BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G59890.2
Length=4199
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925075 jgi|Araly1|925075|scaffold_200636.1 1720 0.0
Ahg471159 jgi|Araly1|471159|fgenesh2_kg.1__1113__AT1G10450.1 1496 0.0
Ahg334309 jgi|Araly1|334309|fgenesh1_pg.C_scaffold_1000874 466 6e-130
Ahg949339 jgi|Araly1|949339|scaffold_801226.1 150 7e-35
Ahg952456 jgi|Araly1|952456|scaffold_7400002.1 145 3e-33
> Ahg925075 jgi|Araly1|925075|scaffold_200636.1
Length=3500
Score = 1720 bits (931), Expect = 0.0
Identities = 1265/1419 (89%), Gaps = 51/1419 (4%)
Strand=Plus/Plus
Query 1662 AGATGCATTGAGCGGTTGTACGGGGATTATGGGCTTGATGTCATGGATTTTCTGAAGAAG 1721
||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1150 AGATGCATTGAGCGGTTATACGGGGATTATGGGCTTGATGTCGTGGATTTTTTGAAGAAG 1209
Query 1722 AATTCTCATATC-GCCTTACCTGTGATTCTAACACGCTTGAAGCAGAAACAAGAAGAATG 1780
| |||||||| | |||||||| ||||| ||||||||||||||||| |||||| |||||||
Sbjct 1210 AGTTCTCATA-CTGCCTTACCGGTGATACTAACACGCTTGAAGCAAAAACAAAAAGAATG 1268
Query 1781 GGCTAGGTGTCGCGCTGATTTCAGGAAAGTATGGGCTGAAGTATATGCTAAGAATCATCA 1840
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1269 GGCTAGGTGTCGCTCTGATTTCAGGAAAGTATGGGCTGAAGTATATGCTAAGAATCATCA 1328
Query 1841 CAAATCACTCGATCATCGTAGTTTCTATTTCAAGCAGCAGGACTCCAAGAATTTAAGCAC 1900
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1329 AAAATCACTCGATCATCGTAGTTTCTATTTCAAGCAGCAGGACTCCAAGAATTTGAGCAC 1388
Query 1901 AAAAGGTTTAGTGGCGGAGATTAAAGATATCAGTGAGAGAAAGCATAAAGAAGACCTGCT 1960
|||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||| |
Sbjct 1389 AAAAGGTTTAGTGGCGGAAATTAAAGATATCAGCGAGAGGAAGCATAAAGAAGACCTTAT 1448
Query 1961 TCGTGCCATTGCTGTTGGAACTAAGCCCTCTTTCACCCCAGATGTGGAGTTCATTTATAC 2020
||||||| |||||||||||| ||| ||| |||||||||||||| ||||||| | ||||||
Sbjct 1449 TCGTGCCGTTGCTGTTGGAAATAAACCCGCTTTCACCCCAGATATGGAGTTTAGTTATAC 1508
Query 2021 TGATACAAAAGTTCATACTGACCTATAT-AAGCTAATCAAGTATTATTGTGAGGAAATAT 2079
||||||| |||||||||||||||||||| || |||||||||||||||||||| |||||||
Sbjct 1509 TGATACACAAGTTCATACTGACCTATATCAA-CTAATCAAGTATTATTGTGAAGAAATAT 1567
Query 2080 GTGCTACTGAACAGTCGGATAAAGTAATGAAGCTATGGGTAACCTTTTTGGAGCCCATGT 2139
||||||||||||| |||||||||| ||| |||| |||||||| |||||||| || |||
Sbjct 1568 ATGCTACTGAACAGGCGGATAAAGTCATGGAGCTGTGGGTAACTTTTTTGGAACCAATGC 1627
Query 2140 TTGGCGTTCCTTCTAGGTCTGAAACTATTGAGACAATGAAAGATGTTGCAAAGATCGAAG 2199
|||| ||||||||||||||| |||||| |||||||||||| ||||||||||| |||||||
Sbjct 1628 TTGGTGTTCCTTCTAGGTCTCAAACTAATGAGACAATGAAGGATGTTGCAAATATCGAAG 1687
Query 2200 ACAACCAAGAGCACCATGATGCAAGTGAGGCAGTGAAGGAAAATACATGTGACGGTTCTA 2259
||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 1688 ACAACCAAGCGCACCATGATGCATGTGAGGCAGTGAAGGAAAACACATGTGACGGTTCTT 1747
Query 2260 TGGCCTCAAACCTTAAACCGTTAACACCTCCAAAAAT-GCCTAACAAAGAAAACCCAATG 2318
|||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 1748 TGGCCTTAAACCTTAAACCGTTAACACCTCCAAAA-TCGCCTAACAAAGAAAACCCAAT- 1805
Query 2319 AT-ACAAGGAAGCTCTTTTGCGCAAGATTTGCCAGTCAACACAGGAGAAAGCATTCAGCA 2377
|| |||||||||||||||| |||||||| | ||| |||| ||| |||||||||||| ||
Sbjct 1806 ATTACAAGGAAGCTCTTTTCCGCAAGATATCCCACTCAATACACTAGAAAGCATTCATCA 1865
Query 2378 AGATAAACTGCATGATGTTGCAGCTATAACTAATGAGG------A---TAGCCAGCCTTC 2428
||||||| ||||||||| |||| ||||||||||||||| | ||||||||||||
Sbjct 1866 AGATAAAATGCATGATGGTGCAACTATAACTAATGAGGTTCTGCAGGATAGCCAGCCTTC 1925
