BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G59970.1
Length=1343
Score E
Sequences producing significant alignments: (Bits) Value
Ahg907478 jgi|Araly1|907478|Al_scaffold_0002_559 1450 0.0
Ahg893382 jgi|Araly1|893382|Al_scaffold_0006_1378 760 0.0
Ahg911114 jgi|Araly1|911114|Al_scaffold_0001_1368 462 2e-129
Ahg923336 jgi|Araly1|923336|scaffold_104617.1 350 2e-95
> Ahg907478 jgi|Araly1|907478|Al_scaffold_0002_559
Length=1056
Score = 1450 bits (785), Expect = 0.0
Identities = 963/1049 (92%), Gaps = 12/1049 (1%)
Strand=Plus/Plus
Query 111 TGAATCCAATCTCAGCAAAATTCTACACTAACGTCTCTTCAATCCCACCGTTACAATTCC 170
|||||||||||||||| ||||||||| | |||||||||||||| ||||||||||||||||
Sbjct 11 TGAATCCAATCTCAGCCAAATTCTACTCCAACGTCTCTTCAATTCCACCGTTACAATTCC 70
Query 171 TAAACGCAACGCAAAACGCATGGGAAACATTCTCCAAACTCGCCGGTTGTCACATCGGAG 230
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 71 TAAACGCAACACAAAACGCATGGGAAACATTCTCAAAACTCGCCGGTTGTCACATCGGAG 130
Query 231 AAAATATCAACGGCCTCTCAAAACTCAAACAATACTTTCGCCGTTTCGGTTATATCACCA 290
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 131 AAAATATCAACGGTCTCTCAAAACTCAAACAATACTTTCGCCGTTTCGGTTACATCACCG 190
Query 291 CCACCGGTAATTGCACTGACGATTTCGATGACGTGCTTCAATCAGCGATCAACACTTACC 350
||| ||||||||| |||||||| |||||||| |||||||| |||||||| |||||||
Sbjct 191 GTACCAATAATTGCACAGACGATTTTGATGACGTACTTCAATCGGCGATCAATACTTACC 250
Query 351 AGAAAAATTTCAATCTCAAAGTCACCGGAAAACTCGATTCCTCGACTCTCCGGCAAATCG 410
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 251 AGAAAAATTTCAATCTCAAAGTCACCGGAAAACTCGATTCGTCGACTCTCCGGCAAATCG 310
Query 411 TTAAACCGAGATGCGGGAATCCGGATTTGATCGACGGGGTTTCGGAGATGAACGGTGGTA 470
|||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
Sbjct 311 TTAAACCGAGATGCGGGAATCCGGATATGATCGACGGAGTTTCGGAGATGAACGGTGG-A 369
Query 471 AGATA-CTCCGTACGACTGAGAAATACTCGTTTTTCCCCGGGAAGCCACGGTGGCCGAAA 529
| | | || ||| |||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 370 AAAAAGCTTCGTGCGACGGAGCGGTACTCGTTTTTCCCCGGGAAGCCACGGTGGCCGAAA 429
Query 530 CGGAAACGAGATCTGACTTATGCGTTTGCGCCGCAGAATAATTTAACAGACGAGGTTAAA 589
|||||||| ||||||||||| ||||||| ||||||||||||| |||| ||||||||||||
Sbjct 430 CGGAAACGCGATCTGACTTACGCGTTTGTGCCGCAGAATAATCTAACCGACGAGGTTAAA 489
Query 590 CGCGTGTTCT-CACGCGCCTTCACGCGTTGGGCGGAGGTGACTCCGTTGAATTTCACGCG 648
|||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 490 CGCGTGTT-TGCACGCGCCTTCACGCGTTGGGCTGAGGTGACTCCGTTGAATTTCACGCG 548
Query 649 CTCTGAGTCTATCCTCCGTGCGGATATAGTGATCGGATTTTTCTCCGGTGAACATGGTGA 708
|||||||||| ||||| | || ||||||||||||||||||||||||||||||||||||||
