BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G59960.1
Length=1179
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475314 jgi|Araly1|475314|fgenesh2_kg.2__444__AT1G59960.1 1472 0.0
Ahg907480 jgi|Araly1|907480|Al_scaffold_0002_561 782 0.0
> Ahg475314 jgi|Araly1|475314|fgenesh2_kg.2__444__AT1G59960.1
Length=1084
Score = 1472 bits (797), Expect = 0.0
Identities = 960/1038 (92%), Gaps = 13/1038 (1%)
Strand=Plus/Plus
Query 65 GACTTCTCTTTAACCAATGTCTTTAACCACAGTCCCTACGCTCGCCATCAGATCCGGACC 124
||||||| || ||||||||||||| || ||||||| |||||||||||||||||||||||
Sbjct 32 GACTTCTGTTGAACCAATGTCTTTCACTTCAGTCCCCACGCTCGCCATCAGATCCGGACC 91
Query 125 ATCCGGTCATCACTCGATGCCGGTTCTTGGTTTTGGAACCGCCGCTTCTCCGCTACCGGA 184
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 92 ATCCGGTCATCACTCGATGCCGGTTCTTGGTTTTGGAACAGCCGCTTCTCCGATACCGGA 151
Query 185 ACCAACGATGCTGAAAGAGACGGTGATTGAGGCTATTAAGCTTGGTTATCGCCATTTCGA 244
||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||
Sbjct 152 ACCAACGATGCTGAAAGAGACGGTGATGGAGGCCATCAAGCTTGGTTATCGCCATTTCGA 211
Query 245 CACCTCTCCAAGGTACCAAACGGAGGAGCCGATCGGCGAAGCTTTAGCGGAGGCGGTTTC 304
||| || || ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 212 CACGTCGCCGAGGTACCAAACGGAGGAGCCGATCGGCGAAGCTTTGGCGGAGGCGGTTTC 271
Query 305 ACTCGGCTTAGTTCGATCTCGATCTGAATTCTTTGTCACTACCAAACTTTGGTGTGCTGA 364
|| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 272 TCTTGGCTTAGTCCGATCTCGATCTGAATTCTTTGTCACTACCAAGCTTTGGTGTGCTGA 331
Query 365 TGCTCATGGTGGTCTCGTCGTACCGGCGATCAAACGGAGTTTGAAAAACCTTAAACTGGA 424
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 332 TGCTCATGCTGGTCTCGTCGTACCGGCGATCAAACGGAGTTTGAAAAACCTTAAACTGGA 391
Query 425 CTATCTTGATCTTTATATAATTCATTGGCCGGTTAGCTCGAAACCTGGTAAATACAAGTT 484
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 392 CTATCTTGATCTTTATCTAATTCATTGGCCGGTTAGCTCGAAACCTGGTAAATACAAGTT 451
Query 485 TCCTATTGATGAAGATGATTTTATGCCAATGGATTTCGAAGTAGTGTGGTCTGAAATGGA 544
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 452 TCCCATTGATGAAGATGATTTTTTGCCAATGGATTTCGAAGTAGTGTGGTCTGAAATGGA 511
Query 545 GGAGTGTCAGAGACTTGGGCTCGCAAAATGCATAGGAGTAAGCAATTTTTCATGTAAGAA 604
|||||| || ||||| ||||| ||||| || |||||||||||||| ||||| ||||||||
Sbjct 512 GGAGTGCCAAAGACTCGGGCTTGCAAAGTGTATAGGAGTAAGCAACTTTTCTTGTAAGAA 571
Query 605 GCTTCAACACATACTCTCTATCGCGACAATCCCGCCTAGCGTCAATCA---A------GT 655
|||||||||||| ||||||||||||| ||||||||||||||||||||| | ||
Sbjct 572 GCTTCAACACATCCTCTCTATCGCGAAAATCCCGCCTAGCGTCAATCAGGTAAAAACTGT 631
Query 656 TGAGATGAGTCCAATATGGCAACAAAGAAAGCTAAGGGAGCTTTGTAGATCGAACGACAT 715
