BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G59950.1
Length=963
Score E
Sequences producing significant alignments: (Bits) Value
Ahg907480 jgi|Araly1|907480|Al_scaffold_0002_561 1155 0.0
Ahg475314 jgi|Araly1|475314|fgenesh2_kg.2__444__AT1G59960.1 935 0.0
> Ahg907480 jgi|Araly1|907480|Al_scaffold_0002_561
Length=921
Score = 1155 bits (625), Expect = 0.0
Identities = 848/951 (89%), Gaps = 34/951 (4%)
Strand=Plus/Plus
Query 15 GTTCCCTATCGGATCCGTTCATCACTTGATGCCGGTTCTAGCTCTTGGAACTGCTGCGTC 74
|||| | |||||||| | |||||||||||||||||||||||||| ||||| ||||||||
Sbjct 3 GTTCTCAATCGGATCTGCCCATCACTTGATGCCGGTTCTAGCTCTAGGAACGGCTGCGTC 62
Query 75 TCCTCCACCCGAACCAATAGTGTTGA-AACGGACGGTGTTGGAAGCCATCAAGCTCGGTT 133
|||||| || ||||| |||||||||| || ||||||||||| ||||||||||||||||
Sbjct 63 TCCTCCGCCGGAACCGATAGTGTTGAGAA-AAACGGTGTTGGAGGCCATCAAGCTCGGTT 121
Query 134 ATCGTCACTTCGACACCTCTCCTAGGTACCAGACGGAGGAACCGCTTGGTGAAGCTTTGG 193
|||||||||||||||| ||||| ||||||||||| ||||| ||||| || |||||| |||
Sbjct 122 ATCGTCACTTCGACACGTCTCCGAGGTACCAGACAGAGGAGCCGCTCGGCGAAGCTCTGG 181
Query 194 CGGAGGCGGTTTCTCTCGGGTTAATCCAATCTCGATCAGAACTCTTCGTCACTTCTAAGC 253
|||| || |||||||| || ||| ||||||||||||| |||||||| |||||||||||||
Sbjct 182 CGGAAGCAGTTTCTCTAGGCTTAGTCCAATCTCGATCGGAACTCTTTGTCACTTCTAAGC 241
Query 254 TATGGTGTGCCGATGCTCATGGTGGCCTTGTTGTACCGGCGATCCAACGGAGTTTGGAAA 313
|||| |||| |||| ||||| ||||||||||||||||||||| |||| |||||||||||
Sbjct 242 TATGTTGTGTTGATGTTCATGTTGGCCTTGTTGTACCGGCGATTCAACAGAGTTTGGAAA 301
Query 314 CTCTTAAATTGGACTATCTCGATCTCTACCTAATCCACTGGCCGGTTAGCTCGAAACCTG 373
|||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 302 CTCTTAAACTGGACTATCTCGATCTCTACCTAATTCATTGGCCGGTTAGCTCGAAACCTG 361
Query 374 GTAAATACAAGTTCCCTATAGAAGAAGATGACTTTTTGCCAATGGATTATGAAACAGTTT 433
||||||||||||| ||||| ||||||||||| ||||||||||||||||||||| |||| |
Sbjct 362 GTAAATACAAGTTTCCTATTGAAGAAGATGATTTTTTGCCAATGGATTATGAAGCAGTAT 421
Query 434 GGTCTGAGATGGAAGAGTGTCAGAGACTCGGAGTTGCAAAGTGTATAGGAGTAAGCAACT 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 GGTCTGAGATGGAAGAGTGTCAGAGACTCGGAGTTGCAAAGTGTATAGGAGTAAGCAACT 481
Query 494 TCTCATGCAAGAAACTCCAACACATCCTTTCAATAGCAAAAATCCCACCTAGTGTCAATC 553
|||| |||||||| |||||||| ||||| || | || ||||| | || | | |
Sbjct 482 TCTCGTGCAAGAAGCTCCAACATATCCTCTC--T-GCCAAAAT--C-CC-A----C---C 527
Query 554 AAGTGGAGATGAGTCCAGTATGGCAACAGAGAAAACTGAGGG-AGTTATGTAAGTCGAAA 612
| || | || || || | | | ||||||||||||| | || |||||||| |||
