BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G59900.1
Length=1468
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475318 jgi|Araly1|475318|fgenesh2_kg.2__448__AT1G59900.1 2222 0.0
> Ahg475318 jgi|Araly1|475318|fgenesh2_kg.2__448__AT1G59900.1
Length=1434
Score = 2222 bits (1203), Expect = 0.0
Identities = 1333/1394 (96%), Gaps = 15/1394 (1%)
Strand=Plus/Plus
Query 73 AATGGCTCTATCACGCCTCTCATCACGATCCAACATCATCACTCGTCCCTTCTCCGCCGC 132
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 48 AATGGCTCTATCACGCCTCACATCACGATCCAACATCATCACTCGTCCCTTCTCCGCCGC 107
Query 133 CTTCAGCCGATTAATCTCAACGGACACAACTCCGATCACAATCGAGACTTCGCTTCCTTT 192
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 108 CTTCAGCCGATTGCTCTCAACGGACACAACTCCGATCACAATCGAGACTTCGCTTCCTTT 167
Query 193 CACAGCTCACTTATGTGATCCACCGTCACGCTCCGTCGAATCATCGAGTCAAGAGCTTCT 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 168 CACAGCTCACTTATGTGATCCACCGTCACGCTCCGTCGAATCATCGAGTCAAGAGCTTCT 227
Query 253 CGATTTCTTCAGAACCATGGCGTTGATGCGACGTATGGAAATCGCAGCCGATTCGCTTTA 312
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 228 CGATTTCTTCCGAACCATGGCGTTGATGCGACGTATGGAAATCGCAGCCGATTCGCTTTA 287
Query 313 CAAAGCGAAGCTAATCCGAGGGTTTTGTCATCTCTACGACGGCCAAGAAGCTGTAGCTAT 372
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 288 CAAAGCGAAGCTAATCCGAGGGTTTTGCCATCTCTACGACGGCCAAGAAGCTGTAGCTAT 347
Query 373 AGGCATGGAAGCTGCGATTACAAAGAAAGACGCGATTATTACTGCTTATCGTGATCACTG 432
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 348 AGGCATGGAAGCTGCGATTACAAAGAAAGACGCGATCATTACTGCTTATCGAGATCACTG 407
Query 433 TATTTTCTTAGGTCGTGGTGGTTCGCTTCATGAGGTTTTCTCAGAGCTTATGGGAAGACA 492
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 408 TATTTTCTTAGGTCGTGGTGGTTCGCTTCATGAGATTTTCTCAGAGCTTATGGGAAGACA 467
Query 493 AGCTGGTTGTTCTAAAGGGAAAGGTGGATCTATGCACTTCTATAAGAAGGAATCGTCGTT 552
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 468 AGCTGGTTGTTCTAAAGGGAAAGGTGGATCTATGCATTTCTATAAGAAGGAATCGTCGTT 527
Query 553 TTACGGTGGTCATGGGATTGTTGGTGCTCAGGTTCCATTAGGTTGTGGTATTGCTTTTGC 612
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 528 TTATGGTGGTCATGGGATTGTTGGTGCTCAGGTTCCATTAGGTTGTGGTATTGCTTTTGC 587
Query 613 TCAGAAGTATAACAAGGAAGAGGCTGTCACATTTGCTTTGTATGGTGATGGTGCTGCGAA 672
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 588 TCAGAAGTATAATAAGGAAGAGGCTGTGACATTTGCTTTGTATGGTGATGGTGCTGCGAA 647
Query 673 TCAGGGACAGTTGTTTGAAGCTTTGAATATTTCTGCTCTTTGGGATTTGCCTGCAATTTT 732
||| |||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||
Sbjct 648 TCAAGGACAGTTGTTTGAAGCTTTGAATATATCTGCTCTTTGGGATTTACCTGCTATTTT 707
Query 733 GGTCTGCGAGAACAATCACTATGGAATGGGAACTGCTGAATGGAGAGCCGCTAAGAGTCC 792