Sbjct 549 CTCTGAGTCTCTCCTCGGAGCTGATATAGTGATCGGATTTTTCTCCGGTGAACATGGTGA 608
Query 709 TGGAGAGCCGTTTGATGGAGCTATGGGAACATTAGCGCATGCTTCTTCGCCTCCTACGGG 768
||||||||||||||||||||| ||||||||||||||||| ||||| || |||||||||||
Sbjct 609 TGGAGAGCCGTTTGATGGAGCGATGGGAACATTAGCGCACGCTTCGTCTCCTCCTACGGG 668
Query 769 GATGTTACATTTAGACGGTGATGAGGATTGGTTGATCTCTAACGGTGAAATTAGTCGTCG 828
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 669 GATGTTACATTTAGACGGTGATGAGGATTGGTTGATCTCTGACGGTGAAATTAGCCGTCG 728
Query 829 GATATTACCGGTGACGACGGTGGTGGATCTTGAATCGGTGGCTGTTCATGAGATTGGTCA 888
| | |||||||||||| ||||||||||||||||||||||||| || |||||||| || ||
Sbjct 729 GGTTTTACCGGTGACGTCGGTGGTGGATCTTGAATCGGTGGCGGTACATGAGATCGGACA 788
Query 889 TCTTTTAGGGCTAGGTCATTCGTCGGTGGAAGATGCGATTATGTTTCCGGCGATTTCTGG 948
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 789 TCTTTTAGGGTTAGGTCACTCGTCGGTGGAAGATGCGATTATGTTTCCGGCGATTTCTGG 848
Query 949 TGGAGATCGGAAAGTGGAGTTAGCTAAGGATGATATCGAAGGGATTCAGCATTTGTACGG 1008
||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 849 TGGCGATCGGAAAGTGGAGTTAGCGAAGGATGATATTGAAGGGATTCAGCATTTGTACGG 908
Query 1009 TGGTAATCCGAATGGAGACGGTGGTGGTTCGAAACCTAGCCGTGAGAGTCAATCTACCGG 1068
|| |||||||| ||||||||||||| |||||| |||||||| |||| | |||| |||||
Sbjct 909 AGGAAATCCGAACGGAGACGGTGGTGTTTCGAAGCCTAGCCGGGAGAATGAATCCACCGG 968
Query 1069 TGG---TG---ATAGCGTTCGTCGGTGGAGAGGGT-GGATGATTAGCTTATCATCGATTG 1121
||| || ||||||||||||||||||| |||| || || ||| | ||||||||||||
Sbjct 969 TGGCGCTGGTGATAGCGTTCGTCGGTGGAGTGGGTTGG-TGTTTATCCTATCATCGATTG 1027
Query 1122 CCACGTGTATATTCTTGATTTCTGTTTAG 1150
|||||||| ||| ||||||| |||||||
Sbjct 1028 CCACGTGTCTATGGTTGATTTGTGTTTAG 1056
> Ahg893382 jgi|Araly1|893382|Al_scaffold_0006_1378
Length=573
Score = 760 bits (411), Expect = 0.0
Identities = 511/559 (91%), Gaps = 7/559 (1%)
Strand=Plus/Plus
Query 373 CACCGGAAAACTCGATTCCTCGACTCTCCGGCAAATCGTTAAACCGAGATGCGGGAATCC 432
|||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1 CACCGGAAAACTCGATTCGTCGACTCT-AGGCAAATCGTTAAACCGAGATGCGGGAATCC 59
Query 433 GGATTTGATCGACGGGGTTTCGGAGATGAACGGTGGTAAGATA-CTCCGTACGACTG-AG 490
|||| ||||||||| |||||||||||||||||||| |||| | || |||||||| | ||
Sbjct 60 GGATACGATCGACGGAGTTTCGGAGATGAACGGTGG-AAGAAAGCTTCGTACGAC-GAAG 117
Query 491 AAATACTCGTTTTTCCCCGGGAAGCCACGGTGGCCGAAACGGAAACGAGATCTGACTTAT 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 CGGTACTCGTTTTTCCCCGGGAAGCCACGGTGGCCGAAACGGAAACGAGATCTGACTTAC 177
Query 551 GCGTTTGCGCCGCAGAATAATTTAACAGACGAGGTTAAACGCGTGTTCT-CACGCGCCTT 609
||||||| || |||||| |||||||| ||| | |||||||||||||| | ||||||||||
