BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G59910.1
Length=3006
Score E
Sequences producing significant alignments: (Bits) Value
Ahg907482 jgi|Araly1|907482|Al_scaffold_0002_563 3795 0.0
> Ahg907482 jgi|Araly1|907482|Al_scaffold_0002_563
Length=2766
Score = 3795 bits (2055), Expect = 0.0
Identities = 2577/2818 (91%), Gaps = 80/2818 (3%)
Strand=Plus/Plus
Query 1 ATGTCGTTTCTTTTCCGTAAGAACGGTAGTAGTTCACGGAGGAAGATCAAAGAAAAACTC 60
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCTTTTCTTTTCCGTAAGAACGGAAGTAGTTCACGGAGGAAGATCAAAGAAAAACTT 60
Query 61 CGTGGTCGTCACTCAGATCGAGGTGGGAAGAGAGAAGAAGATGAGAGA---TACGGCGGC 117
|||||||| ||||||||||| ||||| || |||||||||||||||||| |||||||||
Sbjct 61 CGTGGTCGGCACTCAGATCGCGGTGGAAAAAGAGAAGAAGATGAGAGAGTCTACGGCGGC 120
Query 118 TCCGGCTCCGA-T--TTACCTCCACCACCGTCTCCTTGGGGATTTCTCTTCCCGGAGGAT 174
||||||||||| | ||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct 121 TCCGGCTCCGATTCGTTACCACCACCACCGTCTCCTTGGGGTTTTCTCTTCCCGGATGAT 180
Query 175 TTTGTAAGAATCGACGGGAATCTCAAAGCTGTTATTGTAGATGATGAAGGATTAGATGTG 234
||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTTGTTCGAATTGACGGAAATCTCAAAGCTGTTATTGTAGATGATGAAGGATTAGATGTG 240
Query 235 ATTTACTGGAAGAAGCTTCTAGAGTTGGAAAATAGCGGGAAAATTAGAAAAAACCCTAAA 294
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GTTTACTGGAAAAAGCTTCTAGAGTTGGAAAATAGCGGGAAAATTAGAAAAAACCCTAAA 300
Query 295 CCTAGAAGAAGAGGAGACAAATCCGGTGACGGATTTAGAAGAACTGGAGCAGATCAAGAC 354
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 301 CCTAGAAGAAGAGGAGATAAATCCGGTGACGGATTTAGAAGAACTGGAGTAGATCAAGAC 360
Query 355 GATAACGATGATGGTGATGATGAAGTAGGAGATGAATCTATCGAAGAGGCGTTTTCGTTT 414
| || || || |||| | | |||||||||||||||||| |||||||||||
Sbjct 361 G---AC---GA---CGACGATG-A-T----GATGAATCTATCGAAGAGACGTTTTCGTTT 405
Query 415 CATGTGAAAAAATCTCAATCTGCGTCATCGTCAGGTGGTGAAATTAGAGATCAGAGTAAT 474
||| |||||||||||||||| | | | ||||||||||||||||||||||||||||||
Sbjct 406 CATACGAAAAAATCTCAATCT-C--C-T--TCAGGTGGTGAAATTAGAGATCAGAGTAAT 459
Query 475 AATGGTGGTGGTggaggaggaggaggaggaggaggaggaAGATACTATActtcttcttct 534
||||||||||| || ||||| ||||| ||||||||||||||||| |||||||||||||||
Sbjct 460 AATGGTGGTGGAGGTGGAGGTGGAGGTGGAGGAGGAGGAAGATATTATACTTCTTCTTCT 519
Query 535 gcttctccgtcacgaccttcttcttcttctgcatctgctgcttcGCCGTCGCGAACTTCC 594
| ||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 520 GGTTCACCGTCACGACCTTCTTCTTCTTCTACATCTGCTGCTTCGCCGTCACGAACTTCT 579
