BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G59980.1
Length=1685
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475312 jgi|Araly1|475312|fgenesh2_kg.2__442__AT1G59980.1 2473 0.0
> Ahg475312 jgi|Araly1|475312|fgenesh2_kg.2__442__AT1G59980.1
Length=1655
Score = 2473 bits (1339), Expect = 0.0
Identities = 1569/1675 (94%), Gaps = 36/1675 (2%)
Strand=Plus/Plus
Query 27 TGTCTCGTCTCTTCTCTCTTGTCTTCTCCAGATCAGTGTTTGTGGGGTTTTCCCAATGGA 86
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 1 TGTCTCGTCTCTTCTCTCTTGTCTTCTCCAGATCAGTGCTTGTGGGGTTTTCCCCATGGA 60
Query 87 GCTTCTTCTCTCATTGTCTCTCCTCCTGGGGTTTTGGTGTAACAACAATCCTCAATTCAC 146
|||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 61 GCTTCTTCTCTCTTTGTCTCTCCTCCTAGGGTTTTGGTGTAACAACAATCCACAATTCAC 120
Query 147 GAGGCATGAATCATTATTCTCCCCATTTGCTTATTCTCTGGC-TAGAATCCCCAGATTTT 205
||||||||||||||||||||||||| ||||| ||||||| || || |||||||||||||
Sbjct 121 GAGGCATGAATCATTATTCTCCCCACTTGCTAATTCTCTCGCGAAG-ATCCCCAGATTTT 179
Query 206 AC--TGT-ATCGACTTTGGGAATTTAACTGGAGAACCATTTCCACTCAAACTGGGAAACA 262
|| | | |||| ||||||||||||||||||| ||| |||| |||||||
Sbjct 180 ACTATATCATCGGCTTTGGGAATTTAACTGGACAACGATTT----TCAAACT-------- 227
Query 263 AAAACCTGTTATTGAACAATGGCCACTCATTCATCGAGATCGGAGAATAAAGACGCCGGA 322
||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 228 -----CTGATATTGAAAAATGGCCACACATTCATCGAGATCGGAGAATAAAGACGCCGGA 282
Query 323 GAAGAAGATGAGCTCCGACGAAGGAACCCTTATGAAGTCCTTGGCATCCCCAGCAATTCG 382
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 283 GAAGAAGATGAGCTCCGACGACGAAACCCTTATGAAGTCCTTGGCATCCCCAGCAATTCG 342
Query 383 ACTGATCAAGAGATCAAAAGTGCTTATCGGAGAATGGCTCTCAGGTACCATCCTGATAAG 442
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 343 ACTGATCAAGAGATCAAAAGTGCTTATCGAAGAATGGCTCTCAGGTACCATCCTGATAAG 402
Query 443 AATCCAGACGACCCGGTTGCAGCAGAGATGTTTAAGGAAGTTACATTTGCTTATGAGGTC 502
|||||| | || ||||||||||| || ||||||||||||||||||||||| |||||||||
Sbjct 403 AATCCAAATGATCCGGTTGCAGCGGATATGTTTAAGGAAGTTACATTTGCCTATGAGGTC 462
Query 503 TTGTCTGATCCTGAGAATCGGCGTCTATATGATACTACTGGCTCTGAGGCTGTGGGTCCG 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 463 TTGTCTGATCCTGAGAATCGGCGTCTATATGATACTACTGGCTCTGAGGCTGTGGGTCCG 522
Query 563 GAAAATGAAGACCTAGAGCTCGATCTGTCAAGCTTAGGAGCTGTTAATACTATATTTGCT 622
||||||||||| || ||||| ||||| || |||||||||||||||||||||||||||||
Sbjct 523 GAAAATGAAGATCTTGAGCTTGATCTTTCGAGCTTAGGAGCTGTTAATACTATATTTGCC 582
Query 623 GCATTGTTCAATAAGCTTGGTGTGCAAATTAAGACAACTGTTTCTGCAAATTTATTGGGG 682
|| |||||||||||||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct 583 GCGCTGTTCAATAAGCTTGGTGTGCAGATTAAGACAACCGTCTCTGCAAATTTATTGGGG 642
Query 683 GAGGCGTTGAATGGTACGGTTACTACTTTGCCTCTCATGGTTGGGCAAGTCGTGTCCAGG 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 643 GAGGCGTTGAATGGTACGGTTACTACTTTGCCTCTCATGGTTGGGCAAGTCGTGTCCAGG 702
Query 743 AAGGTTGAAAAGCAATCGGCTCACTTTTATTCGGTTACGTTAACAGAGGAAGAAGCTCAG 802
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 703 AAGGTTGAAAAGCAATCGGCTCACTTTTATTCGGTTACGTTAACAGAGGAAGAAGCCCAG 762
Query 803 GATGGATTGATATGTAAGGTGCATTCATCTGCTAAAAACAAATTCAAGTTGCTTTACTTT 862