Query 2429 CAAACTGGTGTCAACCAGAAACGATTTGATAATGGAGGGTGTAGAGAATCGTAGTAGGGT 2488
||||||||||||| ||||||| ||| |||||||| |||||||||||||| |||||| |||
Sbjct 1926 CAAACTGGTGTCACCCAGAAATGATATGATAATGAAGGGTGTAGAGAATTGTAGTAAGGT 1985
Query 2489 CAGTGATGTATCAATGGGAGGGCATAAGGTCGAGCGAGAAGAGGGTGAATTATCCCCCAC 2548
||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||
Sbjct 1986 TAGTGATGTATCAATGGGAGAGCATAAGGTCGAGCGTGAAGAGGGTGAATTATCTCCCAC 2045
Query 2549 TGAAAGTTGCGAGCAAGAAAAT-TTCGAGGTTTATAAAGAGAATGGGCTCGAGCCTGTGC 2607
||||| || |||||| |||||| || |||||||||||||||||||||||||||||||| |
Sbjct 2046 TGAAATTTTCGAGCACGAAAATATT-GAGGTTTATAAAGAGAATGGGCTCGAGCCTGTAC 2104
Query 2608 AGAAACTACCAGATAATGAAATAAGTAATACAGACCGAGAACCCAAAGAGGGTGCATGTG 2667
||||||| ||||| |||||||||||||||| ||| |||||| |||||||||||||| ||
Sbjct 2105 AGAAACTGCCAGACAATGAAATAAGTAATAAAGATCGAGAATACAAAGAGGGTGCATATG 2164
Query 2668 GTACTGAAGCTGTAACAAGGAGCAATGCCCTCCCTGAAGATGATGATAATAAAATAACTC 2727
|||||||||||| | |||| |||||| | |||||||||||||| |||||||| ||||
Sbjct 2165 GTACTGAAGCTGGAGCAAGAAGCAATATCAAACCTGAAGATGATGAAAATAAAATTACTC 2224
Query 2728 AAAAGTTATCAGAAGGGGATGAAAATGCCTCGAAATTTATTGTCTCAGCAAGCAAGTTTG 2787
||||||||||||||||||| ||||||||||| ||| ||||||||||| ||||||||||||
Sbjct 2225 AAAAGTTATCAGAAGGGGAAGAAAATGCCTCTAAAATTATTGTCTCAACAAGCAAGTTTG 2284
Query 2788 GTGGCCAAGTTTCTTCCGATGAAGAGCATAAAGGAGCT--GA---G--A--G---TGAAA 2835
|||||||||||||||||||||||||||||||||||||| || | | | ||| |
Sbjct 2285 GTGGCCAAGTTTCTTCCGATGAAGAGCATAAAGGAGCTATGAACTGTGACCGGCGTGATA 2344
Query 2836 ATGAGGCTG-GAG-G-----GA---TGG-----T--T-AATTCCAACGAGGGTGAAGATG 2877
|| ||||| ||| | || ||| | | ||||| ||||||| ||||||||
Sbjct 2345 GTGTGGCTGAGAGTGAAAACGAGGCTGGAGGGATGGTTAATTCTAACGAGGTTGAAGATG 2404
Query 2878 GATCCTTTT-TCACATTTTCAGAACGGTATCTGCAACCTGTAAAGCCCCTTGCAAAGCAT 2936
|||| |||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 2405 GATC-TTTTGTCACATTTTCAGAACGGGATCTGCAACGTGTAAAGCCCCTTGCAAAGCAT 2463
Query 2937 GTGCCTGGGACACTGCAAGCAAGTGAATGCGACACCCGGAATGATTCTCGAGTTTTCTAT 2996
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 2464 GTGCCTGGGACACTGCAAGCAAGTGAATGTGACTCCCGGAATGATTCTCGAGTTTTCTAT 2523
Query 2997 GGGAATGATTCACTCTATGTGCTTTTTAGGCTTCATCAA 3035
|||||||| ||| | ||| ||||||||||||||||||||
Sbjct 2524 GGGAATGACTCATTTTATATGCTTTTTAGGCTTCATCAA 2562
Score = 1605 bits (869), Expect = 0.0
Identities = 1072/1165 (92%), Gaps = 33/1165 (3%)
Strand=Plus/Plus
Query 361 AAGAGATGAAGAGGGTTAGAGAAGAGGTTTACGTTGAAC-CACAAATGCGAGGACCTACT 419
|||||||||||||||||||||| ||||||||||||| || ||| || |||| |||||||
Sbjct 17 AAGAGATGAAGAGGGTTAGAGATGAGGTTTACGTTG-ACGGACAGATACGAGCACCTACT 75
Query 420 GTTTCCTCTCGAGGAGAAACAAATGGTAGGCCTTCAACGATTAGTGGCGGAGGAACAACG 479
|||||||||||||||||||||||||| ||||||| ||||||| |||| |||||||| |||
Sbjct 76 GTTTCCTCTCGAGGAGAAACAAATGGAAGGCCTTTAACGATTGGTGGAGGAGGAACTACG 135
Query 480 GGAGGGCTAACAACAGTTGATGCTTTGACATATCTTAAAGCTGTGAAGGATATGTTTCAA 539
|||| ||||||||||| || ||||||||||||||| |||||||||||||||||||||||
Sbjct 136 GGAGCGCTAACAACAGATGCTGCTTTGACATATCTCAAAGCTGTGAAGGATATGTTTCAC 195
Query 540 GACAACAAAGAGAAATATGAGACTTTCCTTGGAGTCATGAAGGACTTCAAAGCTCAGAGA 599
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 196 GACAATAAAGAAAAATATGAGACTTTCCTTGGAGTCATGAAGGACTTCAAAGCTCAGAGA 255
Query 600 GTTGACACTAATGGCGTCATAGCAAGAGTAAAAGATTTGTTCAAGGGCTATGACGACTTA 659
