BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G59990.1
Length=2052
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475311 jgi|Araly1|475311|fgenesh2_kg.2__441__AT1G59990.1 2968 0.0
> Ahg475311 jgi|Araly1|475311|fgenesh2_kg.2__441__AT1G59990.1
Length=1995
Score = 2968 bits (1607), Expect = 0.0
Identities = 1855/1972 (94%), Gaps = 28/1972 (1%)
Strand=Plus/Plus
Query 63 TATTTTGCTTAAACCCTAAAACCCT-TTTTGGATTAGGTTTTCTCCAAATCTTATCCGCC 121
||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||
Sbjct 37 TATTTTGCTTAAACCCTAAAA-CCTCATTTGGATTAGGTTTTCTCC-AATCTTATCCGCC 94
Query 122 GTGATAAAATCTGATTGC----tt-tttttCTTCATGAAAGTTTGATTTGT-GAAACTCG 175
|||||||||||||||||| || |||||||| |||||| |||||||||| ||| | ||
Sbjct 95 GTGATAAAATCTGATTGCTTTTTTCTTTTTCTTTATGAAACTTTGATTTGTGGAATC-CG 153
Query 176 ATGATTCTCTCACGCTCTGTCTCCGTGCTTCATTTGTGTGGAGTCTCTTCTTCAGCGCCG 235
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 154 ATGATTCTCTCACGCTCTGTCTCTGTGCTTCATTTGTGTGGAGTCTCATCTTCAGCGCCG 213
Query 236 TCGAAGCTCTTATCTCAGAGGTTCAAGGTCTCGTTCGCTCTCGCTTATGGTTCATCTGTT 295
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 214 TCGAAGCTCTTATCCCAGAGGTTCAAGGTCTCGTTCGCTCTCGCTTATGGTTCATCTGTT 273
Query 296 TCTTTCCGTTTAAGCTCTCTCAATCGATCTGATAG-AAAATGGGTTCGTGGGTTTGCGTC 354
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 274 TCTTTCCGTTTAAGCTCTCTCAATCGATCTGA-CGCGAAATGGGTTCGTGGGTTTGCGTC 332
Query 355 TGCTACTGAAGCAGAAGTCGAGAAAAAGGGTAATGATACtttttttGCTGACCATACCGT 414
| |||||||||||||||| |||||||||||||||||||| |||||||| ||| |||||||
Sbjct 333 TACTACTGAAGCAGAAGTAGAGAAAAAGGGTAATGATACGTTTTTTGCCGACAATACCGT 392
Query 415 TTCTTGGAAGTCTCTTGGGTTATCAGATAATGTCTCTATAGCTCTTCGAGATTCTGGGTT 474
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 393 TTCTTGGAAGTCTCTTGGGTTATCAGATAACGTCTCTATAGCTCTTCGAGATTCTGGGTT 452
Query 475 CGATAGACCATCTCTTACTCAGGCTGTTTGCATACCGTCTATATTGTCTGGGAAAGATGT 534
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 453 CGATAGACCATCTCTCACTCAGGCTGTTTGCATACCGTCTATATTGTCTGGGAAAGATGT 512
Query 535 GATTGTTGCAGCAGAAACTGGTAGTGGTAAAACACATGGTTATCTTGCTCCAATAATTGA 594
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 513 GATTGTTGCAGCAGAAACTGGTAGTGGTAAAACACATGGATATCTTGCTCCAATAATTGA 572
Query 595 TCAATTAACAAACACCGCTCTTGATTCCGAGGT-TACGAATAGAGAGGAAAGACCGTTTC 653
|| |||||| ||||| ||| |||||||||| || ||||||| | |||||||| |||||||
Sbjct 573 TCGATTAACGAACACTGCTATTGATTCCGA-GTATACGAATGGGGAGGAAAGGCCGTTTC 631
Query 654 CGCTTAAGAATATCTCTCTTATTCTGTGTCCAAATGTGATGCTTTGTGAACAAGTGGTTC 713
||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 632 CGCTTAAGAATCTCTCTCTTATCCTGTGTCCAAATGTGATGCTGTGTGAACAAGTGGTTA 691
Query 714 GGATGGTTAATGGTCTTGTTGATGAAGATGGTAATCCACTTCTTAGAGTTGAAGCTGTGT 773
||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
Sbjct 692 GGATGGTTAATGGTCTTCTTGGTGAAGATGGTAATCCACTTCTTAGAGTTGAAGCTGTTT 751
Query 774 GTGGAT-CTCAGGGTTGGCCAGATAGACTCCCTGATATAATTGTTTCGACACCTGCTGCT 832
|| | | | |||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 752 GT-GTTCCACAGGGTTGGCCAGATAGACTGCCTGATATAATTGTTTCGACACCCGCTGCT 810
Query 833 CTTCTTAATAATATTGAGCCGAAAAGAAATAGGCGTCTGGAATTTCTACGATGTGTCAAA 892
||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 811 CTTCTGAATAATATTGAGCCGAAAAGAAATAGGCGCCTGGAATTTCTTCGATGTGTCAAA 870
Query 893 TATGTGGTCTTTGATGAAGCTGATATGCTTCTGTGTGGAAGCTTCCAGAATCAGATTATC 952
|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 871 TATGTGGTCTTTGATGAAGCTGATATGCTTCTTTGCGGAAGCTTCCAGAATCAGATTATA 930
Query 953 CGTCTGATAAATATGCTGCGTTTCGATGAGAAACAGGTGTCTCGTTTGGCTAAATCCA-A 1011
|||||||||||||||||||||||||||||||| || |||||||||||||||| ||||| |
Sbjct 931 CGTCTGATAAATATGCTGCGTTTCGATGAGAAGCAAGTGTCTCGTTTGGCTACATCCACA 990