Query 595 TATGCTACAAGTGCCGGTAGTGATTAtggtggtggtggtggtggAAAACAATCTCAATCC 654
||||||||||| || |||||||||||||||||| || | | |||||| ||||||||||
Sbjct 580 TATGCTACAAGCGCTGGTAGTGATTATGGTGGT-GT--T-G-GGAAAA-AATCTCAATCT 633
Query 655 AAATTTCAAGCTCCTGGCGGCGGTTCATTTCCCTCTTCTCCGTCGCAGATCCATAGTGGT 714
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 634 AAATTTCAAGCTCCTGGCGGCGGTTCATTTCCCTCTTCGCCGTCGCAGATCCATAGTGGT 693
Query 715 GGTGGCCGTTCTCCGCCACTTCCGCTTCCTCCGGGTCAATTCACGGCGGG-AAATGCGTC 773
|| ||||||||||||||||||||| |||||||||| |||||||||| ||| |||||||||
Sbjct 694 GGCGGCCGTTCTCCGCCACTTCCGTTTCCTCCGGGGCAATTCACGG-GGGTAAATGCGTC 752
Query 774 ATT-TCCTTCATCAACACAGCCTCCTCCGGGTCAATACATGGCGGGAAATGCGTCATT-T 831
||| | || |||| |||| || ||||||||||||||||| ||||| |||||||||||| |
Sbjct 753 ATTGT-CTACATCGACACCGCTTCCTCCGGGTCAATACACGGCGGTAAATGCGTCATTGT 811
Query 832 CCTTCATCAACACCGCCTCCTCCGGGTCAATACATGGCGGGAA-ATGCGCCATTTTCTTC 890
|| |||| ||||||| |||||||||||||| || ||||| || | ||| |||| ||| |
Sbjct 812 -CTGCATCGACACCGCTTCCTCCGGGTCAATTCACGGCGGTAACA-GCGTCATTGTCTGC 869
Query 891 ATCGACACCGCTTCCTCCAGGTCAATACCCGGCGGTGAATGCG-CAATTGTCTACATCCG 949
|||||||||||||||||| ||||||| | ||||||| |||||| | ||||||||||| ||
Sbjct 870 ATCGACACCGCTTCCTCCGGGTCAATTCACGGCGGTAAATGCGTC-ATTGTCTACAT-CG 927
Query 950 -CACCGTCTGTTCCA-CTTCCTCCGGGTCAATACACT-GCGGTGAATGCGCCATTTTC-G 1005
||||||||||| || ||||||||||||||||||| | ||||| ||||||||||| || |
Sbjct 928 ACACCGTCTGTT-CAGCTTCCTCCGGGTCAATACA-TGGCGGTAAATGCGCCATTGTCTG 985
Query 1006 ACATCCACACAGCCTGTAT-CGCTTCCTCCGGGTCAATACATGCCCGGT-AATGCGGCAT 1063
|||| |||| | |||| | ||||||||||||| ||||||||| |||| |||||| |||
Sbjct 986 -CATCGACACCGTCTGT-TCCGCTTCCTCCGGGCCAATACATG-GCGGTAAATGCGCCAT 1042
Query 1064 TGTCAGCATCGACACCGCTTACTCCGGGTCAATTCACCACGGCAAATGCTCCACCAG-CA 1122
|||| |||||| | | | ||||||||||||||||| |||||||||| ||| | ||
Sbjct 1043 TGTCTGCATCG--A---C--A--CCGGGTCAATTCACCACAGCAAATGCTCTACC-GCCA 1092
Query 1123 CCGCCTGGTCCAGCAAACCAAACTTcaccaccaccaccacctccaccatctgctgcggct 1182
||||||| |||||||||||||||||||||||||||||| ||||| | ||||||| |||
Sbjct 1093 CCGCCTGTTCCAGCAAACCAAACTTCACCACCACCACCGCCTCCGGCGTCTGCTGGGGCA 1152
Query 1183 ccacctcccccaccaccacctaaaaaaggacctgctgcaccaccaccacctcctccacca 1242
|||||||| || ||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1153 CCACCTCCACCTCCACCGCCTAAAAAAGGACCTGCTGCGCCACCACCACCTCCTCCACCG 1212
Query 1243 GGTAAGAAAGGAGCTGGACCGCCACCACCTCCTCCAATGTCGAAGAAGGGCCCACCTAAA 1302