||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||
Sbjct 256 GTTGACACTAATGGCGTCATAACAAGAATCAAAGATTTGTTCAAGGGCTATGACGACTTA 315
Query 660 CTTTTGGGTTTTAATACCTTCTTACCTAAGGGGTACAAAATTACCCTTCAGCCTGAGGAT 719
||||||||||||||||||||||| || ||||||||| |||||||||||||||| ||||||
Sbjct 316 CTTTTGGGTTTTAATACCTTCTTGCCGAAGGGGTACCAAATTACCCTTCAGCCCGAGGAT 375
Query 720 GAGAAACCTAAGAAGCCAGTGGATTTCCAAGTAGCTATCGAATTTGTCAACAGGATTAAG 779
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 376 GAGAAACCTAAGAAGCCAGTGGATTTCCAAGTAGCTATCGAATTTGTCAATAAGATTAAG 435
Query 780 GCGCGATTTGGAGGTGATGACCGTGCATATAAAAAATTTCTAGACATCTTGAACATGTAT 839
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 436 GCGCGATTTGGAGGTGATGAACGTGCATATAAAAAATTCCTAGACATCTTGAACATGTAT 495
Query 840 AGAAAGGAAACCAAGTCCATCAACGAGGTCTATCAAGAGGTTACTCTGTTGTTCCAGGAC 899
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 496 AGAAAGCAAACCAAGTCCATCAACGAGGTCTATCAAGAGGTTACTCTGTTGTTCCAGGAC 555
Query 900 CATGAAGATCTGCTCGGGGAGTTTGTTCATTTCTTACCAGATTTTCGAGGATCAGTTTCT 959
||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||
Sbjct 556 CATGAAGATCTGCTCGGAGAGTTTTTTCATTTCTTACCTGATTTTCGAGGATCAGTTTCT 615
Query 960 GTTAATGACCCTCTTTTCCAG-AGGAACACAATACCGCGTGATAGAAATTCTA-CATTTC 1017
|||||| |||||||||| ||| ||||| ||| |||||| |||||||||||| | ||||||
Sbjct 616 GTTAATAACCCTCTTTT-CAGAAGGAATACAGTACCGCATGATAGAAATTC-ACCATTTC 673
Query 1018 CTGGCATGCATCCAAAGCATTTTGAGAAGAAAATAAAACGGAGTAGGCATGATGAGTATA 1077
|| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 674 ATGCCATGCATCCAAAGCATTATGAGAAGAAAATAAAACGGAGTAAGCATGATGAGTATA 733
Query 1078 CTGAACTCTCTGATCAACGAGAGGATGGTGATGAGAACCTTGTGGCCTACTCTGCTGGTA 1137
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 734 CTGAACTCTCTGATCAACGAGAAGATGGTGATGAGAACCTTGTGGCCTACTCTGCTGGTA 793
Query 1138 ATTCTCTGGGAAAATCCCTTGCTAATCAAGGTCAATGGCCAGGATATCCTAAGGTAGAGG 1197
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 794 ATTCTCTGGGAAAATCCCTTGCTAATCATGGTCAATGGCCAGGATATCCTAAGGTAGAGG 853
Query 1198 ACACCGAGGGGATTCAAATTTATGAAAGTAACGGGGGCCATGAAAGAGATCCAGACATCG 1257
||||||||||| ||| | ||| | ||| || | || | || |
Sbjct 854 ACACCGAGGGG------ATTCA--AAA-T---------TATG-AA-A-AT--A-AC--GG 887
Query 1258 GAAGTCaaaaaaaTCTACTGTCTACAAACCATATGGCCAAGGCAATAAATGAACTGGATC 1317
| | || ||||||||| |||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 888 GGATTC-AAAAAATCTGCTGTCTACCAACCATATGGCCAAGGCAATAAATGAATTGGATC 946
Query 1318 TTACTGACTGTGCACAATGTACACCAAGTTATCGTCGCTTGCCAGATGATTATCCTATTC 1377
|| ||| ||| ||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 947 TTGCTGGCTGCGCACAATGTACACCAAGTTATCGTCGCCTGCCAGATGATTATCCCATTC 1006
Query 1378 AGATTCCAAGCTACAGAAATTCACTTGGTGAAAAGGTGCTTAACGATCATTGGGTATCTG 1437
| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1007 ATATTCCAAGCTACAGAAATTCACTTGGTGAAAAGGTACTTAATGATCATTGGGTATCTG 1066
Query 1438 TCACATCGGGGAGTGAGGATTACTCATTCAAACACATGCGCAAAAATCAGTATGAAGAAA 1497
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1067 TGACATCGGGGAGTGAGGATTACTCATTCAAACACATGCGCAAAAACCAGTATGAAGAAA 1126
Query 1498 GCTTGTTTCGATGTGAGGATGATAG 1522
|||||||||||||||||||||||||
Sbjct 1127 GCTTGTTTCGATGTGAGGATGATAG 1151
Score = 1262 bits (683), Expect = 0.0
Identities = 795/849 (94%), Gaps = 8/849 (1%)
Strand=Plus/Plus
Query 3039 TTGTACGAGAGAATACAATCAGCAAAGATACATTCAGAGAGGAAATGGAAAGCTCCAGAT 3098
