BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G59830.1
Length=1301
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475327 jgi|Araly1|475327|fgenesh2_kg.2__457__AT1G59830.1 1973 0.0
Ahg919825 jgi|Araly1|919825|scaffold_101106.1 1085 0.0
> Ahg475327 jgi|Araly1|475327|fgenesh2_kg.2__457__AT1G59830.1
Length=1289
Score = 1973 bits (1068), Expect = 0.0
Identities = 1231/1305 (94%), Gaps = 29/1305 (2%)
Strand=Plus/Plus
Query 7 AATAATAAATATCCA-TTTTGTGTGATATGAGAGAAACAAAACCAAAGACGAGCCAGAGC 65
||||||||||||||| ||||||||| ||||||||||| |||||||||||| ||||||||
Sbjct 3 AATAATAAATATCCATTTTTGTGTG--ATGAGAGAAACCAAACCAAAGACGGGCCAGAGC 60
Query 66 CACCTCTAACACCATCGGCGACTTCTCCTCCTACTCCTCCGTCGCCGACGTGTTCGATTT 125
||||||||| || ||||||||||||||||||| |||| ||||||||| ||||||||||||
Sbjct 61 CACCTCTAAAACAATCGGCGACTTCTCCTCCTCCTCCACCGTCGCCGCCGTGTTCGATTT 120
Query 126 ACAACGATTCGGTGGCTATTGGTTGTAAGATTTAGAATTAAAGGTTAAAGGAGACGACGA 185
|||||||||||||||||| | | | | |||||| ||||||||||||||||||||||||||
Sbjct 121 ACAACGATTCGGTGGCTAATCG-T-T-AGATTTTGAATTAAAGGTTAAAGGAGACGACGA 177
Query 186 CGAGAGATGCCGTTAAACGGAGATCTCGACCGTCAGATCGAACAGCTAATGGAGTGTAAG 245
||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 178 CGAGAGATGCCGTCAAACGGAGATCTCGACCGTCAGATCGAACAGCTTATGGAGTGTAAA 237
Query 246 CCGTTAGGTGAAGCAGACGTGAAGATCCTTTGCGATCAAGCTAAAGCGATTCTTGTTGAG 305
||||| ||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||
Sbjct 238 CCGTTGGGTGAAGCAGACGTGAAGATCCTCTGCGATCAAGCCAAAGCGATTCTCGTTGAG 297
Query 306 GAATATAATGTTCAACCGGTTAAGTGTCCGGTTACGGTATGCGGCGATATCCATGGCCAG 365
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 298 GAATATAATGTTCAACCGGTTAAGTGTCCGGTTACGGTATGCGGCGATATCCATGGACAG 357
Query 366 TTTTATGACCTAATTGAGCTATTTCGTATTGGTGGTAATGCTCCTGATACTAATTACCTC 425
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 358 TTTTATGACCTAATTGAGCTTTTTCGTATTGGTGGTAATGCTCCTGATACTAATTACCTC 417
Query 426 TTCATGGGAGATTATGTAGATCGTGGCTACTATTCTGTAGAAACAGTCTCTCTATTGGTG 485
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 418 TTCATGGGTGATTATGTAGATCGTGGCTACTATTCTGTAGAAACAGTCTCTTTATTGGTG 477
Query 486 GCATTAAAGGTGCGTTACAGGGACAGACTTACGATCCTGCGAGGGAATCATGAGAGCCGT 545
||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 478 GCACTGAAGGTGCGTTACAGGGACAGACTTACGATCCTGCGAGGGAATCATGAGAGTCGT 537
Query 546 CAGATTACACAAGTCTATGGTTTTTATGACGAATGCTTGAGGAAATACGGAAATGCAAAT 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 CAGATTACACAAGTCTATGGTTTTTATGACGAATGCTTGAGGAAATACGGAAATGCAAAT 597
Query 606 GTGTGGAAGTATTTTACGGACCTTTTCGATTATCTCCCTCTTACAGCACTCATAGAGAGT 665
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 598 GTGTGGAAGTATTTTACGGACCTTTTCGATTATCTTCCTCTTACAGCACTCATAGAGAGT 657
Query 666 CAGGTTTTCTGTTTGCATGGAGGCCTTTCACCTTCTCTGGATACTCTTGACAATATCCGA 725
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 658 CAGGTTTTCTGTTTGCATGGAGGCCTTTCACCTTCTCTGGATACCCTTGACAATATCCGA 717
