGCATGATGAATGTATGCTACGAGAGCTTGCTAAGAGGTGGAATGCCCATAAACTTTTG 303
|||||||||||| ||||||| |||||||| ||||||||||||| ||||||| |||||
Sbjct 258 AAGCATGATGAACATATGCTAATAGAGCTTGTTAAGAGGTGGAATAACCATAAAATTTTG 317
Query 304 GTTAGATTATTTAGCAGAAGGTTGGTCTATT-TA--GA-CGATTCCTTTCTT--TCTAAA 357
|||| ||| |||| | || || || ||| || || || || ||| || || |
Sbjct 318 GTTACATT-TTTAAC-CAACATT-TTCCATTATATCGACCG-TTACTTGGTTCCTCGGAC 373
Query 358 AAAGGCCTTCCATCACTGAG-GGAAGTTGGCTTGA-ATTGCTTCCGCGACCAGGTTTA-T 414
|| |||||||||| || |||||||| |||| | ||||||| |||| |||||| |
Sbjct 374 TAA--TATTCCATCACT-AGATGAAGTTGGATTGACA-TGCTTCCTTGACCTGGTTTATT 429
Query 415 CGTGAAATGCAGTCCATGGCCGCAGAAGCTATATTAGCACTTATTCATAAAGAACGTGAG 474
| ||| ||||| ||||||||| || ||||| || ||||||||||||||||||||||||||
Sbjct 430 C-TGAGATGCAATCCATGGCCACAAAAGCTGTAGTAGCACTTATTCATAAAGAACGTGAG 488
Query 475 GGTGAACAAATTGATAGAGAACTTGTG-AGAAACGTAATAGATGTCTTTGTTGAGAATGG 533
|| ||| | |||||||| | ||| ||| || |||||| ||||||||| ||| || |||||
Sbjct 489 GGCGAAGAGATTGATAGGGCACTAGTGAAG-AACGTATTAGATGTCTATGTGGATAATGG 547
Query 534 GATGGGAA-CTCTaaaaaaaTATGAAGAGGATTTTGAAAGGC-TCATGCTTCAAGATACT 591
|||||||| | || |||||||||||||||||||||||| || |||||||||||||||||
Sbjct 548 GATGGGAACCACT-GAAAAATATGAAGAGGATTTTGAAA-GCTTCATGCTTCAAGATACT 605
Query 592 GCTTCTTACTATTCTAGCAAGGCATCAAGGTGGATCCAAGAGGAGTCTTGTCTTGATTAC 651
||||||||||||||| ||||||| |||||||||||| | ||||| ||||||| |||||||
Sbjct 606 GCTTCTTACTATTCTCGCAAGGCGTCAAGGTGGATCGAGGAGGATTCTTGTCCTGATTAC 665
Query 652 ACGCTAAAGCCTCAACAGTGTTTACAA-AGGGAGAGGGAGAGAGTCACTCACTACCTTCA 710
| | ||||| | | ||||| || || |||||||||||||||||||||||||| || ||
Sbjct 666 ATGATAAAGGTTGAGGAGTGTCTA-AAGAGGGAGAGGGAGAGAGTCACTCACTATCTCCA 724
Query 711 TCCAACCACTGAACCCAAACTATTTGAG 738
| ||| |||||||||||||||| |||||
Sbjct 725 TTCAAGCACTGAACCCAAACTAGTTGAG 752
> Ahg311398 jgi|Araly1|311398|fgenesh1_pm.C_scaffold_1000178
Length=2220
Score = 357 bits (193), Expect = 7e-98
Identities = 459/583 (79%), Gaps = 36/583 (6%)
Strand=Plus/Plus
Query 172 CAGCTTTATGATAAGTATCGTGAATTAATTGA-GAATTATGCAAT--CCAAACGGTGTTG 228
|||||||||||||||||||||| | ||||||| | |||| |||| ||||| ||||||
Sbjct 181 CAGCTTTATGATAAGTATCGTGGAGTAATTGATG-ATTA--CAATAAACAAACAGTGTTG 237
Query 229 CCATCTTTAAGGGAA-AAGCATGATGAATGTATGCT-ACGAGAGCTTGCTAAGAGGTGGA 286
|| || ||| |||| ||||||| ||||| |||||| | ||||||||| |||||| |||
Sbjct 238 CCGGCTATAA-GGAAGAAGCATGGTGAATATATGCTGA-GAGAGCTTGTTAAGAGATGGG 295
Query 287 ATGCCCATAAACTTTTGGTTAGATTATTTA-GCAGAAGGTTGGTCTAT-TTAGA-CGATT 343
| ||||||| || |||||||| | ||| | | || | |||| || || || ||
Sbjct 296 CTAACCATAAAGTTCTGGTTAGA-TGGTTATCCCGCTTCTTCGACTATCTT-GACCG-TT 352
Query 344 CCTTTCTT--TCTAAAAAAGGCCTTCCATCACTG-AGGGAAGTTGGCTTGA-ATTGCTTC 399
