BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G59930.1 Length=399 Score E Sequences producing significant alignments: (Bits) Value Ahg925805 jgi|Araly1|925805|scaffold_201366.1 484 1e-136 Ahg926346 jgi|Araly1|926346|scaffold_201907.1 283 6e-76 Ahg908617 jgi|Araly1|908617|Al_scaffold_0002_1698 156 1e-37 > Ahg925805 jgi|Araly1|925805|scaffold_201366.1 Length=661 Score = 484 bits (262), Expect = 1e-136 Identities = 358/404 (89%), Gaps = 7/404 (2%) Strand=Plus/Plus Query 1 ATGGATCAAGAGGCTTTTTTGCGTGAGAGGATTGAAAAAGCACAAGCGCAATTGCAAAAG 60 |||||||||||||||||||||||| |||||||||||| | |||||||||||||||||| Sbjct 234 ATGGATCAAGAGGCTTTTTTGCGTCAGAGGATTGAAAGTGAACAAGCGCAATTGCAAAAA 293 Query 61 CTGCGTGATGAAAATCGAGTTTTGAGGGCTCGACAAATTATGTGGGGTTGTATCGAAGGA 120 |||||||||| || |||| ||||| |||||| ||||||||||||||||| ||| |||| Sbjct 294 TTGCGTGATGAGAACCGAGATTTGAAGGCTCGGGAAATTATGTGGGGTTGTCTCGGAGGA 353 Query 121 ACTATTGATGTGTGTCAACTCGGTGAAAAGGATCTTCAAGATTTGAGTTCTGTTATTGAT 180 | |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 354 AATATTGATGTGCATCAACTCGGTGAAAAAGATCTTCAAGATTTGAGTTCTGTTATTGAT 413 Query 181 GACTATCTCGATAGCCTTA-AAAGCAGGATTGAGTACCTTAAGAAGAATGGTGAGCCTTC 239 |||||||| || || ||| || |||| ||||| ||||||| |||||||||||| |||| Sbjct 414 AACTATCTCAATTGCGTTACTAA-CAGGTTTGAGAACCTTAAAAAGAATGGTGAGTCTTC 472 Query 240 TTCTTCTTTACCTCCTCGTGTTCTTCAAGATCTTAATGTTGAAGAGGATGGGGACATTCC 299 ||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||| Sbjct 473 TTCTTCTTTACCTCCTCTTGTTGTTCCAGATCTTAATGTTGAAGAGGATGGGGACATTCC 532 Query 300 TTCCATGGATGGCAGCCATC-ACCAGTCTGAAACTAATCGTCTCGCTACCATCACTACCA 358 |||||| ||||||||| | | |||| || |||||||||||||||||| || ||||||| Sbjct 533 TTCCATTGATGGCAGC-ACCCACCAATCCGAAACTAATCGTCTCGCTGTAATAACTACCA 591 Query 359 CCG---CTGATGCTTGTGCGCCTAACATCACCAATAATCCTTAG 399 ||| ||||||||||||| |||||||||||||||||||||||| Sbjct 592 CCGTTGCTGATGCTTGTGCTCCTAACATCACCAATAATCCTTAG 635 > Ahg926346 jgi|Araly1|926346|scaffold_201907.1 Length=526 Score = 283 bits (153), Expect = 6e-76 Identities = 218/250 (87%), Gaps = 2/250 (1%) Strand=Plus/Plus Query 1 ATGGATCAAGAGGCTTTTTTGCGTGAGAGGATTGAAAAAGCACAAGCGCAATTGCAAAAG 60 |||||||||||||| || |||||||||||||| ||||||| |||| | ||||| |||| Sbjct 246 ATGGATCAAGAGGCCTTATTGCGTGAGAGGATCGAAAAAGAACAAATGGAATTGAAAAAA 305 Query 61 CTGCGTGATGAAAATCGAGTTTTGAGGGCTCGACAAATTATGTGGGGTTG-TATCGAAGG 119 |||| ||||| ||||||| ||||| ||||| |||||||||||||| || | ||| ||| Sbjct 306 TTGCGCGATGAGAATCGAGATTTGAAAGCTCGGCAAATTATGTGGGG-TGTTCTCGGAGG 364 Query 120 AACTATTGATGTGTGTCAACTCGGTGAAAAGGATCTTCAAGATTTGAGTTCTGTTATTGA 179 || |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 365 AAATATTGATGTGCATCAACTCGGTGAAAAAGATCTTCAAGATTTGAGTTCTGTTATTGA 424 Query 180 TGACTATCTCGATAGCCTTAAAAGCAGGATTGAGTACCTTAAGAAGAATGGTGAGCCTTC 239 | |||||||| ||||| ||| |||||||||||| ||||||| |||||||||||| |||| Sbjct 425 TAACTATCTCAATAGCGTTACTAGCAGGATTGAGGACCTTAAAAAGAATGGTGAGTCTTC 484 Query 240 TTCTTCTTTA 249 |||||||||| Sbjct 485 TTCTTCTTTA 494 > Ahg908617 jgi|Araly1|908617|Al_scaffold_0002_1698 Length=339 Score = 156 bits (84), Expect = 1e-37 Identities = 145/174 (83%), Gaps = 6/174 (3%) Strand=Plus/Plus Query 100 ATGTGGGGTTGTATCGAA-GGAACTATTGATGTGTGTCAACTCGGTGAAAAGGATCTTCA 158 |||||||||||| | || || | ||||||||| || |||||| | |||||||||||| Sbjct 1 ATGTGGGGTTGTCTTAAAGGGGA-GATTGATGTGCATCGACTCGGCGTAAAGGATCTTCA 59 Query 159 AGATTTGAGTTCTGTTATTGATGACTATCTCGATAGC-CTTAAAAGCAGGATTGAGTA-C 216 |||||||||||| |||||||| |||||| | ||| | ||| ||||||||| || | | Sbjct 60 AGATTTGAGTTCGGTTATTGAAAACTATCCCAATA-CTGTTACTAGCAGGATTAAG-AGC 117 Query 217 CTTAAGAAGAATGGTGAGCCTTCTTCTTCTTTACCTCCTCGTGTTCTTCAAGAT 270 ||||||||||||||||||||||||||||||||||| |||| |||| ||| |||| Sbjct 118 CTTAAGAAGAATGGTGAGCCTTCTTCTTCTTTACCCCCTCTTGTTGTTCCAGAT 171 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 14308345875 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5