Query 726 AGCTTGGATCGAATACAAGAGGTTCCACACGAAGGACCAATGTGCGATCTACTCTGGTCT 785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 AGCTTGGATCGAATACAAGAGGTTCCACACGAAGGACCAATGTGCGATCTACTCTGGTCT 777
Query 786 GATCCCGACGATCGTTGTGGATGGGGAATATCTCCTCGTGGTGCTGGTTACACGTTTGGA 845
||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 778 GATCCAGATGATCGTTGTGGATGGGGAATATCTCCCCGTGGTGCTGGTTACACGTTTGGA 837
Query 846 CAGGACATTGCTACTCAGTTTAATCATAACAATGGACTGAGTCTGATCTCAAGAGCGCAT 905
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 838 CAGGACATTGCTACTCAGTTTAATCATAACAATGGACTGAGTCTGATATCAAGAGCGCAT 897
Query 906 CAACTTGTAATGGAAGGCTATAATTGGTGTCAGGAAAAGAACGTAGTGACAGTGTTTAGT 965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 CAACTTGTAATGGAAGGCTATAATTGGTGTCAGGAAAAGAACGTAGTGACAGTGTTTAGT 957
Query 966 GCACCGAACTACTGTTACAGATGTGGAAACATGGCCGCAATTCTTGAGATTGGAGAAAAG 1025
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 958 GCACCAAACTACTGTTACAGATGTGGAAACATGGCAGCAATTCTTGAGATTGGAGAAAAG 1017
Query 1026 ATGGAACAGAACTTCCTTCAATTCGATCCAGCACCTAGACAAGTCGAACCCGATACCACG 1085
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1018 ATGGAACAGAACTTCCTTCAGTTCGATCCAGCACCTAGACAGGTCGAACCCGATACCACC 1077
Query 1086 CGCAAGACCCCTGATTAttttttgtgatttc---a----tt--ttttttcttccaaagtt 1136
||||||||||||||||||||||||||||||| | || |||||| ||| ||||||
Sbjct 1078 CGCAAGACCCCTGATTATTTTTTGTGATTTCCCTACCACTTCATTTTTTTTTC-AAAGTT 1136
Query 1137 tgtttgttgctgtatcattgtagatgtgtctgttttattttgttttttCGAGTCTCTAGA 1196
||||||||||||||||||||||||||||||| | ||||| |||| | | | ||
Sbjct 1137 TGTTTGTTGCTGTATCATTGTAGATGTGTCTCT---ATTTTATTTTGT----T-T-TA-- 1185
Query 1197 TGGAATGTGATACCAAAGACGAAAAACCCATCAtttttttGTTGATGTTGATACTGAAAC 1256
|||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1186 TGGAATTTGATACCGAAGACGAAAAACCCATCATTTTTTTGTTGATGTTGATACTGAAAA 1245
Query 1257 AGGTTTGTAGAAGCCTCTTCTTATTATAGAAAAT-GTCTTTTGAT 1300
||||||||||||||||| | |||| ||||||||| | ||||||||
Sbjct 1246 AGGTTTGTAGAAGCCTCCTATTATAATAGAAAATAG-CTTTTGAT 1289
> Ahg919825 jgi|Araly1|919825|scaffold_101106.1
Length=963
Score = 1085 bits (587), Expect = 0.0
Identities = 827/944 (88%), Gaps = 11/944 (1%)
Strand=Plus/Plus
Query 190 AGATGCCGTTAAACGGAGATCTCGACCGTCAGATCGAACAGCTAATGGAGTGTAAGCCGT 249
||||||||| ||||||||||| |||||||||||||| ||||| ||||||||||| ||||
Sbjct 20 AGATGCCGTCGAACGGAGATCTGGACCGTCAGATCGAGCAGCTGATGGAGTGTAAACCGT 79
Query 250 TAGGTGAAGCAGACGTGAAGATC-CTTTGCGATCAAGCTAAAGCGATTCTTGTTGAGGAA 308
|| || || || |||| || | |||||||||||||| | |||||| ||||| ||||||
Sbjct 80 TATCAGAGGCGGATGTGAGGA-CGCTTTGCGATCAAGCGAGAGCGATCCTTGTCGAGGAA 138
Query 309 TATAATGTTCAACCGGTTAAGTGTCCGGTTACGGTATGCGGCGATATCCATGGCCAGTTT 368
||||||||||| ||||| ||||| || ||||| || ||||||||||| || |||||||||
Sbjct 139 TATAATGTTCAGCCGGTGAAGTGCCCTGTTACCGTTTGCGGCGATATTCACGGCCAGTTT 198
