BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G59990.1 Length=2052 Score E Sequences producing significant alignments: (Bits) Value Ahg475311 jgi|Araly1|475311|fgenesh2_kg.2__441__AT1G59990.1 2968 0.0 > Ahg475311 jgi|Araly1|475311|fgenesh2_kg.2__441__AT1G59990.1 Length=1995 Score = 2968 bits (1607), Expect = 0.0 Identities = 1855/1972 (94%), Gaps = 28/1972 (1%) Strand=Plus/Plus Query 63 TATTTTGCTTAAACCCTAAAACCCT-TTTTGGATTAGGTTTTCTCCAAATCTTATCCGCC 121 ||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||| Sbjct 37 TATTTTGCTTAAACCCTAAAA-CCTCATTTGGATTAGGTTTTCTCC-AATCTTATCCGCC 94 Query 122 GTGATAAAATCTGATTGC----tt-tttttCTTCATGAAAGTTTGATTTGT-GAAACTCG 175 |||||||||||||||||| || |||||||| |||||| |||||||||| ||| | || Sbjct 95 GTGATAAAATCTGATTGCTTTTTTCTTTTTCTTTATGAAACTTTGATTTGTGGAATC-CG 153 Query 176 ATGATTCTCTCACGCTCTGTCTCCGTGCTTCATTTGTGTGGAGTCTCTTCTTCAGCGCCG 235 ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| Sbjct 154 ATGATTCTCTCACGCTCTGTCTCTGTGCTTCATTTGTGTGGAGTCTCATCTTCAGCGCCG 213 Query 236 TCGAAGCTCTTATCTCAGAGGTTCAAGGTCTCGTTCGCTCTCGCTTATGGTTCATCTGTT 295 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 214 TCGAAGCTCTTATCCCAGAGGTTCAAGGTCTCGTTCGCTCTCGCTTATGGTTCATCTGTT 273 Query 296 TCTTTCCGTTTAAGCTCTCTCAATCGATCTGATAG-AAAATGGGTTCGTGGGTTTGCGTC 354 |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| Sbjct 274 TCTTTCCGTTTAAGCTCTCTCAATCGATCTGA-CGCGAAATGGGTTCGTGGGTTTGCGTC 332 Query 355 TGCTACTGAAGCAGAAGTCGAGAAAAAGGGTAATGATACtttttttGCTGACCATACCGT 414 | |||||||||||||||| |||||||||||||||||||| |||||||| ||| ||||||| Sbjct 333 TACTACTGAAGCAGAAGTAGAGAAAAAGGGTAATGATACGTTTTTTGCCGACAATACCGT 392 Query 415 TTCTTGGAAGTCTCTTGGGTTATCAGATAATGTCTCTATAGCTCTTCGAGATTCTGGGTT 474 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 393 TTCTTGGAAGTCTCTTGGGTTATCAGATAACGTCTCTATAGCTCTTCGAGATTCTGGGTT 452 Query 475 CGATAGACCATCTCTTACTCAGGCTGTTTGCATACCGTCTATATTGTCTGGGAAAGATGT 534 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 453 CGATAGACCATCTCTCACTCAGGCTGTTTGCATACCGTCTATATTGTCTGGGAAAGATGT 512 Query 535 GATTGTTGCAGCAGAAACTGGTAGTGGTAAAACACATGGTTATCTTGCTCCAATAATTGA 594 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 513 GATTGTTGCAGCAGAAACTGGTAGTGGTAAAACACATGGATATCTTGCTCCAATAATTGA 572 Query 595 TCAATTAACAAACACCGCTCTTGATTCCGAGGT-TACGAATAGAGAGGAAAGACCGTTTC 653 || |||||| ||||| ||| |||||||||| || ||||||| | |||||||| ||||||| Sbjct 573 TCGATTAACGAACACTGCTATTGATTCCGA-GTATACGAATGGGGAGGAAAGGCCGTTTC 631 Query 654 