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 763 GCTGGATTGATATGTAAGGTGCAGTCATCTGCTAAAAACAAATTCAAGTTGCTTTACTTT 822
Query 863 GACCAAGTAGAGAATGGAGGACTGAGCTTGGCCCTACAGGAAGACAGCAGGAAAACAGGA 922
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 823 GAACAAGTAGAGAATGGAGGACTGAGCTTGGCCCTACAGGAAGACAGCAGGAAAACAGGA 882
Query 923 AAGCTCTCGACTGCAGGGTTGTATTTTTTCGGCTTCCCTGTTTATCGTTTCGATCACAGG 982
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 883 AAGCTCTCGACTGCAGGGTTGTATTTCTTCGGCTTCCCTGTTTATCGTTTCGATCACAGG 942
Query 983 GTTAATTCAAGGGCTCTCTCAAGGGATCCAGAGACCGGATTTTTCAAAAGGCTTGATGCA 1042
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 943 GTCAATTCAAGGGCTCTCTCAAGGGATCCAGAAACCGGATTTTTCAAAAGGCTTGATACA 1002
Query 1043 TTCCAACCGTTTGAGATCACTGAACTTAAAGCTGGTTCTCATGTCTTTGCTGTTTATGGT 1102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1003 TTCCAACCGTTTGAGATCACTGAACTTAAAGCTGGTTCTCATGTCTTTGCTGTTTATGGT 1062
Query 1103 GACAATTTTTTCAAAAGTGTGAGCTACACTCTAGAAATATTCTCATCTGCTCCATTCGGT 1162
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1063 GATAATTTTTTCAAAAGTGTGAGCTACACTCTAGAAATATTCTCATCTGCTCCATTTGCT 1122
Query 1163 AACGAGAAAGAGAGTCTTCGGTCCACTGAAGCGCAGATAGTCTCAAAAAGAACAGAGCTA 1222
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1123 AATGAGAAAGAGAGTCTTCGGTCCACTGAAGCGCAGATAGTCTCAAAAAGAACCGAGCTA 1182
Query 1223 TTGAAGTTTGAAGCTGAATATCACGAGGTCTTTGCACAATTCACAGAAATGGCTAGCAAA 1282
|||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1183 TTGAAGTTTGAATCTGAATATCACGAGGTCTTTGCACAATTCACAGAGATGGCTAGTAAA 1242
Query 1283 TGCACAGGGGAAGTACAAGAGATTGATGAGCTTCTAAAGAGGAGGAATGAGATATGTGCG 1342
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1243 TGCACAGGGGAAGTACAAGAGATTGATGAGCTTCTTAAGAGGAGGAATGAGATATGTGCG 1302
Query 1343 GCTTACACAATCTTCCCACCAACGAAGCAAGGTTCAAGCAAGAGCAGAAGCTGGAGCAAG 1402
|| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 1303 GCGTACACAATCTTCCCACCATCGAAGCAAGGTTCAAGCAAGAACAGAAGCTGGAGCAAG 1362
Query 1403 --AA-GA--A-GA-G-----CAGTCTTTTAATGGAACCTAGAGAAGAAGGAGAAGTCGCA 1450
|| || | || | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1363 GGAAAGAGCAAGAAGAAGAGCAGTCTTTTAATGGAACCTAGAGAAGAAGGAGAAGTCGCA 1422
Query 1451 GTTAGGGAAGAAGGTGGAGTCAAGAAGAAGAAATGGTACAATATTCAGCTGAGGCAAGAC 1510
||||||||||||| |||||| |||||||||||||||||||| |||||||| |||||||||
Sbjct 1423 GTTAGGGAAGAAGATGGAGTGAAGAAGAAGAAATGGTACAACATTCAGCTTAGGCAAGAC 1482
Query 1511 AAGaaaaaaaaCTGAAGAGACTACTGCAATCTTGAGTTTTCTTCAGGCACATAGCTATGT 1570
||||||||||||||| |||| ||||| ||||||||||||| |||||||||||||||||||
Sbjct 1483 AAGAAAAAAAACTGACGAGAGTACTGAAATCTTGAGTTTTTTTCAGGCACATAGCTATGT 1542
Query 1571 TCGAGAAACGATATATATATGTTTCAGTGATAATCTTTAGGGATTATCAACATCTTATAA 1630
|||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||
Sbjct 1543 TCGAGAAACGATATATAT--GTTTCAGTAATAATCTCTAGGGATTATCAACATCTTATAA 1600
Query 1631 AAAGTGGTCTATGGTTTATCTCTTTGCACACTTTGCCTGATTCATCTCTTCGTAT 1685
||||||||||||||||||||||||||| | |||||| |||||||||||||||||
Sbjct 1601 AAAGTGGTCTATGGTTTATCTCTTTGCGCGTTTTGCCGGATTCATCTCTTCGTAT 1655
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63191716455
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5