Query 369 TATGACCTAATTGAGCTATTTCGTATTGGTGGTAATGCTCCTGATACTAATTACCTCTTC 428
|||||||| |||||||| ||||| || ||||| || |||||||||||||| |||||||||
Sbjct 199 TATGACCTTATTGAGCTCTTTCGAATCGGTGGCAACGCTCCTGATACTAACTACCTCTTC 258
Query 429 ATGGGAGATTATGTAGATCGTGGCTACTATTCTGTAGAAACAGTCTCTCTATTGGTGGCA 488
|||||||| |||||||| ||||| |||||||| ||||| ||||| |||||||||||||||
Sbjct 259 ATGGGAGACTATGTAGACCGTGGATACTATTCAGTAGAGACAGTTTCTCTATTGGTGGCA 318
Query 489 -TTAAAGGTGCGTTACAGGGACAGACTTACGATCCTGCGAGGGAATCATGAGAGCCGTCA 547
| ||| ||||| |||||||| ||| |||| ||| | ||||||||||| ||||| |||||
Sbjct 319 CTGAAA-GTGCGATACAGGGATAGAATTACAATCTTACGAGGGAATCACGAGAGTCGTCA 377
Query 548 GATTACACAAGTCTATGGTTTTTATGACGAATGCTTGAGGAAATACGGAAATGCAAATGT 607
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 378 GATTACTCAAGTCTATGGTTTTTATGACGAATGCTTGAGGAAGTACGGAAATGCAAATGT 437
Query 608 GTGGAAGTATTTTACGGACCTTTTCGATTATCTCCCTCTTACAGCACTCATAGAGAGTCA 667
|||||||||||||| || |||||||||||||| |||||||| || ||||||||||||||
Sbjct 438 CTGGAAGTATTTTACAGATCTTTTCGATTATCTTCCTCTTACCGCCCTCATAGAGAGTCA 497
Query 668 GGTTTTCTGTTTGCATGGAGGCCTTTCACCTTCTCTGGATACTCTTGACAATATCCGAAG 727
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 498 GGTTTTCTGTTTGCATGGAGGGCTTTCACCTTCTCTGGATACTCTTGATAATATCCGAAG 557
Query 728 CTTGGATCGAATACAAGAGGTTCCACACGAAGGACCAATGTGCGATCTACTCTGGTCTGA 787
||||||||| ||||| |||||||||||||||||||| ||||| ||| || | ||||||||
Sbjct 558 CTTGGATCGGATACAGGAGGTTCCACACGAAGGACCTATGTGTGATTTATTATGGTCTGA 617
Query 788 TCCCGACGATCGTTGTGGATGGGGAATATCTCCTCGTGGTGCTGGTTACACGTTTGGACA 847
|||||| ||||| |||||||||||||||||||| || ||||||||||| || ||||||||
Sbjct 618 TCCCGATGATCGATGTGGATGGGGAATATCTCCACGAGGTGCTGGTTATACATTTGGACA 677
Query 848 GGACATTGCTA-CTCAGTTTAATCATAACAATGGACTGAGTCTGATCTCAAGAGCGCATC 906
||| || || | |||| |||||||| ||||||||||| ||||| || |||||||||||||
Sbjct 678 GGATATCGC-AGCTCAATTTAATCACAACAATGGACTCAGTCTCATTTCAAGAGCGCATC 736
Query 907 AACTTGTAATGGAAGGCTAT-AATTGGTGTCAGGAAAAGAACGTAGTGACAGTGTTTAGT 965
|||| || |||||||| | | || ||||||||||| ||||| || ||||| |||||||||
Sbjct 737 AACTAGTCATGGAAGGTT-TCAACTGGTGTCAGGATAAGAATGTGGTGACTGTGTTTAGT 795
Query 966 GCACCGAACTACTGTTACAGATGTGGAAACATGGCCGCAATTCTTGAGATTGGAGAAAAG 1025
||||| ||||| || ||| |||||||||||||||| || ||||| ||||| ||||| ||
Sbjct 796 GCACCAAACTATTGCTACCGATGTGGAAACATGGCAGCGATTCTAGAGATAGGAGAGAAC 855
Query 1026 ATGGAACAGAACTTCCTTCAATTCGATCCAGCACCTAGACAAGTCGAACCCGATACCACG 1085
||||| || |||||||| || ||||||||||| ||| ||||||| ||||| ||||| ||
Sbjct 856 ATGGAGCAAAACTTCCTCCAGTTCGATCCAGCTCCTCGACAAGTTGAACCTGATACTACC 915
Query 1086 CGCAAGACCCCTGATTAttttttgtgatttcat-t-ttttttct 1127
|| |||||||||||||||||||||||||||| | | ||||||||
Sbjct 916 CGTAAGACCCCTGATTATTTTTTGTGATTTC-TCTGTTTTTTCT 958
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48644842092
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5