|||| || || | ||| |||| | ||||| | | |||||||||| | | |||
Sbjct 353 ACTTTGTTCCTCGGAGAAA--TCTTCTAACACTGAATAG-TGTTGGCTTGACA-TCCTTT 408
Query 400 CGCGACCAGGTTTATCGTGAAATGCAGTCC-ATGGCCGCAGAAGCTATATTAGCACTTAT 458
||||||| |||||||| || || |||||| || ||| ||| ||| || ||| ||||||
Sbjct 409 CGCGACCTGGTTTATCAAGAGATACAGTCCAAT-GCCAAAGACGCTGTACTAGAACTTAT 467
Query 459 TCATAAAGAACGTGAGGGTGAACAAATTGATAGAGAACT-TGTGAGAAACGTAATAGATG 517
|||||||||||||||||||||||| ||||||||| ||| | ||| ||||||||||||||
Sbjct 468 TCATAAAGAACGTGAGGGTGAACAGATTGATAGATCACTAT-TGAAAAACGTAATAGATG 526
Query 518 TCT-TTGTTGAGAATGGGATGGGA-ACTCTaaaaaaaTATGAAGAGGATTTTGAAAGGCT 575
||| |||| | |||||| |||||| | | |||||| ||||||||||||||||| ||
Sbjct 527 TCTATTGTGG-GAATGGAATGGGAGAGA-TGGTAAAATACGAAGAGGATTTTGAAAG-CT 583
Query 576 -CATGCTTCAAGATACTGCTTCTTACTATTCTAGCAAGGCATCAAGGTGGATCCAAGAGG 634
| ||||||||||| |||| |||||||||||| ||||||| |||| ||||| ||| ||||
Sbjct 584 TCTTGCTTCAAGATTCTGCATCTTACTATTCTCGCAAGGCCTCAAAGTGGAGCCAGGAGG 643
Query 635 AGTCTTGTCTTGATTACACGCTAAAGCCTCAACAGTGTTTACAAAG-GGAGAGGGAGAGA 693
| ||||||| |||||||| || |||| || | ||||| || ||| ||||| |||||||
Sbjct 644 ATTCTTGTCCTGATTACATGCGAAAGGCTGAGGAGTGTCTA-AAACTGGAGAAGGAGAGA 702
Query 694 GTCACTCACTACCTTCATCCAACCACTGAACCCAAACTATTTG 736
|||||| ||||||||||| |||||||||| || ||| || |||
Sbjct 703 GTCACTAACTACCTTCATTCAACCACTGAGCCGAAATTACTTG 745
> Ahg925097 jgi|Araly1|925097|scaffold_200658.1
Length=1200
Score = 291 bits (157), Expect = 7e-78
Identities = 280/337 (83%), Gaps = 17/337 (5%)
Strand=Plus/Plus
Query 406 CAGGTTTATCGTGAAATGCAGTCCATGGCCGCAGAAGCTATATTAGCACTTATTCATAAA 465
|||||||||| ||| |||||||||| ||| || ||| | ||||||||||||||||||||
Sbjct 524 CAGGTTTATCATGAGATGCAGTCCACAGCCACAAAAGTTGTATTAGCACTTATTCATAAA 583
Query 466 GAACGTGAGGGTGAACAAATTGATAGAGAACTTGTGA-GAAACGTAATAGATGTCTTTGT 524
||||||||||| ||||| |||||||| | ||| ||| ||| |||| || || ||| ||
Sbjct 584 GAACGTGAGGGCGAACAGATTGATAGGGCACTAATGAAGAA-CGTATTAAATATCTACGT 642
Query 525 TGAGAATGGGATGGGAACTCTaaaaaaaTATGAAGAGGATTTTGAAAGGCT-CATGCTTC 583
||||||||||||||||| | |||||||||||||||||||| || |||||||
Sbjct 643 GGAGAATGGGATGGGAAC---A------TATGAAGAGGATTTTGAAAG-CTTCATGCTTG 692
Query 584 AAGATACTGCTTCTTACTATTCTAGCAAGGCATCAAGGTGGATCCAAGAGGAGTCTTGT- 642
||||||||||||||||||||||| | ||||| |||||||||||| | ||||| ||||||
Sbjct 693 AAGATACTGCTTCTTACTATTCTCGTAAGGCGTCAAGGTGGATCGAGGAGGATTCTTGTT 752
Query 643 CTTGATTACACGCTAAAGCCTCAACAGTGTTTACAA-AGGGAGAGGGAGAGAGTCACTCA 701
|| |||||| ||||||| | || ||||| || || |||||||||||||||||||||||
Sbjct 753 CTC-ATTACATGCTAAAGGTTGAAGAGTGTCTA-AAGAGGGAGAGGGAGAGAGTCACTCA 810
Query 702 CTACCTTCATCCAACCACTGAACCCAAACTATTTGAG 738
||| || ||| ||| ||||||||||||| || |||||