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 2650 TTGTACGAGAGAATACAATTAGCAAAGATACATTCAGAGAGGAAATCGAAAGCTCCAGAT 2709
Query 3099 AGCACATCTACTGATTCTTATACCAGGTTCATGGAAGCCCTTTACAATTTACTTGATGGC 3158
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 2710 AGCACATCTACTGATTCTTATACCAGGTTCATGGATGCCCTTTATAATTTACTTGATGGC 2769
Query 3159 TCTAGCGACAATACAAAGTTTGAAGATGAATGTCGAGCTATTATCGGAGCACAATCATAT 3218
|||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||
Sbjct 2770 TCTAGCGACAATACAAAGTTTGAAGATGAATGCCGAGCTATTATTGGAGCACAGTCATAT 2829
Query 3219 GTTCTCTTCACATTGGACAAGCTAGTTCAAAAGTTTGTTAAGCATCTTCACGCAGTCGCA 3278
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2830 GTTCTCTTCACATTGGACAAGCTAGTTCAAAAGTTTGTTAAGCATCTTCATGCAGTCGCA 2889
Query 3279 GCTGATGAGACAGACACCAAGCTTCTGCAGCTATATGCATACGAGAACTACAGAAAACCA 3338
|| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 2890 GCGGATGAGACAGACACCAAGCTTCTGCAACTATATGCATACGAGAACTATAGAAAACCT 2949
Query 3339 GGAAGATTCTTTGATATAGTGTACCATGAGAATGCTCGAGCCCTTCTCCATGATCAGAAC 3398
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2950 GGAAGATTCTTTGATATGGTGTACCATGAGAATGCTCGAGCCCTTCTCCATGATCAGAAC 3009
Query 3399 ATATACAGGATTGAATATTCATCTGCCCAAACCCGTCTCG-GAATTCAACTTATGAACAG 3457
|||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 3010 ATATACAGAATTGAATATTCATCTGCCCAAACCCGTCTCTCGA-TTCAACTTATGAACAG 3068
Query 3458 CTGGAATGATCAGCCTGAAGTTACAGCTGTAACAGTGGAACCAGGTTTTGCTAATTATCT 3517
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3069 AGGGAATGATAAGCCTGAAGTTACAGCTGTAACAGTGGAACCAGGTTTTGCTAATTATCT 3128
Query 3518 GCAGAATGACTTTCTTTCGTTTGTCAGTGATGAAGAGAAACCCGGACTATTTCTGAAAAG 3577
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 3129 ACAGAATGACTTTCTCTCGTTTGTCAGTGATGAAGAGAAACCCGGACTATTTCTGAAGAG 3188
Query 3578 GAACAAGGCAAAATTAAGTGGTCCGGGTGAAGAATCT-CTAGGGATGTCACGTGCCTTGG 3636
||||||||| |||||||| ||||||||||| |||||| | ||||| ||| ||||| |||
Sbjct 3189 GAACAAGGCGAAATTAAGCGGTCCGGGTGATGAATCTTC-AGGGACGTCGCGTGCAATGG 3247
Query 3637 AAGGATTGAACATTATCAATGAGGTTGAATGTAAGATAGCTTGCAGTTCTTTCAAGGTCA 3696
| ||| | || |||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 3248 ACGGACTAAAAATTATCAATGAGGTCGAATGTAAGATAGATTGCAGTTCTTTCAAGGTCC 3307
Query 3697 AGTATGAACCACACACAGCAGATCTTTTATATAGAAGAAAGCAGAAGAAAGCAACACTGA 3756
||||||||||| ||||| ||||| |||||||||||||||||||||||||||||| |||||
Sbjct 3308 AGTATGAACCAAACACAACAGATATTTTATATAGAAGAAAGCAGAAGAAAGCAATACTGA 3367
Query 3757 ATCCAACTGGACCTGAAAATGTTAAAACCTCTGATAGTAGTGAACTCTCGAGAAAG-AAA 3815
|||||||||| ||||||||||||||||| |||||||||| |||||||||||||||| |||
Sbjct 3368 ATCCAACTGGGCCTGAAAATGTTAAAACTTCTGATAGTATTGAACTCTCGAGAAAGGAAA 3427
Query 3816 CGAATATCGCGCTTTCACATGAGTCTTAACCGCAGACTTGTCGCCTTGCCTTAACT-CAA 3874
|||||||||||||||||| ||||||||||||||||||||| || ||||||||| | |||
Sbjct 3428 -GAATATCGCGCTTTCACAAGAGTCTTAACCGCAGACTTGTTGCTTTGCCTTAA-TGCAA 3485
Query 3875 GAACGCCGT 3883
||||| |||
Sbjct 3486 GAACGTCGT 3494
> Ahg471159 jgi|Araly1|471159|fgenesh2_kg.1__1113__AT1G10450.1
Length=3734
Score = 1496 bits (810), Expect = 0.0
Identities = 1958/2495 (78%), Gaps = 148/2495 (6%)
Strand=Plus/Plus
Query 1302 ATAAATGAACTGGATCTTACTGACTGTGCA--CAATGTACACCAAGTTATCGTCGCTTGC 1359
|||||||| || |||||| |||| ||||| || ||||| ||||||||||| | | |||
Sbjct 981 ATAAATGAGCTTGATCTTTCTGA--GTGCACTCAGTGTACCCCAAGTTATCGACTCCTGC 1038
Query 1360 CAGATGATTATCCTA-TTCAGATTCCAAGCTACAGAAATTCACTTGGTGAAAAGGTGCTT 1418