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1213 GGTAAGAAAGGAGCTGGACCGCCACCACCGCCTCCAATGTCGAAGAAGGGCCCACCTAAA 1272
Query 1303 CCCCCTGGTAATCCAAAAGGACCAACAAAGTCAGGTGAGACTTCATTGGCCGTAGGCAAA 1362
|| ||||||||| | ||||| || ||||||||||||||||||||||||| |||||||||
Sbjct 1273 CCGCCTGGTAATACTAAAGGTCCGACAAAGTCAGGTGAGACTTCATTGGATGTAGGCAAA 1332
Query 1363 ACTGAGGATCCGACGCAGCCGAAGCTCAAGCCTTTACATTGGGATAAGATGAACCCTGAT 1422
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1333 GCTGAGGATCCGACGCAGCCAAAGCTCAAGCCGCTACATTGGGATAAGATGAACCCTGAT 1392
Query 1423 GCAAGCCGTTCTATGGTGTGGCACAAGATTGATGGTGGCTCCTTCAACTTTGATGGTGAT 1482
|| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1393 GCGAGTCGTTCTATGGTGTGGCACCGGATTGATGGTGGCTCCTTCAACTTTGATGGTGAT 1452
Query 1483 CTCATGGAGGCTTTGTTTGGATACGTTGCTCGAAAACCAAGTGAATCAAACAGTGTACCG 1542
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1453 CTCATGGAGGCTCTGTTTGGATACGTTGCTCGAAAACCAAGTGAATCAAACAATGTACCG 1512
Query 1543 CAGAATCAGACA-GTCTCAAACAGTGTACCGCATAATCAGACTTATATCCTTGATCCTCG 1601
||||||| || | |||||||||||||| ||||| ||||||||||||||||| ||||||||
Sbjct 1513 CAGAATCCGA-ATGTCTCAAACAGTGTTCCGCAGAATCAGACTTATATCCTCGATCCTCG 1571
Query 1602 GAAATCTCAGAACAAAGCAATTGTGCTTAAATCTTTGGGGATGACTAAAGAAGAGATCAT 1661
|||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1572 GAAATCCCAGAACAAAGCAATTGTGCTTAAATCTTTGGGGATGACTAAGGAGGAGATCAT 1631
Query 1662 TGACTTGTTAACAGAAGGCCATGATGCTGAGTCTGATACCCTTGAGAAGCTTGCAGGAAT 1721
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1632 TGACTTGTTAACAGAAGGTCATGATGCTGAGTCTGATACCCTTGAGAAGCTTGCAGGAAT 1691
Query 1722 AGCTCCAACGCCAGAAGAACAGACAGAAATCATAGATTTCGATGGTGAACCGATGACATT 1781
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1692 AGCTCCAACGCCAGAAGAACAGACAGAAATCATAGATTTCGATGGTGAACCGACGACATT 1751
Query 1782 GGCTTATGCAGATTCTCTACTGTTTCACATCTTAAAAGCAGTTCCTTCCGCGTTTAACCG 1841
|||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 1752 GGCTTATGCAGACTCTCTACTGTTTCACATCTTACGAGCAGTTCCTTCTGCGTTTAACCG 1811
Query 1842 GTTCAACGTTATGCTTTTCAAGATTAACTACGGCTCTGAGGTTGCTCAACAAAAGGGATC 1901
||||||||| ||||| |||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1812 GTTCAACGTCATGCTCTTCAAGATTAACTACGGCTCTGAGGTGGTTCAACAAAAGGGATC 1871
Query 1902 TTTACTAACACTTGAATCCGCGTGCAACGAGCTCCGTGCTCGTGGGCTGTTCATGAAGCT 1961
||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1872 TTTACAAACACTTGAATCCGCGTGCAACGAGCTCCGTGCTCGCGGGCTATTCATGAAGCT 1931