CGCTTAAGAATATCTCTCTTATTCTGTGTCCAAATGTGATGCTTTGTGAACAAGTGGTTC 713 ||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||| Sbjct 632 CGCTTAAGAATCTCTCTCTTATCCTGTGTCCAAATGTGATGCTGTGTGAACAAGTGGTTA 691 Query 714 GGATGGTTAATGGTCTTGTTGATGAAGATGGTAATCCACTTCTTAGAGTTGAAGCTGTGT 773 ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| | Sbjct 692 GGATGGTTAATGGTCTTCTTGGTGAAGATGGTAATCCACTTCTTAGAGTTGAAGCTGTTT 751 Query 774 GTGGAT-CTCAGGGTTGGCCAGATAGACTCCCTGATATAATTGTTTCGACACCTGCTGCT 832 || | | | |||||||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct 752 GT-GTTCCACAGGGTTGGCCAGATAGACTGCCTGATATAATTGTTTCGACACCCGCTGCT 810 Query 833 CTTCTTAATAATATTGAGCCGAAAAGAAATAGGCGTCTGGAATTTCTACGATGTGTCAAA 892 ||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 811 CTTCTGAATAATATTGAGCCGAAAAGAAATAGGCGCCTGGAATTTCTTCGATGTGTCAAA 870 Query 893 TATGTGGTCTTTGATGAAGCTGATATGCTTCTGTGTGGAAGCTTCCAGAATCAGATTATC 952 |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct 871 TATGTGGTCTTTGATGAAGCTGATATGCTTCTTTGCGGAAGCTTCCAGAATCAGATTATA 930 Query 953 CGTCTGATAAATATGCTGCGTTTCGATGAGAAACAGGTGTCTCGTTTGGCTAAATCCA-A 1011 |||||||||||||||||||||||||||||||| || |||||||||||||||| ||||| | Sbjct 931 CGTCTGATAAATATGCTGCGTTTCGATGAGAAGCAAGTGTCTCGTTTGGCTACATCCACA 990 Query 1012 TCTTGGCAGACCAATGGAGATTGATGCCTCTGTACCCCAAATTGATCTAGAAAATGAGGA 1071 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 991 -ATTGGCAAACCAATGGAGATTGATGCCTCTGTACCCCAAATTGATCTAGAAAATGAGGA 1049 Query 1072 TGATGCAGAATTCGATGAAGGATCTATTTCTGAGGAAGAGGATGAAGAAGAGGAAGAGGA 1131 |||||| ||||||||||| |||||||||||||||| | | || | |||||||||||||| Sbjct 1050 TGATGCTGAATTCGATGATGGATCTATTTCTGAGG-A-A-GA-G--GAAGAGGAAGAGGA 1103 Query 1132 ATATCTTGATGATATAGCACAAATGCCTAGTGTTGAAGCTGAAGCTGGGTCAGATACTAA 1191 |||||||||||||| |||||| |||||||||||||||||||||||| ||||||| || || Sbjct 1104 ATATCTTGATGATACAGCACATATGCCTAGTGTTGAAGCTGAAGCTCGGTCAGACACCAA 1163 Query 1192 AAAGGGCTGGAGAAGAGTGAGAAAGATCTATACCCGTAGTAAGCAGTATATTTTCATTGC 1251 |||||||||||| ||||||||||||||||| | |||||| ||||||||||| |||||||| Sbjct 1164 AAAGGGCTGGAGGAGAGTGAGAAAGATCTACAGCCGTAGCAAGCAGTATATCTTCATTGC 1223 Query 1252 AGCCACACTTCCAGTTAACGGGAAGAAGACTGCCGGGGGAATTTTGAAACATATGTTTCA 1311 |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| Sbjct 1224 AGCCACACTTCCAGTTAATGGGAAGAAGACTGCCGGAGGAATTTTGAAACATATGTTTCA 1283 Query 1312 AGATGCTGTTTGGGTTAGCGGAAACTTTCTTCACCGAAACAGTCCGAGACTAAAGCAAAA 1371 ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct 1284 