|| | |||||| | | || |||| ||||||||||||||| |||||||| ||||| ||
Sbjct 1039 CAAAGGATTATGC-AGTTGAGATCCCAAGCTACAGAAATACACTTGGTAAAAAGACACTC 1097
Query 1419 AACGATCA-TTGGGTATCTGTCACATCGGGGAGTGAGGATTACTCATTCAAACACATGCG 1477
|| || || | |||||||||||| || |||||||| ||||||||||||| || |||||
Sbjct 1098 AATGACCACCT-GGTATCTGTCACCTCAGGGAGTGAAGATTACTCATTCAGTCATATGCG 1156
Query 1478 CAAAAATCAGTATGAAGAAAGCTTGTTTCGATGTGAGGATGATAGGTTTGAGTTGGACAT 1537
|||||| ||||||||||||||||||||||| ||||||||||| |||| ||| |||||||
Sbjct 1157 CAAAAACCAGTATGAAGAAAGCTTGTTTCGGTGTGAGGATGACAGGTATGAAATGGACAT 1216
Query 1538 GTTACTA-GAGTCTGTAAGTGCAGCCATCAAGCGTGTGGAAAGTCTTCTGGAAAAGATTA 1596
||||||| || ||||||||| ||||||| || | ||||||| |||||| || ||||| |
Sbjct 1217 GTTACTAGGA-TCTGTAAGTTCAGCCATTAAACACGTGGAAATTCTTCTCGAGAAGATGA 1275
Query 1597 ACAACAATACAATCTCTA-TAGAGAC-ACCAATTTGTATTAG-AGAACACTTATCAGAGC 1653
|||||||||| ||||| | |||| | | | || |||| | | | ||||||||||||
Sbjct 1276 ACAACAATACTATCTC-AGTAGACTCTA-CTATATGTA-TCGAAAAACACTTATCAGCTA 1332
Query 1654 TGAACCTAAGATGCATTGAGCGGTTGTACGGGGATTATGGGCTTGATGTCATGGAT-TTT 1712
| ||| | ||||||||||||||||| ||||| ||| |||||||||||||||||||| |||
Sbjct 1333 TAAACTTGAGATGCATTGAGCGGTTATACGGTGATAATGGGCTTGATGTCATGGATCTTT 1392
Query 1713 CTGAAGAAGAATTCT-CATATCGCCTTACCTGTGATTCTAACACGCTTGAAGCAGAAACA 1771
|||||||||| | | |||| ||| ||||| ||||| ||||| |||||||||||||| ||
Sbjct 1393 -TGAAGAAGAA-TATGCATAGCGCTTTACCGGTGATACTAACGCGCTTGAAGCAGAAGCA 1450
Query 1772 AGAAGAATGGGCTAGGTGTCGCGCTGATTT-CAGGAAAGTATGGGCTGAAGTATATGCTA 1830
|||||||||||| ||||| | | ||||||| || |||||| |||||||||||||||||||
Sbjct 1451 AGAAGAATGGGCAAGGTGCCACTCTGATTTCCA-GAAAGTTTGGGCTGAAGTATATGCTA 1509
Query 1831 AGAATCATCACAAATCACTCGATCATCGTAGTTTCTATTTCAAGCAGCAGGACTCCAAGA 1890
||||||| || || ||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1510 AGAATCACCATAAGTCACTAGATCATCGTAGTTTCTATTTCAAGCAGCAGGACTCTAAGA 1569
Query 1891 ATTTAAGCACAAAAGGTTTAGTGGCGGAGATTAAA-GATATCAGTGAGAGAAAGCATAAA 1949
| || ||||||||| |||||||||| || | |||| ||||||||||||| ||||||| ||
Sbjct 1570 ACTTGAGCACAAAATGTTTAGTGGCAGA-AGTAAAAGATATCAGTGAGAAAAAGCATCAA 1628
Query 1950 GAAGACCTGCTTCGTGCCATTGCTGTTGGAACTAAGCCCTC-TTTCACCCCAGATGTGGA 2008
||||| ||||||| || ||| ||||| || || |||||| ||| || || ||| ||||
Sbjct 1629 GAAGATCTGCTTCAAGCTATTTCTGTTAGAGTTATGCCCTCATTT-ACTCCGGATTTGGA 1687
Query 2009 GTTCATTTATACTGATACA-AAAGTTCAT-ACTGACCTATATAAGCTAATCAAGTATTAT 2066
||||| ||| ||||| | ||| |||| | || || ||| |||||||||||||||
Sbjct 1688 GTTCAACTATTGTGATATACAAA-TTCACGAG-GATCTCTATCTGCTAATCAAGTATTAC 1745
Query 2067 TGTGAGGAAATATGTGCTACTGAACAGTCGGATAAAGTAATGAAGCTATGGGTAACCTTT 2126
||||| ||||||||||| |||||||| || ||||| || |||||||| ||| ||||||||
Sbjct 1746 TGTGAAGAAATATGTGCCACTGAACAATCAGATAAGGTGATGAAGCTGTGGATAACCTTT 1805
Query 2127 TTGGAGCCCATGTTTGGCGTTCCTTCTAGGTCTGAAACTATTGA-GACAATGAAAGATGT 2185
|| ||||||||||||||| ||| ||| |||||| || || | | | || |||||||
Sbjct 1806 TTAGAGCCCATGTTTGGCATTCTTTCGAGGTCTCAAGGTAACCATG-CTCTGGAAGATGT 1864
Query 2186 -TGCAAAGATCGAAGA-CAACCAAGAGCACCATGATGCAAGTGAGGCAGTGAAGGAAAAT 2243
| ||||| | ||| | ||||||||| || |||||| | | |||||||||||| |
Sbjct 1865 GT-CAAAGTT-GAAAAACAACCAAGAATTGCAAGATGCATGCGTGGCAGTGAAGGACA-- 1920
Query 2244 ACATGTGACGGTTCTATGGCCTCAAACCTTAAACCGTT-AACA-CCTCCAAAAATGCCT- 2300
|| | | |||| || ||||||||||||| | || | || || ||| | | |
Sbjct 1921 -CA-G---C--TTCTG-GG--TCAAACCTTAAACA-TCCAATATCC-CCGAAACTAC-TG 1967