Query 1962 GCTAGAAGCAATCTTGAAAGCAGGTAATAGAATGAACGCTGGAACCGCGAGGGGAAATGC 2021
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1932 GCTAGAAGCAATCTTGAAAGCAGGTAATAGAATGAACGCTGGAACCGCGAGGGGAAATGC 1991
Query 2022 TCAGGCTTTTAATCTGACAGCTTTAAGAAAATTGTCTGATGTGAAGAGTGTTGATGCGAA 2081
||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 1992 TCAGGCTTTCAATCTGACAGCTCTAAGAAAATTGTCTGATGTGAAGAGTGTTGATGGGAA 2051
Query 2082 AACTACCTTACTTCATTTTGTTGTTGAAGAAGTTGTAAGGTCTGAAGGAAAGCGAGCTGC 2141
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2052 AACTACTTTACTTCATTTTGTTGTTGAAGAAGTTGTAAGGTCTGAGGGAAAGCGAGCTGC 2111
Query 2142 AATGAATAAGAACATGATGTCTAGTGATAATGGTAGTGGCGAGAATGCAGATATGTCTAG 2201
|||||||||||||||||||||| |||||||| ||||| |||||||||| || | |||||
Sbjct 2112 GATGAATAAGAACATGATGTCTAATGATAATGCTAGTGCCGAGAATGCAAATGTATCTAG 2171
Query 2202 AGAAGAACAAGAGATTGAATTTATTAAG-ATGGGTTTACCCATTATAGGTGGCTTAAGTT 2260
|||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||
Sbjct 2172 AGAAGAACAAGAGATTGAATTTATTAAGCA-GGGTTTACCCATTATAGGTGGCCTAAGTT 2230
Query 2261 CAGAGTTCACTAATGTGAAGAAAGCGGCTGGAATTGATTATGATTCGTTTGTAGCTACGA 2320
||||||||||||||||||||||||| |||||||| ||||| || ||||||||||| ||||
Sbjct 2231 CAGAGTTCACTAATGTGAAGAAAGCAGCTGGAATCGATTACGACTCGTTTGTAGCCACGA 2290
Query 2321 CCTTGGCTTTAGGCACCCGAGTGAAAGAAACAAAACGTCTTTTAGACCAAAGCAAAGGGA 2380
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 2291 CCTTGGCTTTAGGCACCCGAGTGAAAGAAACGAAACGCCTTTTAGACCAAAGCAAAGGGA 2350
Query 2381 AGGAAGATGGGTGTTTAACAAAGCTGAGATCTTTCTTTGAATCTGCGGAGGAAGAACTGA 2440
|||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2351 AGGAAGATGGTTGTTTGACAAAGCTGAGATCTTTCTTTGAATCTGCAGAGGAAGAACTGA 2410
Query 2441 AAGTTATTACGGAAGAACAGCTTAGGATAATGGAGTTAGTGAAGAAAACTACAAACTATT 2500
|||||||||| || |||||||| |||||||||||||||||||||||||| ||||| ||||
Sbjct 2411 AAGTTATTACCGAGGAACAGCTCAGGATAATGGAGTTAGTGAAGAAAACCACAAATTATT 2470
Query 2501 ACCAAGCTGGAGCATTGAAAGAGAGGAACCTGTTTCAACTGTTTGTTATAATCCGTGATT 2560
||||||||||||| || |||||||||||||| ||||| || |||||||||||||||||||
Sbjct 2471 ACCAAGCTGGAGCCTTAAAAGAGAGGAACCTATTTCAGCTTTTTGTTATAATCCGTGATT 2530
Query 2561 TCTTAGGGATGGTTGATAATGCATGTAGTGAGATCGCAAGGAATCAACGGAAACAACAGC 2620
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 2531 TCTTAGGGATGGTTGATAATGCCTGTAGTGAGATCGCAAGGAATCAACGGAAACAACAAC 2590
Query 2621 AACAAC---GACCTGCAACAACAGTAGCAG--G-AGCATCAAGTTCACCAGCAGAAACTC 2674
|||||| |||| |||||||||||||||| | ||||||||||||| ||||||||||||