Sbjct 178 GCGTTTGTGCAGCAGAACAATTTAACCGACAATGTTAAACGCGTGTT-TGCACGCGCCTT 236
Query 610 CACGCGTTGGGCGGAGGTGACTCCGTTGAATTTCACGCGCTCTGAGTCTATCCTCCGTGC 669
||||| |||||||||||||||||||||||||||||||||||||||||| ||||| | ||
Sbjct 237 CACGCAATGGGCGGAGGTGACTCCGTTGAATTTCACGCGCTCTGAGTCTCTCCTCGGAGC 296
Query 670 GGATATAGTGATCGGATTTTTCTCCGGTGAACATGGTGATGGAGAGCCGTTTGATGGAGC 729
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 297 TGATATAGTGATCGGATTTTTCTCCGGTGAACATGGAGATGGAGAGCCGTTTGATGGAGC 356
Query 730 TATGGGAACATTAGCGCATGCTTCTTCGCCTCCTACGGGGATGTTACATTTAGACGGTGA 789
|||||| ||||||||||| ||||| || ||||||| ||||||||||||||||||||||||
Sbjct 357 TATGGGGACATTAGCGCACGCTTCATCTCCTCCTAAGGGGATGTTACATTTAGACGGTGA 416
Query 790 TGAGGATTGGTTGATCTCTAACGGTGAAATTAGTCGTCGGATATTACCGGTGACGACGGT 849
||||||||||||||||||| ||||||||||||| |||||| | |||||||||||| ||||
Sbjct 417 TGAGGATTGGTTGATCTCTGACGGTGAAATTAGCCGTCGGGTTTTACCGGTGACGTCGGT 476
Query 850 GGTGGATCTTGAATCGGTGGCTGTTCATGAGATTGGTCATCTTTTAGGGCTAGGTCATTC 909
||||||||||||||||||||| ||||||||||| || |||||||| ||| ||||||| ||
Sbjct 477 GGTGGATCTTGAATCGGTGGCGGTTCATGAGATCGGACATCTTTTGGGGTTAGGTCACTC 536
Query 910 GTCGGTGGAAGATGCGATT 928
||| |||||||||||||||
Sbjct 537 GTCAGTGGAAGATGCGATT 555
> Ahg911114 jgi|Araly1|911114|Al_scaffold_0001_1368
Length=564
Score = 462 bits (250), Expect = 2e-129
Identities = 286/304 (94%), Gaps = 0/304 (0%)
Strand=Plus/Plus
Query 626 GTGACTCCGTTGAATTTCACGCGCTCTGAGTCTATCCTCCGTGCGGATATAGTGATCGGA 685
||||||||||||||||||||||||||||||||| ||||| | || |||||||||||||||
Sbjct 220 GTGACTCCGTTGAATTTCACGCGCTCTGAGTCTCTCCTCGGAGCTGATATAGTGATCGGA 279
Query 686 TTTTTCTCCGGTGAACATGGTGATGGAGAGCCGTTTGATGGAGCTATGGGAACATTAGCG 745
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 280 TTTTTCTCCGGTGAACATGGAGATGGAGAGCCGTTTGATGGAGCTATGGGGACATTAGCG 339
Query 746 CATGCTTCTTCGCCTCCTACGGGGATGTTACATTTAGACGGTGATGAGGATTGGTTGATC 805
|| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 340 CACGCTTCATCTCCTCCTACGGGGATGTTACATTTAGACGGTGATGAGGATTGGTTGATC 399
Query 806 TCTAACGGTGAAATTAGTCGTCGGATATTACCGGTGACGACGGTGGTGGATCTTGAATCG 865
||||||||||||||||| |||||| | |||||||||||| ||||||||||||||||||||
Sbjct 400 TCTAACGGTGAAATTAGCCGTCGGGTTTTACCGGTGACGTCGGTGGTGGATCTTGAATCG 459
Query 866 GTGGCTGTTCATGAGATTGGTCATCTTTTAGGGCTAGGTCATTCGTCGGTGGAAGATGCG 925
||||| ||||||||||| || |||||||||||| ||||||| ||||||||||||||||||
Sbjct 460 GTGGCGGTTCATGAGATCGGACATCTTTTAGGGTTAGGTCACTCGTCGGTGGAAGATGCG 519
Query 926 ATTA 929
||||
Sbjct 520 ATTA 523
Score = 278 bits (150), Expect = 1e-73
