BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G59835.1

Length=381
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg925656 jgi|Araly1|925656|scaffold_201217.1                        289    1e-77


> Ahg925656 jgi|Araly1|925656|scaffold_201217.1
Length=393

 Score =  289 bits (156),  Expect = 1e-77
 Identities = 255/302 (84%), Gaps = 10/302 (3%)
 Strand=Plus/Plus

Query  75   TGAAGCAAGAAAGTCGAAAAAGATGG-TCGGTCATGAGCATTTCAATGA-ATATTTGGAT  132
            ||| |||| ||||| ||| ||||||| | ||||||||||||| |||||| | |||||| |
Sbjct  1    TGACGCAAAAAAGTTGAAGAAGATGGAT-GGTCATGAGCATTCCAATGACA-ATTTGGTT  58

Query  133  CCTACTTTTGC-AGGGCATACATTTGGAGTAGTTAAAGAAGATTTTC-TCGAAGtaaaaa  190
            ||  ||||| | |||| | ||| |||| ||| ||||||| || |||| | |||| |||||
Sbjct  59   CCCGCTTTT-CTAGGGTACACACTTGGTGTACTTAAAGATGA-TTTCATAGAAGCAAAAA  116

Query  191  agctaaagaaaattggtgatgaaaataatctaaaaaaCAGATTTATAAATGAGTTTGCGC  250
             | |||||||||||| ||||||||||| |||||| |||| ||||  |||||| |||| ||
Sbjct  117  GGTTAAAGAAAATTGATGATGAAAATAGTCTAAACAACATATTTGCAAATGATTTTGTGC  176

Query  251  CTACTAATCCAGAAGATAGTCTCGGTATTGG-GCATCCAAGAGTTCTAAACAACAAATTT  309
             || |||||||| |||||||| ||||| ||| ||||| | ||||| ||||||||| ||||
Sbjct  177  ATATTAATCCAGGAGATAGTCCCGGTA-TGGAGCATCTAGGAGTTATAAACAACAGATTT  235

Query  310  ACAAATGATTTTGCGCCTACTAATCCAGGAGATAGTCCCGGTATCAGGCATCCAGGAGTT  369
            ||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct  236  ACAAATGATTTTGTGCCTACTAATCCAGGAGATAGTCCCGGTATTGGGCATCCAGGAGTT  295

Query  370  GT  371
            ||
Sbjct  296  GT  297


 Score =  191 bits (103),  Expect = 3e-48
 Identities = 138/155 (89%), Gaps = 1/155 (1%)
 Strand=Plus/Plus

Query  221  taaaaaaCAGATTTATAAATGAGTTTGCGCCTACTAATCCAGAAGATAGTCTCGGTATTG  280
            |||| |||||||||| |||||| |||| |||||||||||||| |||||||| ||||||||
Sbjct  222  TAAACAACAGATTTACAAATGATTTTGTGCCTACTAATCCAGGAGATAGTCCCGGTATTG  281

Query  281  GGCATCCAAGAGTTCTAAACAACAAATTTACAAATGATTTTGCGCCTACTAATCCAGGAG  340
            |||||||| ||||| | ||||||||||||||||||||||||||||| ||||||||| || 
Sbjct  282  GGCATCCAGGAGTTGTTAACAACAAATTTACAAATGATTTTGCGCCAACTAATCCAAGAA  341

Query  341  ATAGTCCCGGTATCAGGCATCCAGGAGTTGTGAAT  375
            ||||||| |||||  ||||||||| |||||| |||
Sbjct  342  ATAGTCCAGGTATTGGGCATCCAG-AGTTGTAAAT  375



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13621545273


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5