Query 2301 AACAAAGAAAACCCAATGATACAAGGAAGCTCTTTTGCGCAA-GATTTGC-CAGTC-AAC 2357
|||||||| || ||| || |||||||| ||| | || || ||| | | ||| | ||
Sbjct 1968 AACAAAGATAATTCAACAATGCAAGGAAGTTCTCCT-CGGAAAGATGT-CTCAG-CGAAT 2024
Query 2358 ACAG-GAGAAA--GCATTCAGCAAGATAAACTGCATGATGTTGCAGCTATAACTAATGAG 2414
| | || ||| || | |||| ||||| ||||| |||| ||||||||| |||||||||
Sbjct 2025 ATAATGA-AAACTGC-T-CAGCCCGATAAGCTGCAGGATGATGCAGCTATGACTAATGAG 2081
Query 2415 GATAGCCAGCCTTCCAAACTGGTGTCAACCAGAAACGATTTGATAATGGAGGGTGTAGAG 2474
| || ||| |||||||||| |||||| ||||||| ||| ||||||||||| || || |
Sbjct 2082 GTTATTCAGTCTTCCAAACTTGTGTCACCCAGAAATGATCAGATAATGGAGGATGAAGGG 2141
Query 2475 AATCGTAGTAGGGTCAGTGATGTATCAATGGGAGGGCATAAGGTCGAGCGAGAAGAGGGT 2534
|||| || | || | | || | ||| ||| | |||| |||| |||||||||||||||
Sbjct 2142 AATCATA-T-GGTTAAC-GAAGCATCGGTGGAAAAGCATGAGGTTGAGCGAGAAGAGGGT 2198
Query 2535 GAATTATCCCCCACTGAAAGTTGCGAGCAAGAAAA-TTTCGAGGTTTATAAAGAGAATGG 2593
|||||||| ||||| ||| | ||||||| || ||| |||||| || | |||||||
Sbjct 2199 GAATTATCTCCCACCCCCAGTCGTGAGCAAGGCAACTTT-GAGGTTAATGGACAGAATGG 2257
Query 2594 GCT-CGAGCCTGTGCAGAAAC-T-ACCAGATAATGAAATAAGTAATACAGACCGAGAACC 2650
|| | ||||| | || ||| | || || |||| || ||| |||| ||||| || |
Sbjct 2258 -CTTCAAGCCTTTACA-AAAGGTGACG-GACAATGTAAGAAGCAATAAAGACC-AG--C- 2310
Query 2651 CAAAGAGGGTGCATGTGGTACTGAAGCTGTAACAAGGAGCAATGCCCTCCCTGAAGATGA 2710
|||| | |||| || | ||| | | ||| || | || | | | |||||||||
Sbjct 2311 -AAAG----T---TGTGATA-TAAAGG-G-AGCAAAGAACGATACTCGCGGTGAAGATGA 2359
Query 2711 TGAT-AATAAAATAACTCAAAAGTTATCAGAAGGGGA-TGAAAATGCCTC-GAAATTTAT 2767
| || ||||| ||| ||||||||||| || | ||| | |||||| ||||| |
Sbjct 2360 CAAACAAGAAAATTG-TCACAAGTTATCAGA-GGATAATGAGACTGCCTCTGAAATGC-T 2416
Query 2768 TGTCTCAGCAAGCAAGTTTGGTGGCCA--A-GTTT-CTTCCGA-TGAAGAGCA-TAAAGG 2821
||| |||| || ||||||| || | || | | | | || | | || | ||| ||
Sbjct 2417 TGTTTCAGGAACCAAGTTTAGTTGTCATGAAGAGCACAACAGAGTTACGAACTGTAATGG 2476
Query 2822 AGCTGAGAGTGAAAATGAGGCTGGAGGGATGGTTAATTCCAACGAGGGTGAAGATGGATC 2881
|| | | || | || ||||||| ||||| || | || || ||||||||||||||
Sbjct 2477 -GC-GTG-GT-AG--TGTTGCTGGAGAGATGGCTAGTGGAAATGAAGGTGAAGATGGATC 2530
Query 2882 CTTTTTCACATTTTCAGAACGGTATCTGCAACCTGTAAAGCCCCTTGCAAAGCATGTGCC 2941
|||| || ||||||||||||| ||||||| ||||||| || |||| |||||| || |
Sbjct 2531 CTTTG-CA--TTTTCAGAACGGTTTCTGCAAACTGTAAAACCTGTTGCCAAGCATCTGTC 2587
Query 2942 TGGGACACTGCAAGCAAGTGAA--TGCGACACCCGGAATGATTCTCGAGTTTTCTATGGG 2999
| || || ||||||| |||||| | | | ||| |||||||||| |||||| || |||
Sbjct 2588 TTGGCCATTGCAAGCTAGTGAAACTT-G-CTCCCAAAATGATTCTCAAGTTTTTTACGGG 2645
Query 3000 AATGATTCACTCT-ATGTGCTTTTTAGGCTTCATCAAATGTTGTACGAGAGAATACAATC 3058
|||||||| || | ||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 2646 AATGATTC-CTATTATGTGCTATTTAGGCTTCATCAAATGTTGTACGAGAGAATACAAAC 2704
Query 3059 AGCAAAGATACATTCAGAGAGGAAATGGAAAGCTCCAGATAGCACATCTACTGATTCTTA 3118
|||||||| ||||||||| | ||| ||||| |||||||||| |||| || ||||||||||
Sbjct 2705 AGCAAAGAAACATTCAGAAAAGAAGTGGAAGGCTCCAGATAACACAACTCCTGATTCTTA 2764
Query 3119 TACCAGGTTCATGGAAGCCCTTTACAATTTACTTGATGGCTCTAGCGACAATACAAAGTT 3178
| ||||||||||||| || || || ||||||||||| || |||| ||||||||||||||
Sbjct 2765 TCCCAGGTTCATGGATGCACTCTATAATTTACTTGACGGTTCTATTGACAATACAAAGTT 2824
Query 3179 TGAAGATGAATGTCGAGCTATTATCGGAGCACAATCATATGTTCTCTTCACATTGGACAA 3238
||||||||| || ||||||||| | |||||||| || |||||||| ||||||||||||||