Query 1012 TCTTGGCAGACCAATGGAGATTGATGCCTCTGTACCCCAAATTGATCTAGAAAATGAGGA 1071
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 991 -ATTGGCAAACCAATGGAGATTGATGCCTCTGTACCCCAAATTGATCTAGAAAATGAGGA 1049
Query 1072 TGATGCAGAATTCGATGAAGGATCTATTTCTGAGGAAGAGGATGAAGAAGAGGAAGAGGA 1131
|||||| ||||||||||| |||||||||||||||| | | || | ||||||||||||||
Sbjct 1050 TGATGCTGAATTCGATGATGGATCTATTTCTGAGG-A-A-GA-G--GAAGAGGAAGAGGA 1103
Query 1132 ATATCTTGATGATATAGCACAAATGCCTAGTGTTGAAGCTGAAGCTGGGTCAGATACTAA 1191
|||||||||||||| |||||| |||||||||||||||||||||||| ||||||| || ||
Sbjct 1104 ATATCTTGATGATACAGCACATATGCCTAGTGTTGAAGCTGAAGCTCGGTCAGACACCAA 1163
Query 1192 AAAGGGCTGGAGAAGAGTGAGAAAGATCTATACCCGTAGTAAGCAGTATATTTTCATTGC 1251
|||||||||||| ||||||||||||||||| | |||||| ||||||||||| ||||||||
Sbjct 1164 AAAGGGCTGGAGGAGAGTGAGAAAGATCTACAGCCGTAGCAAGCAGTATATCTTCATTGC 1223
Query 1252 AGCCACACTTCCAGTTAACGGGAAGAAGACTGCCGGGGGAATTTTGAAACATATGTTTCA 1311
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1224 AGCCACACTTCCAGTTAATGGGAAGAAGACTGCCGGAGGAATTTTGAAACATATGTTTCA 1283
Query 1312 AGATGCTGTTTGGGTTAGCGGAAACTTTCTTCACCGAAACAGTCCGAGACTAAAGCAAAA 1371
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1284 AGATGCTATTTGGGTTAGTGGAAACTTTCTTCACCGAAACAGTCCGAGACTAAAGCATAA 1343
Query 1372 ATGGGTTGAAGTCACAGTAGACTCACAGGTTGATGCTCTTATAGAGGCTGTAAAAAACAA 1431
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1344 ATGGGTTGAAGTCACAGTTGACTCACAAGTTGATGCTCTTATAGAGGCTGTAAAAAACAA 1403
Query 1432 TAACAACACCAACACAGAGAGGACAATGGTGTTTGCAAACACGGTCGAAGCTGTTGAAGC 1491
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1404 TAACAACACCAACACAGAGAGGACGATGGTGTTTGCAAACACGGTTGAAGCTGTTGAAGC 1463
Query 1492 AGTGGCCGATATATTGGAGAAAGCTAGTATCCAGTGTTACCGTTATCACAAGAATCACAA 1551
|||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||
Sbjct 1464 AGTGGCCGATATATTGGAGAAAGCTAGTATTCAGTGTTATCGTTATCACAAGAACCACAA 1523
Query 1552 GCTAGACGAACGTGCTAATATATTAGCTGATTTCAGAGAAACTGGTGGTGTCTTTGTTTG 1611
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1524 GCTAGACGAACGTGCTAATATATTAGCTGATTTCAGAGAAACCGGCGGTGTCTTTGTTTG 1583
Query 1612 CACTGATGCGGCTGCCCGTGGAGTTGATGTTCCTAATGTCTCACACGTTATTCAGGCGGA 1671
||| ||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1584 CACCGATGCCGCTGCCCGAGGAGTTGATGTTCCTAATGTCTCTCACGTTATTCAGGCGGA 1643
Query 1672 TTTTGCTAGTTCTGCAGTGGATTTCCTTCACAGGATTGGTCGAACAGCTAGAGCTGGGCA 1731
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1644 TTTTGCTAGTTCTGCAGTGGATTTCCTTCACAGGATAGGCCGAACAGCTAGAGCTGGGCA 1703
Query 1732 ATATGGAACTGTGACCAGTCTATACACCGAGGCTAACCGTGATTTAGTAGAGGCAATCCG 1791
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||
Sbjct 1704 ATATGGAACTGTGACCAGTCTATACACCGAGGCTAATCGTGATTTAGTAGAAGCAATACG 1763
Query 1792 TGAAGCAGTGAAGATGGGTCAGCCAGTGGAAACTGCATTCAGCAGGAAGAGAGGTTTTAG 1851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1764 TGAAGCAGTGAAGATGGGTCAGCCAGTGGAAACTGCATTCAGCAGGAAGAGAGGTTTTAG 1823
Query 1852 GAACAAGGTTAAGAAGAGAGCTTTTTTGAAAGCTGAAGAAGCAGAGGAGCCTCAAGCTGT 1911
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1824 GAACAAGGTTAAGAAGAGAGCTTTTTTGAAAGCTGGAGAAGCAGAGGAGCCTCAAGCTGT 1883
Query 1912 GAGATATTAAGTTCTGTTGtttt-tttt-ACAATTCCATAGAT-TTGTT-GTATATAGAA 1967
||||| ||||||||||||||||| |||| |||||| ||||| ||||| ||||||||||
Sbjct 1884 GAGATTTTAAGTTCTGTTGTTTTCTTTTTACAATTTCATAGGCGTTGTTTGTATATAGAA 1943
Query 1968 GTACTCAAAATCGAATAATCACTATCTGTTATTTTCTTGTACCAAATTTTTT 2019
|||| |||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 1944 GTACGCAAAATCGAATAATCACTATTTGTTATTTTCTTGTACCAATTTTTTT 1995
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77170836370
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5