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 632 TGAGATGAGTCCAATATGGCAACAAAGAAAACTAAGGGAGCTTTGTAGTTCGAACGACAT 691
Query 716 TGTTGTCACAGCGTACTCGGTGTTGGGATCTAGAGGAGCTTTTTGGGGAACTCCCAAAAT 775
|||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 692 TGTTGTCACAGCTTATTCGGTGTTGGGATCTAGAGGGGCTTTTTGGGGAACTCCCAAAAT 751
Query 776 TATGGAATCTGATGTTCTCAAAGAAATAGCAGAAGCAAAGGAAAAAACAGTGGCCCAGGT 835
|||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 752 TATGGAGTCTGACGTTCTCAAAGAAATAGCAGAAGCAAAGGAAAAAACTGTGGCCCAGGT 811
Query 836 GAGTATGAGATGGGCTTATGAACAAGGAGTGAGCATGGTAGTGAAGAGCTTTACCAAAGA 895
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 812 GAGCATGAGATGGGCTTATGAACAAGGAGTGAGCATGGTGGTGAAGAGCTTTACCAAAGA 871
Query 896 GAGATTAGAAGAGAATCT-AAAGATATTTGATTGGTCTTTGACAGAGGATGAGACACAGA 954
|||||| ||||||||||| ||| ||||||||||||||||||||||| || ||||||||||
Sbjct 872 GAGATTGGAAGAGAATCTGAAA-ATATTTGATTGGTCTTTGACAGAAGAGGAGACACAGA 930
Query 955 GAATTTCAACTGAGATTCCTCAGTTCAGAAACGTCCACGGAGAGGTTTATACCTCTAAGA 1014
|||| || || |||||||| |||||||| ||| || ||| |||||||||| ||| ||||
Sbjct 931 GAATCTCGACAGAGATTCCACAGTTCAGGAACCTCGGCGGCGAGGTTTATATCTCCAAGA 990
Query 1015 AAGGTCCCATCAAATCTGTCGCCGAGATGTGGGACGGGGAGATCTGATCACTT-TGTGTG 1073
|||||||||| ||||| || ||||| ||||||||||| ||||||||||||||| | |||
Sbjct 991 AAGGTCCCATAAAATCCGTAGCCGAAATGTGGGACGGCGAGATCTGATCACTTCTC-GTG 1049
Query 1074 AAAATAGCCTATTGAAAA 1091
|||||||| || ||||||
Sbjct 1050 AAAATAGCATAGTGAAAA 1067
> Ahg907480 jgi|Araly1|907480|Al_scaffold_0002_561
Length=921
Score = 782 bits (423), Expect = 0.0
Identities = 776/940 (83%), Gaps = 50/940 (5%)
Strand=Plus/Plus
Query 132 CATCACTCGATGCCGGTTCTTGGTTTTGGAACCGCCGCTTCTCCGCTACCGGAACC-A-A 189
||||||| |||||||||||| | | | ||||| || || ||||| | |||||||| | |
Sbjct 22 CATCACTTGATGCCGGTTCTAGCTCTAGGAACGGCTGCGTCTCCTCCGCCGGAACCGATA 81
Query 190 CGATGCTGA-AAGAGACGGTGATT-GAGGCTATTAAGCTTGGTTATCGCCATTTCGACAC 247
| || ||| || | |||||| || ||||| || ||||| |||||||| || ||||||||
Sbjct 82 -G-TGTTGAGAA-AAACGGTG-TTGGAGGCCATCAAGCTCGGTTATCGTCACTTCGACAC 137
Query 248 CTCTCCAAGGTACCAAACGGAGGAGCCGATCGGCGAAGCTTTAGCGGAGGCGGTTTCACT 307
||||| |||||||| || ||||||||| ||||||||||| | ||||| || ||||| ||
Sbjct 138 GTCTCCGAGGTACCAGACAGAGGAGCCGCTCGGCGAAGCTCTGGCGGAAGCAGTTTCTCT 197
Query 308 CGGCTTAGTTCGATCTCGATCTGAATTCTTTGTCACTACCAAACTTTGGTGTGCTGATGC 367
|||||||| | ||||||||| ||| ||||||||||| | || || || |||| |||||
Sbjct 198 AGGCTTAGTCCAATCTCGATCGGAACTCTTTGTCACTTCTAAGCTATGTTGTGTTGATGT 257