AGATGCTATTTGGGTTAGTGGAAACTTTCTTCACCGAAACAGTCCGAGACTAAAGCATAA 1343 Query 1372 ATGGGTTGAAGTCACAGTAGACTCACAGGTTGATGCTCTTATAGAGGCTGTAAAAAACAA 1431 |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct 1344 ATGGGTTGAAGTCACAGTTGACTCACAAGTTGATGCTCTTATAGAGGCTGTAAAAAACAA 1403 Query 1432 TAACAACACCAACACAGAGAGGACAATGGTGTTTGCAAACACGGTCGAAGCTGTTGAAGC 1491 |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct 1404 TAACAACACCAACACAGAGAGGACGATGGTGTTTGCAAACACGGTTGAAGCTGTTGAAGC 1463 Query 1492 AGTGGCCGATATATTGGAGAAAGCTAGTATCCAGTGTTACCGTTATCACAAGAATCACAA 1551 |||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||| Sbjct 1464 AGTGGCCGATATATTGGAGAAAGCTAGTATTCAGTGTTATCGTTATCACAAGAACCACAA 1523 Query 1552 GCTAGACGAACGTGCTAATATATTAGCTGATTTCAGAGAAACTGGTGGTGTCTTTGTTTG 1611 |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 1524 GCTAGACGAACGTGCTAATATATTAGCTGATTTCAGAGAAACCGGCGGTGTCTTTGTTTG 1583 Query 1612 CACTGATGCGGCTGCCCGTGGAGTTGATGTTCCTAATGTCTCACACGTTATTCAGGCGGA 1671 ||| ||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct 1584 CACCGATGCCGCTGCCCGAGGAGTTGATGTTCCTAATGTCTCTCACGTTATTCAGGCGGA 1643 Query 1672 TTTTGCTAGTTCTGCAGTGGATTTCCTTCACAGGATTGGTCGAACAGCTAGAGCTGGGCA 1731 |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| Sbjct 1644 TTTTGCTAGTTCTGCAGTGGATTTCCTTCACAGGATAGGCCGAACAGCTAGAGCTGGGCA 1703 Query 1732 ATATGGAACTGTGACCAGTCTATACACCGAGGCTAACCGTGATTTAGTAGAGGCAATCCG 1791 |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| || Sbjct 1704 ATATGGAACTGTGACCAGTCTATACACCGAGGCTAATCGTGATTTAGTAGAAGCAATACG 1763 Query 1792 TGAAGCAGTGAAGATGGGTCAGCCAGTGGAAACTGCATTCAGCAGGAAGAGAGGTTTTAG 1851 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1764 TGAAGCAGTGAAGATGGGTCAGCCAGTGGAAACTGCATTCAGCAGGAAGAGAGGTTTTAG 1823 Query 1852 GAACAAGGTTAAGAAGAGAGCTTTTTTGAAAGCTGAAGAAGCAGAGGAGCCTCAAGCTGT 1911 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1824 GAACAAGGTTAAGAAGAGAGCTTTTTTGAAAGCTGGAGAAGCAGAGGAGCCTCAAGCTGT 1883 Query 1912 GAGATATTAAGTTCTGTTGtttt-tttt-ACAATTCCATAGAT-TTGTT-GTATATAGAA 1967 ||||| ||||||||||||||||| |||| |||||| ||||| ||||| |||||||||| Sbjct 1884 GAGATTTTAAGTTCTGTTGTTTTCTTTTTACAATTTCATAGGCGTTGTTTGTATATAGAA 1943 Query 1968 GTACTCAAAATCGAATAATCACTATCTGTTATTTTCTTGTACCAAATTTTTT 2019 |||| |||||||||||||||||||| ||||||||||||||||||| |||||| Sbjct 1944 GTACGCAAAATCGAATAATCACTATTTGTTATTTTCTTGTACCAATTTTTTT 1995 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 77170836370 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5