Sbjct 811 CTATCTCCATTCAAGCACTGAACCCAAAGTAGTTGAG 847
> Ahg338398 jgi|Araly1|338398|fgenesh1_pg.C_scaffold_2000497
Length=543
Score = 278 bits (150), Expect = 5e-74
Identities = 188/206 (91%), Gaps = 4/206 (2%)
Strand=Plus/Plus
Query 457 ATTCATAAAGAACGTGAGGGTGAACAAATTGATAGAGAACTTGTGAGAAACGTAATAGAT 516
||||||||||||||||| || |||||||||||||||||||| ||||||||| ||||| ||
Sbjct 145 ATTCATAAAGAACGTGAAGGCGAACAAATTGATAGAGAACTAGTGAGAAACATAATAAAT 204
Query 517 GTCTTTGTTGAGAATGGGATGGGAACTC-TaaaaaaaTATGAAGAGGATTTTGAAAGGC- 574
|||| ||||||||||||||||||| | | ||||| ||||||||||||||||||||| ||
Sbjct 205 GTCTATGTTGAGAATGGGATGGGATC-CATAAAACAATATGAAGAGGATTTTGAAA-GCT 262
Query 575 TCATGCTTCAAGATACTGCTTCTTACTATTCTAGCAAGGCATCAAGGTGGATCCAAGAGG 634
|||||||||||||||||||||||||||||| ||||||||| |||||||||||| | ||||
Sbjct 263 TCATGCTTCAAGATACTGCTTCTTACTATTTTAGCAAGGCGTCAAGGTGGATCGAGGAGG 322
Query 635 AGTCTTGTCTTGATTACACGCTAAAG 660
| ||||||| ||||||||||||||||
Sbjct 323 ATTCTTGTCCTGATTACACGCTAAAG 348
Score = 132 bits (71), Expect = 4e-30
Identities = 77/80 (96%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 661 CCTCAACAGTGTTTACAAAGGGAGAGGGAGAGAGTCACTCACTACCTTCATCCAACCACT 720
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 406 CCTCAAGAGTGTCTACAAAGGGAGAGGGAGAGAGTCACTCACTACCTTCATCCAACCACT 465
Query 721 GAACCCAAACTATTTGAGGT 740
||||||||||||||| ||||
Sbjct 466 GAACCCAAACTATTTAAGGT 485
> Ahg338401 jgi|Araly1|338401|fgenesh1_pg.C_scaffold_2000500
Length=561
Score = 171 bits (92), Expect = 9e-42
Identities = 133/153 (87%), Gaps = 2/153 (1%)
Strand=Plus/Plus
Query 453 ACTTATTCATAAAGAACGTGAGGGTGAACAAATTGAT-AGAGAACTTGTGAGAAACGTAA 511
||| ||||||||||| |||||||| ||||| | |||| || | ||| |||| |||| ||
Sbjct 408 ACTGATTCATAAAGAGCGTGAGGGAGAACAGACTGATAAG-GCACTGGTGAAAAACATAT 466
Query 512 TAGATGTCTTTGTTGAGAATGGGATGGGAACTCTaaaaaaaTATGAAGAGGATTTTGAAA 571
||||| ||| ||| |||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 467 TAGATATCTATGTAGAGAATGGGATGGGAACTATGGAAAAATATGAAGAGGATTTTGAAA 526
Query 572 GGCTCATGCTTCAAGATACTGCTTCTTACTATT 604
| ||||||||||||||||||||||||||||||
Sbjct 527 GATTCATGCTTCAAGATACTGCTTCTTACTATT 559
> Ahg338392 jgi|Araly1|338392|fgenesh1_pg.C_scaffold_2000491
Length=1215
Score = 82.4 bits (44), Expect = 5e-15
Identities = 63/72 (88%), Gaps = 2/72 (3%)
Strand=Plus/Plus
Query 668 AGTGTTTACAAA-GGGAGAGGGAGAGAGTCACTCACTACCTTCATCCAACCACTGAACCC 726
||||| || ||| | |||||||||||||||||||||||||||||| ||| ||| ||||||
Sbjct 752 AGTGTCTA-AAACGAGAGAGGGAGAGAGTCACTCACTACCTTCATTCAAGCACCGAACCC 810
Query 727 AAACTATTTGAG 738
||||| |||||
Sbjct 811 AAACTGGTTGAG 822
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28325327331
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5