BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G59940.1
Length=1051
Score E
Sequences producing significant alignments: (Bits) Value
Ahg907481 jgi|Araly1|907481|Al_scaffold_0002_562 957 0.0
Ahg919829 jgi|Araly1|919829|scaffold_101110.1 436 1e-121
> Ahg907481 jgi|Araly1|907481|Al_scaffold_0002_562
Length=690
Score = 957 bits (518), Expect = 0.0
Identities = 624/676 (92%), Gaps = 3/676 (0%)
Strand=Plus/Plus
Query 79 ATGGCCAAAGACGGTGGCGTTTCTTGTCTACGAAGGTCGGAGATGATCGGTATAGGAATC 138
||||| |||||||||||| |||||||||||||||| || |||||||||||||||||||||
Sbjct 1 ATGGCTAAAGACGGTGGCTTTTCTTGTCTACGAAGATCAGAGATGATCGGTATAGGAATC 60
Query 139 GGAGAACTTGAATCTCCGCCGCTAGATTCTGATCAAGTCCACGTTCTCGCCGTTGATGAC 198
||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 61 GGAGAACTTGAATCTCCACCGTTAGATTCTGATCAGGTCCACGTTCTCGCCGTTGATGAC 120
Query 199 AGCCTAGTTGATCGAATAGTCATCGAAAGATTGCTTCGAATCACATCCTGCAAAGTCACG 258
||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGCCTCCTTGATAGAATCGTCATCGAAAGATTGCTTCGAATCACATCCTGCAAAGTCACG 180
Query 259 GCGGTTGATAGCGGATGGCGTGCTCTCGAATTCTTAGGATTAGACGACGACAAAGCCGCC 318
||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||
Sbjct 181 GCGGTTGATAGCGGATGGCGTGCTCTCGAATTCTTAGGATTGGACGACAAGAAAGCCGCC 240
Query 319 GTCGAATTCGATAGATTGAAGGTGGATTTGATCATCACTGATTACTGTATGCCTGGAATG 378
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 241 GTCGAATTCGATAGATTGAAGGTTGATTTGATCATCACTGATTATTGTATGCCTGGAATG 300
Query 379 ACTGGATACGAGCTTCTGAAAAAGATTAAGGAATCGACAAGTTTTAAGGAAGTTCCTGTT 438
||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 301 ACTGGATACGAACTTTTGAAGAAGATTAAGGAATCGACAAGTTTTAAGGAAGTTCCTGTT 360
Query 439 GTAATTATGTCGTCGGAGAATGTAATGACTCGTATCGACAGATGTCTTGAAGAAGGTGCG 498
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 361 GTAATTATGTCGTCGGAGAATGTAATCACTCGTATCGACAGATGTCTCGAAGAAGGTGCG 420
Query 499 GAGGATTTTTTACTAAAACCGGTGAAACTCGCCGACGTGAAACGTCTGAGGAGTTACTTG 558
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 421 GAGGATTTTTTACTAAAACCGGTGAAGCTCGCCGACGTGAAACGTCTGAGGAATTACTTG 480
Query 559 ACGAGAGACGTTAAAGTCGCCGCCGAAGGAAACAAACGGAAGCTGACCACTCCACCGCCG 618
|| | |||||||||||| |||||||| ||||||||||||||||| || ||||| || |||
Sbjct 481 ACTAAAGACGTTAAAGTTGCCGCCGACGGAAACAAACGGAAGCTCACTACTCCTCCTCCG 540
Query 619 CCGCCTCCGCTCTCAGCCACATCCTCGATGGAATCTTCGGACTCTACGGTGGAATCGCCT 678
||||| ||||||| ||||||||||||||||||||| |||||| |||||||||||| ||
Sbjct 541 CCGCC---GCTCTCATCCACATCCTCGATGGAATCTTTGGACTCAACGGTGGAATCGTCT 597