Sbjct 2825 TGAAGATGAGTGCCGAGCTATTTTTGGAGCACAGTCGTATGTTCTTTTCACATTGGACAA 2884
Query 3239 GCTAGTTCAAAAGTTTGTTAAGCATCTTCACGCAGTCGCAGCTGATGAGACAGACACCAA 3298
||||||||| ||||||||||||||||| || || || ||| ||||||| |||||||||||
Sbjct 2885 GCTAGTTCAGAAGTTTGTTAAGCATCTCCATGCGGTTGCATCTGATGAAACAGACACCAA 2944
Query 3299 GCTTCTGCAGCTATATGCATACGAGAACTACAGAAAACCAGGAAGATTCTTTGATATAGT 3358
||||||||| ||| |||| || |||||||||||||||||||||| |||||||||| | ||
Sbjct 2945 GCTTCTGCAACTACATGCGTATGAGAACTACAGAAAACCAGGAAAATTCTTTGATCTTGT 3004
Query 3359 GTACCATGAGAATGC-TCGAGCCCTTCTCCATGAT-CAGAACATATACAGGATT-GAATA 3415
||| ||||||||||| | | ||||| |||||||| || ||||||||| |||| || ||
Sbjct 3005 GTATCATGAGAATGCAT-GTGCCCTCCTCCATGAGGCA-AACATATACCGGATCAGA-TA 3061
Query 3416 TTCATCTGCCCAAACCCGTCTCG-GAATTCAACTTATGAACAGCTGGAATGATCAGCCTG 3474
|||||| || |||| |||||| || |||| |||||||||||| |||| |||||||||
Sbjct 3062 TTCATCAGCAGAAACACGTCTCTCGA-TTCAGCTTATGAACAGCGGGAACAATCAGCCTG 3120
Query 3475 AAGTTACAGCTGTAAC-AGTGGAACCAGGTTTTGCTA-ATTATCTGCAGAATGAC-TTTC 3531
|||| | | |||| | | |||| ||||||||||| | ||||||| || || || ||||
Sbjct 3121 AAGTAATGGGTGTAGCGA-TGGAGCCAGGTTTTGC-AGATTATCTACAAAA-GAAATTTC 3177
Query 3532 TTTCGTTTGTCAGTGATGAAGAGAAACCCGGACTATTTCTGAAAAGGAACAAGGCA-AAA 3590
| | |||| |||||||||||| | |||||| |||||||||||||||||| | |||
Sbjct 3178 TGAAATCCGTCAATGATGAAGAGAATCACGGACTGTTTCTGAAAAGGAACAAGA-AGAAA 3236
Query 3591 TTAAGTGGTCCGGGTGA-A-GAATCTCTAGGGATGTCACGT-GCCTTGGAAGGATTGAAC 3647
|| | || | | | | ||||||| |||||| | ||| || ||||||||||| |
Sbjct 3237 TTCA-----CCAGCTTAGATGAATCTCGGGGGATGCC-CGTTGCGATGGAAGGATTGCAT 3290
Query 3648 ATTATCAATGAGGTTGAATGTAAGATAGCTTGCAGTTCTTTCAA-GGTCAAGTATGAACC 3706
|||||||| ||| | |||||||| || ||||||||||||| ||| ||| ||||||| | |
Sbjct 3291 ATTATCAACGAGATGGAATGTAATATGGCTTGCAGTTCTT-CAAAGGTGAAGTATGTAGC 3349
Query 3707 ACACACAGCAGATCTTTTATATAGAAG-AAAGCAG 3740
| | ||| ||||| |||| ||||| || ||| |||
Sbjct 3350 AAATACATCAGATGTTTTGTATAGGAGCAAA-CAG 3383
Score = 361 bits (195), Expect = 3e-98
Identities = 371/455 (82%), Gaps = 16/455 (4%)
Strand=Plus/Plus
Query 491 AACAGTTGATGCTTTGACATATCTTAAAGCTGTGAAGGATATGTTTCAAGACAACAAAGA 550
||| || ||||| | || ||||| |||||||| ||||| || ||||||||||| |||||
Sbjct 200 AACCGTCGATGCCCTAACGTATCTCAAAGCTGTTAAGGACATTTTTCAAGACAATAAAGA 259
Query 551 GAAATATGAGACTTTCCTTGGAG-TCATGAAGGACTTCAAAGCTCAGAGAGTTGACACTA 609
|||||||||| |||||||| ||| |||||||||| || |||||||| | | | ||||||
Sbjct 260 GAAATATGAGTCTTTCCTT-GAGCTCATGAAGGAGTTTAAAGCTCATACAATCGACACTG 318
Query 610 ATGGCGTCATAGCAAGAGTAAAAGAT-TTGTTCAAGGGCTATGACGACTTACTTTTGGGT 668
|||| ||||| | |||| | |||| | ||||||||||| ||| | ||| ||||||| |||
Sbjct 319 ATGGTGTCATTGAAAGAATTAAAG-TATTGTTCAAGGGTTATAAGGACCTACTTTTAGGT 377
Query 669 TTTAATACCTTCTTACCTAAGGGGTACAAAATTACCCTTCAGCCTGAGGATGAGAAACCT 728
|||||||| ||||| || || || || | ||| ||||||| ||| ||||| ||||| |||
Sbjct 378 TTTAATACTTTCTTGCCCAAAGGCTATAGAATAACCCTTCTGCCGGAGGAAGAGAAGCCT 437
Query 729 AAGAAG-CC-AGTGGATTTCCAAGTA-GCTATCGAATTT-GTCAACAGGATTAAGGCGCG 784
||| | || ||||||||| ||| | ||||||| ||| |||| || ||||||| || |
Sbjct 438 AAG--GTCCGGGTGGATTTCAAAG-ACGCTATCG-GTTTCGTCACCAAGATTAAGACGAG 493
Query 785 ATTTGGAGGTGATGACCGTGCATATAAAAAATTTCTAGACATCTTGAACATGTATAGAAA 844
|| |||| |||||| | ||| ||||||| |||||||||||||||||||||||||||||
Sbjct 494 GTTCGGAGATGATGAACATGCGTATAAAAGGTTTCTAGACATCTTGAACATGTATAGAAA 553
