BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G59850.1
Length=1497
Score E
Sequences producing significant alignments: (Bits) Value
Ahg907487 jgi|Araly1|907487|Al_scaffold_0002_568 2013 0.0
> Ahg907487 jgi|Araly1|907487|Al_scaffold_0002_568
Length=1494
Score = 2013 bits (1090), Expect = 0.0
Identities = 1369/1504 (91%), Gaps = 17/1504 (1%)
Strand=Plus/Plus
Query 1 ATGCCTTCCGTTCAAATCCGTTCTTCTCCGTCTCA---TTCACAGCC-G-G-CTATGACG 54
||||||||||||||||||||||||||||||||||| ||||||||| | | | ||||||
Sbjct 1 ATGCCTTCCGTTCAAATCCGTTCTTCTCCGTCTCATTCTTCACAGCCGGCGCCGATGACG 60
Query 55 GTTACTGATCTCAAGCAACGAGTCATCGCTTGTCTCAATCGTCTCTCTGATCGCGATACT 114
||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||
Sbjct 61 GTTACTGATCTCAAGCAACGAGTCATCGCCTGTCTCAATCGTCTCTCTGATCGTGACACT 120
Query 115 CTT-GCTCTCGCTGCCGCAGAGCTTGATTCAATCGCTCTTAATCTCTCACCGGAGACTTT 173
|| ||||||| |||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 121 -TTATCTCTCGCCGCCGCAGAGCTTGATTCAATTGCTCTTAATCTCTCACCGGAGAATTT 179
Query 174 CTCTTTATTTATTAACTGTCTTCAGAGTACAGACTCTTCCGCAAAATCTCCGGTGAGGAA 233
|||| | ||||| ||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 180 CTCTCTGTTTATAAACTGTCTTCAGAGTACAGACTCTTCCGCGAAATCTCCGGTGAGAAA 239
Query 234 ACATTGCGTTTCGCTTCTCTCTGTTCTTTCTCGTTCTCATGGCGATTCTCTCGCTCCTCA 293
|||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||
Sbjct 240 ACATTGCGTTTCGCTTGTCTCTGTTCTTTCTCGTTCTCACGGTGATTCTCTCGCTCCTCA 299
Query 294 CCTCTCGAAGATGGTCTCCACCGTTCTCCGCCGCCTCCGTGATCCTGATTCCTCCGTCCG 353
|||||| || ||||||||||| || |||||||||||||||||||| || |||||||||||
Sbjct 300 CCTCTCAAAAATGGTCTCCACTGTCCTCCGCCGCCTCCGTGATCCCGACTCCTCCGTCCG 359
Query 354 TGCCGCTTGTGTTGCCGCTTCCGTTGATATGACTACCAACATCACCGGACAGCCTTTCTC 413
|| ||||||| ||| |||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 360 CGCTGCTTGTGCTGCTGCTTCCGTAGATATGACTACCAACATCACCGGACAGCCATTCTC 419
Query 414 CATCCTTTTCGGACCAATGATCGAAACGGTTATCCACGATTGCGATCCCAATGCGCAGAT 473
|||||| || || || ||||| ||| | |||||||||| |||||||||||||| |||||
Sbjct 420 CATCCTCTTGGGGCCGATGATTGAAGCACTTATCCACGACTGCGATCCCAATGCACAGAT 479
Query 474 CAGCGCTGCTATGTGCCTTGCTGCGGCGGTAGACGCAGCAGATGAGCCGGATGTTGAGCA 533
||||||| |||||||||| || || ||||| || || ||||||| ||||||||||||
Sbjct 480 TGGCGCTGCCGTGTGCCTTGCGGCTGCAGTAGATGCCGCCGATGAGCTGGATGTTGAGCA 539
Query 534 ACTGCAGAAGGCCCTGCCGAAGATTGGGAAGTTGCTTAAATCGGAAGGTTTCAAGGCGAA 593
|||||||||||| || || || || ||||| ||||| ||||| || ||||||||||||||
Sbjct 540 ACTGCAGAAGGCACTTCCTAAAATCGGGAAATTGCTAAAATCTGATGGTTTCAAGGCGAA 599
Query 594 AGCGGAACTTCTTGGAGCCATAGGAACCGTAATCGGCGCTGTTGGCGGTCGAAACAGCGA 653
|||||||||||||||||||||||| | |||||| ||| |||||||||| |||||||||||
Sbjct 600 AGCGGAACTTCTTGGAGCCATAGGGAGCGTAATTGGCACTGTTGGCGGCCGAAACAGCGA 659
Query 654 AAAGGCGGTGCTAGACTGGCTTTTACCAAACGTCTCGGAGTTTCTAAGCAGCGACGATTG 713
||||||||||||||| |||||||||||||||||||| |||||||| |||||||| |||||
Sbjct 660 AAAGGCGGTGCTAGATTGGCTTTTACCAAACGTCTCAGAGTTTCTTAGCAGCGATGATTG 719