Sbjct 528 ---T--AG-T--GT-CA--AT--C-A-A-AGAAAACTGAGGGAACTT-TGTAAGTCTAAA 570
Query 613 GGCATTGTTGTGACAGCTTATTCGGTGTTGGGATCGAGAGGAGCGTTTTGGGGAACTCAC 672
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 571 GGCATTGTTGTGACAGCTTATTCGGTGTTGGGATCTAGAGGAGCTTTTTGGGGAACTCAC 630
Query 673 AAAATCATGGAGTCTGATGTTCTCAAAGAAATTGCTGAGGCAAAGGGAAAAACAGTAGCT 732
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 631 AAAATCATGGAGTCTGATGTTCTCAAAGAAATTGCTGTGGCAAAGGGAAAAACAGTAGCA 690
Query 733 CAGGTGAGTATGAGATGGGCTTACGAGGAAGGAGTGAGCATGGTGGTGAAGAGCTTTAGG 792
||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 691 CAGATGAGTATGAGATGGGCTTATGAACAAGGAGTGAGCATGGTGGTGAAGAGCTTTACC 750
Query 793 AAAGACAGATTGGAAGAGAATCTGAAGATATTTGATTGGTCTTTGACAGAGGAGGAGAAA 852
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 751 AAAGAGAGGCCGGAAGAGAATCTGAAGATATTTGATTGGTCTTTGACAGAGGAGGAGAAA 810
Query 853 CAGAGAATCTCGACGGAGATTTCTCAGAGCAGGATCGTTGACGGAGAGGTTTACATCTCG 912
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 811 CAGAGAATTTCGACGGAGATTTCTCAGAGCAGGATCGTTGACGGAGAGGTTTATATCTCA 870
Query 913 GAGAAAGGTCCTATAAAATCTGTCACCGAGATGTGGGACGGTGAGATCTGA 963
||||| ||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 871 GAGAACGGTTCTATAAAATCTGTCACCGAGATGTGGGACGGTGAGATATGA 921
> Ahg475314 jgi|Araly1|475314|fgenesh2_kg.2__444__AT1G59960.1
Length=1084
Score = 935 bits (506), Expect = 0.0
Identities = 810/955 (85%), Gaps = 27/955 (3%)
Strand=Plus/Plus
Query 27 ATCCGTTCATCACTTGATGCCGGTTCTAGCTCTTGGAACTGCTGCGTCTCCTCCACCCGA 86
||||| |||||||| |||||||||||| | | ||||||| || || ||||| ||| ||
Sbjct 92 ATCCGGTCATCACTCGATGCCGGTTCTTGGTTTTGGAACAGCCGCTTCTCCGATACCGGA 151
Query 87 ACCAATAG-TGTTGAAACG-GACGGTGTTGGAAGCCATCAAGCTCGGTTATCGTCACTTC 144
||||| | || ||||| | ||||||| |||| ||||||||||| |||||||| || |||
Sbjct 152 ACCAA-CGATGCTGAAA-GAGACGGTGATGGAGGCCATCAAGCTTGGTTATCGCCATTTC 209
Query 145 GACACCTCTCCTAGGTACCAGACGGAGGAACCGCTTGGTGAAGCTTTGGCGGAGGCGGTT 204
||||| || || |||||||| |||||||| ||| | || |||||||||||||||||||||
Sbjct 210 GACACGTCGCCGAGGTACCAAACGGAGGAGCCGATCGGCGAAGCTTTGGCGGAGGCGGTT 269
Query 205 TCTCTCGGGTTAATCCAATCTCGATCAGAACTCTTCGTCACTTCTAAGCTATGGTGTGCC 264
||||| || ||| ||| ||||||||| ||| |||| |||||| | ||||| ||||||||
Sbjct 270 TCTCTTGGCTTAGTCCGATCTCGATCTGAATTCTTTGTCACTACCAAGCTTTGGTGTGCT 329
Query 265 GATGCTCATGGTGGCCTTGTTGTACCGGCGATCCAACGGAGTTTG-GAAACTCTTAAATT 323
|||||||||| ||| || || |||||||||||| ||||||||||| |||| |||||| |
Sbjct 330 GATGCTCATGCTGGTCTCGTCGTACCGGCGATCAAACGGAGTTTGAAAAAC-CTTAAACT 388