Query 845 GGAAACCAAGTCCATCAAC-GAGGTCTATC-AAGAGGTTACTCTGTTGTTCCAGGACCAT 902
||||| ||||||||| | |||||||| | ||||||||||| |||| ||| ||| |||
Sbjct 554 GGAAAGAAAGTCCATCT-CTGAGGTCTA-CGAAGAGGTTACTATGTTATTCAAGGGTCAT 611
Query 903 GAAGATCTGCTCGGGGAGTTTGTTCATTTCTTACC 937
|||||||||||| |||||| ||| ||||||||||
Sbjct 612 GAAGATCTGCTCATGGAGTTCGTTAATTTCTTACC 646
> Ahg334309 jgi|Araly1|334309|fgenesh1_pg.C_scaffold_1000874
Length=639
Score = 466 bits (252), Expect = 6e-130
Identities = 392/458 (86%), Gaps = 15/458 (3%)
Strand=Plus/Plus
Query 3029 TCATCAAATGTTGTACGAGAGAATAC-AATCAGCAAAGATACATTCAGAGAGGAAATGGA 3087
|||||||||||||||||||||||||| || || |||||| ||||||||| | ||||||||
Sbjct 164 TCATCAAATGTTGTACGAGAGAATACAAAACAACAAAGAAACATTCAGAAAAGAAATGGA 223
Query 3088 AAGCTCCAGATAGCAC-ATCTAC-TGATTCTTATACCAGGTTCATGGAAGCCCTTTACAA 3145
| |||||||||| ||| | || | |||||||||| ||||||||||||| || || || ||
Sbjct 224 AGGCTCCAGATAACACGA-CT-CTTGATTCTTATCCCAGGTTCATGGATGCACTCTATAA 281
Query 3146 TTTACTTGATGGCTCTAGCGACAATACAAAGTTTGAAGATGAATGTCGAGCTATTATCGG 3205
||||||||| || |||| |||||||| |||||||||||||| || ||||||||| | ||
Sbjct 282 TTTACTTGACGGTTCTATTGACAATACCAAGTTTGAAGATGAGTGCCGAGCTATTTTTGG 341
Query 3206 AGCACAATCATATGTTCTCTTCACATTGGACAAGCTAGTTCAAAAGTTTGTTAAGCATCT 3265
|||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 342 AGCACAGTCATATGTTCTTTTCACATTGGACAAGCTAGTTCAGAAGTTTGTTAAGCATCT 401
Query 3266 TCACGCAGTCGCAGCTGATGAGACAGACACCAAGCTTCTGCAGCTATATGCATACGAGAA 3325
|| || || ||| ||||||| |||||||||||||||||||| ||| |||| || |||||
Sbjct 402 CCATGCGGTTGCATCTGATGAAACAGACACCAAGCTTCTGCAACTACATGCGTATGAGAA 461
Query 3326 CTACAGAAAACCAGGAAGATTCTTTGATATAGTGTACCATGAGAATGC-TCGAGCCCTTC 3384
|||||||||||| |||| |||||||||||||||||| ||||||||||| | | ||| | |
Sbjct 462 CTACAGAAAACCGGGAAAATTCTTTGATATAGTGTATCATGAGAATGCAT-GTGCCATCC 520
Query 3385 TCCATGAT-CAGAACATATAC-AGGATT-GAATATTCATCTGCCCAAACCCGTCTCG-GA 3440
||||||| || ||||||||| || || || |||||||| || |||| |||||| ||
Sbjct 521 TCCATGAGGCA-AACATATACCAG-ATCAGA-TATTCATCAGCGGAAACACGTCTCTCGA 577
Query 3441 ATTCAACTTATGAACAGCTGGAATGATCAGCCTGAAGT 3478
|||| |||||||||||| |||| |||||||||||||
Sbjct 578 -TTCAGCTTATGAACAGCGGGAACAATCAGCCTGAAGT 614
> Ahg949339 jgi|Araly1|949339|scaffold_801226.1
Length=325
Score = 150 bits (81), Expect = 7e-35
Identities = 96/103 (93%), Gaps = 2/103 (2%)
Strand=Plus/Plus
Query 3314 TGCATACGAGAACTACAGAAAACCAGGAAGATTCTTTGATATAGTGTACCATGAGAATGC 3373
|||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 202 TGCATACGAGAACTACAGAAAATCAGGAAGATACTTTGATATAGTGTACCATGAGAATGC 261
Query 3374 TCGAGCCCTTCTCCATGATCAGAACATATAC-AGGATTGAATA 3415
|||| |||||| |||| |||||||||||||| || ||||||||
Sbjct 262 TCGATCCCTTCCCCATTATCAGAACATATACCAG-ATTGAATA 303
> Ahg952456 jgi|Araly1|952456|scaffold_7400002.1
Length=325
Score = 145 bits (78), Expect = 3e-33
Identities = 95/103 (92%), Gaps = 2/103 (2%)
Strand=Plus/Plus
Query 3314 TGCATACGAGAACTACAGAAAACCAGGAAGATTCTTTGATATAGTGTACCATGAGAATGC 3373
|||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 202 TGCATACGAGAACTACAGAAAATCAGGAAGATACTTTGATATAGTGTACCATGAGAATGC 261
Query 3374 TCGAGCCCTTCTCCATGATCAGAACATATAC-AGGATTGAATA 3415
|||| || ||| |||| |||||||||||||| || ||||||||
Sbjct 262 TCGATCCGTTCCCCATTATCAGAACATATACCAG-ATTGAATA 303
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 158776194556
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5