Query 368 TCATGGTGGTCTCGTCGTACCGGCGA-TCAAACGGAGTTTGAAAAAC-CTTAAACTGGAC 425
||||| ||| || || |||||||||| || ||| ||||||| |||| ||||||||||||
Sbjct 258 TCATGTTGGCCTTGTTGTACCGGCGATTC-AACAGAGTTTG-GAAACTCTTAAACTGGAC 315
Query 426 TATCTTGATCTTTATATAATTCATTGGCCGGTTAGCTCGAAACCTGGTAAATACAAGTTT 485
||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 316 TATCTCGATCTCTACCTAATTCATTGGCCGGTTAGCTCGAAACCTGGTAAATACAAGTTT 375
Query 486 CCTATTGATGAAGATGATTTTATGCCAATGGATT-TCGAAGTAGTGTGGTCTGAAATGGA 544
|||||||| |||||||||||| |||||||||||| | |||| ||| |||||||| |||||
Sbjct 376 CCTATTGAAGAAGATGATTTTTTGCCAATGGATTAT-GAAGCAGTATGGTCTGAGATGGA 434
Query 545 GGAGTGTCAGAGACTTGG-GCTCGCAAAATGCATAGGAGTAAGCAATTTTTCATGTAAGA 603
|||||||||||||| || | | ||||| || |||||||||||||| || || || ||||
Sbjct 435 AGAGTGTCAGAGACTCGGAG-TTGCAAAGTGTATAGGAGTAAGCAACTTCTCGTGCAAGA 493
Query 604 AGCTTCAACACATACTCTCTATCGCGACAATCCCGCCTAGCGTCAATCAAGTTGAGATGA 663
|||| ||||| || | |||| | || | ||| | || | | | | || |
Sbjct 494 AGCTCCAACATAT-C-CTCTCT-GCCAAAAT--C-CC-A----C---C----T-AG-T-- 531
Query 664 GTCCAATATGGCAACAAAGAAAGCTAAGGGAGCTTTGT-AGATCGAACGACATTGTTGTC 722
|| | | || |||||||| || ||||| |||||| || || || | |||||||||
Sbjct 532 GT-C-A-AT-----CAAAGAAAACTGAGGGAACTTTGTAAG-TCTAAAGGCATTGTTGTG 582
Query 723 ACAGCGTACTCGGTGTTGGGATCTAGAGGAGCTTTTTGGGGAACTCCCAAAATTATGGAA 782
||||| || ||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 583 ACAGCTTATTCGGTGTTGGGATCTAGAGGAGCTTTTTGGGGAACTCACAAAATCATGGAG 642
Query 783 TCTGATGTTCTCAAAGAAATAGCAGAAGCAAAGGAAAAAACAGTGGCCCAGGTGAGTATG 842
|||||||||||||||||||| || | ||||||| ||||||||| || ||| ||||||||
Sbjct 643 TCTGATGTTCTCAAAGAAATTGCTGTGGCAAAGGGAAAAACAGTAGCACAGATGAGTATG 702
Query 843 AGATGGGCTTATGAACAAGGAGTGAGCATGGTAGTGAAGAGCTTTACCAAAGAGAGATTA 902
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 703 AGATGGGCTTATGAACAAGGAGTGAGCATGGTGGTGAAGAGCTTTACCAAAGAGAGGCCG 762
Query 903 GAAGAGAATCTAAAGATATTTGATTGGTCTTTGACAGAGGATGAGACACAGAGAATTTCA 962
||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 763 GAAGAGAATCTGAAGATATTTGATTGGTCTTTGACAGAGGAGGAGAAACAGAGAATTTCG 822
Query 963 ACTGAGATTCCTCAGTTCAGAAACGTCCACGGAGAGGTTTATACCTCTA-AGAAAGGTCC 1021
|| |||||| ||||| ||| | ||| ||||||||||||||| ||| | |||| ||| |
Sbjct 823 ACGGAGATTTCTCAGAGCAGGATCGTTGACGGAGAGGTTTATATCTC-AGAGAACGGTTC 881
Query 1022 CATCAAATCTGTCGCCGAGATGTGGGACGGGGAGATCTGA 1061
|| ||||||||| |||||||||||||||| ||||| |||
Sbjct 882 TATAAAATCTGTCACCGAGATGTGGGACGGTGAGATATGA 921
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43993846218
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5