Query 679 CTGTCTATGGTTGACGATGAAGATTCGTTGACAATGTCGCCGGAGTCTGCAACTTCGCTT 738
|| ||| |||||| || || |||||||||| |||||||||||| ||| |||| ||||
Sbjct 598 CTATCTTTGGTTGTTGACGATGATTCGTTGATAATGTCGCCGGAATCTTCAACGTCGCCG 657
Query 739 GTGGATTCGCCGATGA 754
||| | ||||||||||
Sbjct 658 GTGAACTCGCCGATGA 673
> Ahg919829 jgi|Araly1|919829|scaffold_101110.1
Length=821
Score = 436 bits (236), Expect = 1e-121
Identities = 439/534 (82%), Gaps = 25/534 (5%)
Strand=Plus/Plus
Query 77 CTATGGCCAAAGACGGTGGCGTTTCTTGTCTACGAAGGTCGGAGATGATCGGTATAGGAA 136
||||||||| ||||||||| ||||||||| |||| |||||||||||||| | | | |
Sbjct 20 CTATGGCCAGAGACGGTGGTGTTTCTTGTTTACGGAGGTCGGAGATGAT--G-A-ACG-- 73
Query 137 TCGGA-GAACTTGAATCTCCGCCGCTAGATTCT-GATCAAGTCCACGTTC-TCGCCGTTG 193
||||| ||| |||||||| ||||| | |||| | ||| |||| || | || | ||||| |
Sbjct 74 TCGGAGGAA-TTGAATCTGCGCCGTTGGATT-TAGATGAAGTTCATG-TCTTGGCCGTCG 130
Query 194 ATGACAGCCTAGTTGATCGAATAGTCATCGAAAGATTGCTTCGAATCACATCCTGCAAAG 253
| |||||||| |||||||| || || ||||| ||||||||||| || || ||||||||||
Sbjct 131 ACGACAGCCTCGTTGATCGGATTGTTATCGAGAGATTGCTTCGTATTACTTCCTGCAAAG 190
Query 254 TCACGGCGGTTGATAGCGGATGGCGTGCTCTCGAA-TTCTTAGGATTAGACGACGACAAA 312
| |||||||| ||||| |||||||||||||| ||| ||| |||| ||||| | || |||
Sbjct 191 TTACGGCGGTAGATAGTGGATGGCGTGCTCTGGAATTTC-TAGGGTTAGATAATGAGAAA 249
Query 313 GCCGCCGTC-GAATTCGATAGATTGAAGGTGGATTTGATCATCACTGATTACTGTATGCC 371
|| | | | ||||||||||| ||||| || |||||||||||||||||||||||||||||
Sbjct 250 GCTTCTG-CTGAATTCGATAGTTTGAAAGTTGATTTGATCATCACTGATTACTGTATGCC 308
Query 372 TGGAATGACTGGATACGAGCTTCTGAAAAAGATTAAGGAATCGAC-AAGTTTTA-AGGAA 429
|||||||||||| || |||||||| || ||||||||||||||| | || ||| | || ||
Sbjct 309 TGGAATGACTGGTTATGAGCTTCTCAAGAAGATTAAGGAATCGTCTAA-TTTCAGAG-AA 366
Query 430 GTTCCTGTTGTAATTATGTCGTCGGAGAATGTAATGACTC-GTATCGACAGATGTCTTGA 488
||||| |||||||| ||||| |||||||| ||| |||| | | ||||| ||||| |||||
Sbjct 367 GTTCCGGTTGTAATCATGTCATCGGAGAACGTATTGAC-CAGAATCGATAGATGCCTTGA 425
Query 489 AGAAGGTGCGGAGGATTTTTTACTAAAACCGGTGAAACTCGCCGACGTGAAACGTCTGAG 548
|||||||| | ||||| ||| | ||||||||||||||||||||||| |||||||||||
Sbjct 426 GGAAGGTGCTCAAGATTTCTTATTGAAACCGGTGAAACTCGCCGACGTTAAACGTCTGAG 485
Query 549 GAGTTACTTGACGAGAGACGTTAAAGTCGCCGCCGAAGGAAACAAACGGAAGCT 602
| | |||| || | |||||||||| | || || | |||||||||||||||
Sbjct 486 AAATCACTTAACTAAAGACGTTAAACTTTCCAACG--G-AAACAAACGGAAGCT 536
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39114112842
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5