Sbjct 2591 AACAACAACGACCCGCAACAACAGTAGCAGCTGGAGCATCAAGTTCAACAGCAGAAACTC 2650
Query 2675 CGAGCGTTGCTGCTGCACCGCAAAGGAACGCAGTTAGATTTCCAATTCTGCCTCCAAATT 2734
|||||||||| ||||||||||||||||| || ||||||||||||||||| ||||||||||
Sbjct 2651 CGAGCGTTGCGGCTGCACCGCAAAGGAATGCGGTTAGATTTCCAATTCTACCTCCAAATT 2710
Query 2735 TCATGTCAGAGAGTTCAAGGTACAG--CAGTTCAAGTGACTCAGACTCAGAATCTTGA 2790
||||||||||||||||||||||||| || | ||||||||||||||||||||||||||
Sbjct 2711 TCATGTCAGAGAGTTCAAGGTACAGTTCA-T-CAAGTGACTCAGACTCAGAATCTTGA 2766
Score = 167 bits (90), Expect = 5e-40
Identities = 195/241 (81%), Gaps = 26/241 (11%)
Strand=Plus/Plus
Query 736 CCGCTTCCTCCGGGTCAATTCACGGCGGGAA-ATGCGTCATT-TCCTTCATCAACACAGC 793
|||||||||||||||||||||||||||| || | |||||||| || | |||| |||| ||
Sbjct 823 CCGCTTCCTCCGGGTCAATTCACGGCGGTAACA-GCGTCATTGTC-TGCATCGACACCGC 880
Query 794 CTCCTCCGGGTCAATACATGGCGGGAAATGCGTCATT-TCCTTCATCAACACCG-C---- 847
|||||||||||||| || ||||| |||||||||||| || | |||| |||||| |
Sbjct 881 TTCCTCCGGGTCAATTCACGGCGGTAAATGCGTCATTGTC-TACATCGACACCGTCTGTT 939
Query 848 C---T-CCTCCGGGTCAATACATGGCGGGAAATGCGCCATTTTCTTCATCGACACCG-CT 902
| | |||||||||||||||||||||| |||||||||||| ||| ||||||||||| ||
Sbjct 940 CAGCTTCCTCCGGGTCAATACATGGCGGTAAATGCGCCATTGTCTGCATCGACACCGTCT 999
Query 903 -T-CC--T-CCA--GGTC-AATACCCGGCGGTGAATGCGCAATTGTCTACATCCG-CACC 953
| || | || || | ||||| |||||| ||||||| ||||||| |||| | ||||
Sbjct 1000 GTTCCGCTTCCTCCGGGCCAATACATGGCGGTAAATGCGCCATTGTCTGCATC-GACACC 1058
Query 954 G 954
|
Sbjct 1059 G 1059
Score = 134 bits (72), Expect = 5e-30
Identities = 151/185 (82%), Gaps = 22/185 (12%)
Strand=Plus/Plus
Query 736 CCGCTTCCTCCGGGTCAATTCACGGCGGGAAATGCGTCATT-TCCTTCATCAACACAG-C 793
|||||||||||||||||||||||||||| |||||||||||| || | |||| |||| | |
Sbjct 877 CCGCTTCCTCCGGGTCAATTCACGGCGGTAAATGCGTCATTGTC-TACATCGACACCGTC 935
Query 794 ----C---T-CCTCCGGGTCAATACATGGCGGGAAATGCGTCATT-TCCTTCATCAACAC 844
| | |||||||||||||||||||||| ||||||| |||| || | |||| ||||
Sbjct 936 TGTTCAGCTTCCTCCGGGTCAATACATGGCGGTAAATGCGCCATTGTC-TGCATCGACAC 994
Query 845 CG-C----C---T-CCTCCGGGTCAATACATGGCGGGAAATGCGCCATTTTCTTCATCGA 895
|| | | | |||||||| ||||||||||||| |||||||||||| ||| ||||||
Sbjct 995 CGTCTGTTCCGCTTCCTCCGGGCCAATACATGGCGGTAAATGCGCCATTGTCTGCATCGA 1054
Query 896 CACCG 900
|||||
Sbjct 1055 CACCG 1059
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 113508930100
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5