Identities = 188/206 (91%), Gaps = 4/206 (2%)
Strand=Plus/Plus
Query 392 TCGACTCTCCGGCAAATCGTTAAACCGAGATGCGGGAATCCGGATTTGATCGACGGGGTT 451
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 19 TCGACTCTACGGCAAATCGTTAAACCGAGATGCGGGAATCCGGATACGATCGACGGAGTT 78
Query 452 TCGGAGATGAACGGTGGTAAGATA-CTCCGTACGACTG-AGAAATACTCGTTTTTCCCCG 509
||||||||||||||||| |||| | || |||||||| | || ||||||||||||||||
Sbjct 79 TCGGAGATGAACGGTGG-AAGAAAGCTTCGTACGAC-GAAGTGGTACTCGTTTTTCCCCG 136
Query 510 GGAAGCCACGGTGGCCGAAACGGAAACGAGATCTGACTTATGCGTTTGCGCCGCAGAATA 569
|||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
Sbjct 137 GGAAGCCACGGTGGCCGAAACGGAAACGAGATCTGACTTACGCGTTTGTGCCGCAGAACA 196
Query 570 ATTTAACAGACGAGGTTAAACGCGTG 595
||||||| ||||| ||||||||||||
Sbjct 197 ATTTAACCGACGATGTTAAACGCGTG 222
> Ahg923336 jgi|Araly1|923336|scaffold_104617.1
Length=398
Score = 350 bits (189), Expect = 2e-95
Identities = 222/238 (93%), Gaps = 1/238 (0%)
Strand=Plus/Plus
Query 626 GTGACTCCGTTGAATTTCACGCGCTCTGAGTCTATCCTCCGTGCGGATATAGTGATCGGA 685
||||||||||||||||||||||||||||||||| | ||| | || ||||||||||||| |
Sbjct 162 GTGACTCCGTTGAATTTCACGCGCTCTGAGTCTCTGCTCGGAGCTGATATAGTGATCGAA 221
Query 686 TTTTTCTCCGGTGAACATGGTGATGGAGAGCCGTTTGATGGAGCTATGGGAACATTAGCG 745
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 222 TTTTTCTCCGGTGAACATGGAGATGGAGAGCCGTTTGATGGAGCTATGGGGACATTAGCG 281
Query 746 CATGCTTCTTCGCCTCCTACGGGGATGTTACATTTAGACGGTGATGAGGATTGGTTGATC 805
|| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 282 CACGCTTCATCTCCTCCTACGGGGATGTTACATTTAGACGGTGATGAGGATTGGTTGATC 341
Query 806 TCTAACGGTGAAATTAGTCGTCGGATATTACCGGTGACGACGGTGGTGGATCTTGAAT 863
||| ||||||||||||| |||||| | |||||||||||| ||||||||||||||||||
Sbjct 342 TCTGACGGTGAAATTAGCCGTCGGGT-TTACCGGTGACGTCGGTGGTGGATCTTGAAT 398
Score = 211 bits (114), Expect = 1e-53
Identities = 144/158 (91%), Gaps = 4/158 (3%)
Strand=Plus/Plus
Query 402 GGCAAATCGTTAAACCGAGATGCGGGAATCCGGATTTGATCGACGGGGTTTCGGAGATGA 461
||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 2 GGCAAATCGTTAAACCGAGATGCGGGAATCCGGATACGATCGACGGAGTTTCGGAGATGA 61
Query 462 ACGGTGGTAAGATA-CTCCGTACGACTGA-GAAATACTCGTTTTTCCCCGGGAAGCCACG 519
||||||| |||| | || |||||||| || | |||||||||||||||||||||||| |
Sbjct 62 ACGGTGG-AAGAAAGCTTCGTACGAC-GAAGCGGTACTCGTTTTTCCCCGGGAAGCCATG 119
Query 520 GTGGCCGAAACGGAAACGAGATCTGACTTATGCGTTTG 557
|||||||||||||||||||||||||||||| |||||||
Sbjct 120 GTGGCCGAAACGGAAACGAGATCTGACTTACGCGTTTG 157
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50246004606
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5