Query 324 GGACTATCTCGATCTCTACCTAATCCACTGGCCGGTTAGCTCGAAACCTGGTAAATACAA 383
||||||||| ||||| || ||||| || ||||||||||||||||||||||||||||||||
Sbjct 389 GGACTATCTTGATCTTTATCTAATTCATTGGCCGGTTAGCTCGAAACCTGGTAAATACAA 448
Query 384 GTT-CCCTATAGAAGAAGATGACTTTTTGCCAATGGATTAT-GAAACAGTTTGGTCTGAG 441
||| ||| || || |||||||| |||||||||||||||| | ||| ||| ||||||||
Sbjct 449 GTTTCCC-ATTGATGAAGATGATTTTTTGCCAATGGATT-TCGAAGTAGTGTGGTCTGAA 506
Query 442 ATGGAAGAGTGTCAGAGACTCGGAG-TTGCAAAGTGTATAGGAGTAAGCAACTTCTCATG 500
||||| ||||| || |||||||| | |||||||||||||||||||||||||||| || ||
Sbjct 507 ATGGAGGAGTGCCAAAGACTCGG-GCTTGCAAAGTGTATAGGAGTAAGCAACTTTTCTTG 565
Query 501 CAAGAAACTCCAACACATCCTTTCAATAGCAAAAATCCCACCTAGTGTCAATCAAGT--- 557
||||| || ||||||||||| || || || |||||||| ||||| |||||||| ||
Sbjct 566 TAAGAAGCTTCAACACATCCTCTCTATCGCGAAAATCCCGCCTAGCGTCAATCAGGTAAA 625
Query 558 ----G--GAGATGAGTCCAGTATGGCAACAGAGAAAACTGAGGGAG-TTATGTAAGT-CG 609
| |||||||||||| |||||||||| |||||||| |||||| || |||| || ||
Sbjct 626 AACTGTTGAGATGAGTCCAATATGGCAACAAAGAAAACTAAGGGAGCTT-TGTA-GTTCG 683
Query 610 AAAGGCATTGTTGTGACAGCTTATTCGGTGTTGGGATCGAGAGGAGCGTTTTGGGGAACT 669
|| | ||||||||| ||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct 684 AACGACATTGTTGTCACAGCTTATTCGGTGTTGGGATCTAGAGGGGCTTTTTGGGGAACT 743
Query 670 CACAAAATCATGGAGTCTGATGTTCTCAAAGAAATTGCTGAGGCAAAGGGAAAAACAGTA 729
| |||||| ||||||||||| |||||||||||||| || || ||||||| |||||| ||
Sbjct 744 CCCAAAATTATGGAGTCTGACGTTCTCAAAGAAATAGCAGAAGCAAAGGAAAAAACTGTG 803
Query 730 GCTCAGGTGAGTATGAGATGGGCTTACGAGGAAGGAGTGAGCATGGTGGTGAAGAGCTTT 789
|| |||||||| |||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 804 GCCCAGGTGAGCATGAGATGGGCTTATGAACAAGGAGTGAGCATGGTGGTGAAGAGCTTT 863
Query 790 AGGAAAGACAGATTGGAAGAGAATCTGAAGATATTTGATTGGTCTTTGACAGAGGAGGAG 849
| ||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 864 ACCAAAGAGAGATTGGAAGAGAATCTGAAAATATTTGATTGGTCTTTGACAGAAGAGGAG 923
Query 850 AAACAGAGAATCTCGACGGAGATTTCTCAGAGCAGGATCGTTGACGGAGAGGTTTACATC 909
| ||||||||||||||| |||||| | ||| ||||| | | | ||| |||||||| |||
Sbjct 924 ACACAGAGAATCTCGACAGAGATTCCACAGTTCAGGAACCTCGGCGGCGAGGTTTATATC 983
Query 910 TCGGAGAAAGGTCCTATAAAATCTGTCA-CCGAGATGTGGGACGGTGAGATCTGA 963
|| |||||||||| |||||||| || | |||| ||||||||||| |||||||||
Sbjct 984 TCCAAGAAAGGTCCCATAAAATCCGT-AGCCGAAATGTGGGACGGCGAGATCTGA 1037
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35759296146
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5