BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G59930.1
Length=399
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925805 jgi|Araly1|925805|scaffold_201366.1 484 1e-136
Ahg926346 jgi|Araly1|926346|scaffold_201907.1 283 6e-76
Ahg908617 jgi|Araly1|908617|Al_scaffold_0002_1698 156 1e-37
> Ahg925805 jgi|Araly1|925805|scaffold_201366.1
Length=661
Score = 484 bits (262), Expect = 1e-136
Identities = 358/404 (89%), Gaps = 7/404 (2%)
Strand=Plus/Plus
Query 1 ATGGATCAAGAGGCTTTTTTGCGTGAGAGGATTGAAAAAGCACAAGCGCAATTGCAAAAG 60
|||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||
Sbjct 234 ATGGATCAAGAGGCTTTTTTGCGTCAGAGGATTGAAAGTGAACAAGCGCAATTGCAAAAA 293
Query 61 CTGCGTGATGAAAATCGAGTTTTGAGGGCTCGACAAATTATGTGGGGTTGTATCGAAGGA 120
|||||||||| || |||| ||||| |||||| ||||||||||||||||| ||| ||||
Sbjct 294 TTGCGTGATGAGAACCGAGATTTGAAGGCTCGGGAAATTATGTGGGGTTGTCTCGGAGGA 353
Query 121 ACTATTGATGTGTGTCAACTCGGTGAAAAGGATCTTCAAGATTTGAGTTCTGTTATTGAT 180
| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 354 AATATTGATGTGCATCAACTCGGTGAAAAAGATCTTCAAGATTTGAGTTCTGTTATTGAT 413
Query 181 GACTATCTCGATAGCCTTA-AAAGCAGGATTGAGTACCTTAAGAAGAATGGTGAGCCTTC 239
|||||||| || || ||| || |||| ||||| ||||||| |||||||||||| ||||
Sbjct 414 AACTATCTCAATTGCGTTACTAA-CAGGTTTGAGAACCTTAAAAAGAATGGTGAGTCTTC 472
Query 240 TTCTTCTTTACCTCCTCGTGTTCTTCAAGATCTTAATGTTGAAGAGGATGGGGACATTCC 299
||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||
Sbjct 473 TTCTTCTTTACCTCCTCTTGTTGTTCCAGATCTTAATGTTGAAGAGGATGGGGACATTCC 532
Query 300 TTCCATGGATGGCAGCCATC-ACCAGTCTGAAACTAATCGTCTCGCTACCATCACTACCA 358
|||||| ||||||||| | | |||| || |||||||||||||||||| || |||||||
Sbjct 533 TTCCATTGATGGCAGC-ACCCACCAATCCGAAACTAATCGTCTCGCTGTAATAACTACCA 591
Query 359 CCG---CTGATGCTTGTGCGCCTAACATCACCAATAATCCTTAG 399
||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 592 CCGTTGCTGATGCTTGTGCTCCTAACATCACCAATAATCCTTAG 635
> Ahg926346 jgi|Araly1|926346|scaffold_201907.1
Length=526
Score = 283 bits (153), Expect = 6e-76
Identities = 218/250 (87%), Gaps = 2/250 (1%)
Strand=Plus/Plus
Query 1 ATGGATCAAGAGGCTTTTTTGCGTGAGAGGATTGAAAAAGCACAAGCGCAATTGCAAAAG 60
|||||||||||||| || |||||||||||||| ||||||| |||| | ||||| ||||
Sbjct 246 ATGGATCAAGAGGCCTTATTGCGTGAGAGGATCGAAAAAGAACAAATGGAATTGAAAAAA 305
Query 61 CTGCGTGATGAAAATCGAGTTTTGAGGGCTCGACAAATTATGTGGGGTTG-TATCGAAGG 119
|||| ||||| ||||||| ||||| ||||| |||||||||||||| || | ||| |||
Sbjct 306 TTGCGCGATGAGAATCGAGATTTGAAAGCTCGGCAAATTATGTGGGG-TGTTCTCGGAGG 364
Query 120 AACTATTGATGTGTGTCAACTCGGTGAAAAGGATCTTCAAGATTTGAGTTCTGTTATTGA 179
|| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 365 AAATATTGATGTGCATCAACTCGGTGAAAAAGATCTTCAAGATTTGAGTTCTGTTATTGA 424
Query 180 TGACTATCTCGATAGCCTTAAAAGCAGGATTGAGTACCTTAAGAAGAATGGTGAGCCTTC 239
| |||||||| ||||| ||| |||||||||||| ||||||| |||||||||||| ||||
Sbjct 425 TAACTATCTCAATAGCGTTACTAGCAGGATTGAGGACCTTAAAAAGAATGGTGAGTCTTC 484
Query 240 TTCTTCTTTA 249
||||||||||
Sbjct 485 TTCTTCTTTA 494
> Ahg908617 jgi|Araly1|908617|Al_scaffold_0002_1698
Length=339
Score = 156 bits (84), Expect = 1e-37
Identities = 145/174 (83%), Gaps = 6/174 (3%)
Strand=Plus/Plus
Query 100 ATGTGGGGTTGTATCGAA-GGAACTATTGATGTGTGTCAACTCGGTGAAAAGGATCTTCA 158
|||||||||||| | || || | ||||||||| || |||||| | ||||||||||||
Sbjct 1 ATGTGGGGTTGTCTTAAAGGGGA-GATTGATGTGCATCGACTCGGCGTAAAGGATCTTCA 59
Query 159 AGATTTGAGTTCTGTTATTGATGACTATCTCGATAGC-CTTAAAAGCAGGATTGAGTA-C 216
|||||||||||| |||||||| |||||| | ||| | ||| ||||||||| || | |
Sbjct 60 AGATTTGAGTTCGGTTATTGAAAACTATCCCAATA-CTGTTACTAGCAGGATTAAG-AGC 117
Query 217 CTTAAGAAGAATGGTGAGCCTTCTTCTTCTTTACCTCCTCGTGTTCTTCAAGAT 270
||||||||||||||||||||||||||||||||||| |||| |||| ||| ||||
Sbjct 118 CTTAAGAAGAATGGTGAGCCTTCTTCTTCTTTACCCCCTCTTGTTGTTCCAGAT 171
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14308345875
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5