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 708 GGTCTGCGAGAACAATCACTATGGAATGGGAACTGCTGAATGGAGAGCCTCTAAGAGTTC 767
Query 793 ATCTTACTACAAGCGTGGTGATTATGTTCCTGGACTCAAGGTAGATGGTATGGATGCATT 852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 768 ATCTTACTACAAGCGTGGTGATTATGTTCCTGGACTCAAGGTAGATGGTATGGATGCATT 827
Query 853 TGCTGTCAAACAAGCTTGCAAATTTGCTAAGCAGCATGCGTTGGAGAAGGGGCCAATAAT 912
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 828 TGCTGTCAAACAAGCTTGCAAATTTGCTAAGCAGCATGCGTTGGAGAAGGGACCAATAAT 887
Query 913 TCTTGAGATGGACACATACAGGTACCACGGTCACTCCATGTCTGATCCTGGGAGCACATA 972
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 888 TCTTGAGATGGACACATACAGGTACCACGGTCACTCCATGTCTGATCCTGGGAGCACATA 947
Query 973 CCGTACCCGAGATGAGATATCTGGTGTGAGGCAGGAACGGGATCCAATTGAGAGAATAAA 1032
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 948 CCGTACACGAGATGAGATATCTGGTGTGAGGCAGGAACGGGATCCAATTGAGAGAATAAA 1007
Query 1033 GAAGCTGGTACTATCTCATGACCTAGCAACCGAGAAAGAGCTTAAGGATATGGAGAAGGA 1092
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1008 AAAGTTGGTACTATCTCATGACCTAGCAACCGAGAAAGAGCTTAAGGATATGGAGAAGGA 1067
Query 1093 AATTAGAAAAGAAGTAGATGACGCCATTGCCAAAGCTAAGGATTGCCCAATGCCAGAGCC 1152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1068 AATTAGAAAAGAAGTAGATGACGCCATTGCCAAAGCTAAGGATTGCCCAATGCCAGAGCC 1127
Query 1153 TTCTGAGCTCTTTACCAATGTGTATGTGAAGGGATTTGGCACCGAGTCATTTGGACCTGA 1212
||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 1128 TTCTGAGCTTTTTACCAATGTGTATGTGAAAGGATATGGCACCGAGTCATTTGGACCTGA 1187
Query 1213 CAGAAAAGAAGTCAAAGCTTCCCTTCCATGATCATGGAGCTCTTGTTCGTTAAACTGCCA 1272
||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||
Sbjct 1188 CAGAAAAGAAGTCAAAGCTTCGCTTCCATGATCATGAAGCGATTGTTCGTTAAACTGCCA 1247
Query 1273 CGTGTCATGAGAAAGTTGGCTGAT-AGAGAAATCTATGAATATGAATAAAGATCTGATTG 1331
|||||||||||| ||| ||||||| | || || ||||||||| || ||||| ||||
Sbjct 1248 CGTGTCATGAGACAGTCGGCTGATGATAGGAAGCTATGAATA--AA----GATCTTATTG 1301
Query 1332 TATACTCT--CTCTCTccc-c-c-cc-cTTCTGAACTTTAATCTCTCTGTATCTTTGTTT 1385
|||||| | ||||||| | | || ||||||| |||||||||||||||||||| |||
Sbjct 1302 TATACTATTACTCTCTCTGTCTCTCCTCTTCTGAGTTTTAATCTCTCTGTATCTTTCTTT 1361
Query 1386 ACAAACATAAGGAGAAACAATGTTATTCTTGTGAAGCTTTAGT-AGTCTCGTGTTTAATA 1444
| | ||||||||||||||| ||||||| |||||||||||| || ||||||||||||||||
Sbjct 1362 ATATACATAAGGAGAAACA-TGTTATTATTGTGAAGCTTTTGTCAGTCTCGTGTTTAATA 1420
Query 1445 TTCAAGCAATCGAG 1458
|||||||||| |||
Sbjct 1421 TTCAAGCAATTGAG 1434
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54926133290
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5