Query 714 GCGTGCGAGGAAAGCTGCTGCGGAGGCAATGGCTAGAGTGGCTATGGTAGAAGAAGAATT 773
||||||||| |||||||| || ||||| ||||||||||||||| ||| ||||||||| |
Sbjct 720 GCGTGCGAGAAAAGCTGCCGCAGAGGCGATGGCTAGAGTGGCTTTGGCGGAAGAAGAACT 779
Query 774 AGCTCCACTGTATAAGAAGACATGTCTAGGTATTCTTGAGAGCAGACGATTCGATAAGGT 833
|||||| ||||||||||||||||| ||| |||||||||||||||| ||| ||||||||
Sbjct 780 AGCTCCTTTGTATAAGAAGACATGTGTAGCTATTCTTGAGAGCAGAAAATTTGATAAGGT 839
Query 834 CAAACTTGTTAGAGAGACAATGAATCGTACATTGGGTTTATGGAAGCAACTTGAAGGTGA 893
|||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||
Sbjct 840 CAAACTTGTTAGAGAGACGATGACTCGTACATTGAGTTTATGGAAGCAACTTGAAGGTGA 899
Query 894 TTCAACAGAGGTCTCAGAGTCTTCTTCCTCCTCCAAATCAGCTTCTTCTGGTTTGTCTGC 953
||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||
Sbjct 900 TTCAACAGAGGTCTCAGAGTCATCTTCCTCCTCCAAAACAGCTTCTTCTGGTTTCTCTGC 959
Query 954 GACTTCAGGAAAGAGAAGCAACACATTGAAAGGCAAAGATAGGAATTTAAACACACCATT 1013
||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||| |
Sbjct 960 GACTTCAGGAAAGAGAAGCAATACATTGAGAGGCAAAGATAGGAATTTAAACGCACCACT 1019
Query 1014 AAGCTCAAAGTCGAATGATGTTGAGCCATTAGATCGTGGTGACACTCCTAAGGATGTTGA 1073
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1020 AAGCTCAAAGTCAAATGATGTTGAGCCTTTAGATCGTGGTGACACTCCTAAGGATGTGGA 1079
Query 1074 GCAGGAAGCTGTTGTGTCGAAAGAGAAGCGGAATCGTTCGACATTGGGAGCTAAACGGGT 1133
|||||||||||| || ||||||||||||||||| | || | || |||||||||||
Sbjct 1080 GCAGGAAGCTGTCGTATCGAAAGAGAAGCGGAAAA---C-AC-T-GGAAGCTAAACGGGC 1133
Query 1134 TCTGTTCCCGGCAAAGATGCATAAGGTCAAAGAGAATGGGTCGAACAAGTCACAAGTTGT 1193
|||||| |||||||||| | |||||||||||||||||| |||||||||||||||||||||
Sbjct 1134 TCTGTTTCCGGCAAAGACGTATAAGGTCAAAGAGAATGCGTCGAACAAGTCACAAGTTGT 1193
Query 1194 TCAGAGTAGTGATGAGGAGAGTCCTAAAACTGACAGTGGTAGTAGCAGTTCTTCTCAGGC 1253
||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||
Sbjct 1194 TCAGAGTAGTGATGAGGAGAGTCCTAAAACTGAAAGTGGTAGTAGCAGTTCT-C--AGGC 1250
Query 1254 AAAGAGTAATGCAGAAGAGTTGTCTCTGATAAGACACCAGATTACACAGATCGAAAAACA 1313
||||| |||||||||||||||||||||||||||| ||||||| || ||||||||||||||
Sbjct 1251 AAAGAATAATGCAGAAGAGTTGTCTCTGATAAGAAACCAGATCACTCAGATCGAAAAACA 1310
Query 1314 GCAGTCCAGTCTGTTAGATCTCTTTCAGAAGTTCATGGAGAGCTCGCATAACGGAATGCA 1373
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1311 ACAGTCCAGTCTGTTAGATCTCTTTCAGAAGTTCATGGAGAGCTCGCAGAACGGTATGCA 1370
Query 1374 ATCTCTAGAGAGACGAGTACGTGGTCTAGAAACATCCTTCAGCGTAATCTCCACTGATTT 1433
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1371 ATCTCTGGAGAGACGAGTACGTGGTCTAGAAACATCCTTCAGCGTAATCTCCACTGATTT 1430
Query 1434 ACTAGTCTCTCGCAGCATAACACAAAATGGAAACCACAAACGAAACGCCTGTCGACAGAA 1493
|| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1431 GCTGGTCTCTCGCACCATAACACAAAATGGAAACCCCAAACGAAACGCCTGTCGACAGAA 1490
Query 1494 CTGA 1497
||||
Sbjct 1491 CTGA 1494
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56030750395
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5