BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G60000.1
Length=972
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475310 jgi|Araly1|475310|fgenesh2_kg.2__440__AT1G60000.1 1245 0.0
> Ahg475310 jgi|Araly1|475310|fgenesh2_kg.2__440__AT1G60000.1
Length=935
Score = 1245 bits (674), Expect = 0.0
Identities = 849/930 (91%), Gaps = 26/930 (3%)
Strand=Plus/Plus
Query 1 ACTCTTTTGGCCTTATCCGAAATCTTTTTGTGGGCAGAAACGTTTGTGTCTTAGGCCAAT 60
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 1 ACTCTTTTGGCCTTATCCGAAATCTTTTTGTGGGCAGAATCGTCTGTGTCTTAGGCCAAT 60
Query 61 CTCTGTGTCTCTCTGTCCAGAGAGAAATGGCAGCATCATCAGTACTACTCTCGTGCTTCA 120
|||| |||||||||||||||||||||||||||| ||| ||| || ||||||||||||||
Sbjct 61 CTCTCTGTCTCTCTGTCCAGAGAGAAATGGCAGTTTCAACAGGACCACTCTCGTGCTTCA 120
Query 121 AATC-CCATCATCAACCAAACCTTC-TCCATGGCTGCAACTACTCATCTAACCAAACACT 178
|| | | |||||||||||||||||| ||| |||||||| | | |||||||||||||||||
Sbjct 121 AA-CTCAATCATCAACCAAACCTTCTTCC-TGGCTGCAGCAAATCATCTAACCAAACACT 178
Query 179 CCTCAGATTCAACTTTTCAACC-CCAAAACCTCTCCTGATCTCCTCACGGAGCTGCTCAC 237
|||| ||||| |||||| ||| | |||||||||| ||||||||||||| ||| ||||||
Sbjct 179 TCTCAAATTCAGCTTTTC-ACCTCTAAAACCTCTCTTGATCTCCTCACGCAGCGGCTCAC 237
Query 238 GACGATTCAGAGTCTTGTCAGAGACCATCACCGTCAAATTGGAAGAGGAGGAGAAGGATG 297
|||| |||||||||||| |||||||||||||||||||||| |||||||| | | | ||
Sbjct 238 GACGTTTCAGAGTCTTGCCAGAGACCATCACCGTCAAATTAGAAGAGGA-G-G-A-GA-- 291
Query 298 ATGGTGCAAGTGCTGTTCTTGATCCTCCTGCCGCCGTTAACACTAAGCTCTACTTCGGTA 357
| | | | ||||||||||||||| ||| |||||||||||||||||| ||||
Sbjct 292 A--G-G--A-------TCTTGATCCTCCTGCAGCCACTAACACTAAGCTCTACTTTGGTA 339
Query 358 ACTTGCCTTACAATGTTGACAGTGCAACTCTGGCTCAAATCATTCAAGATTTCGCTAACC 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 340 ACTTGCCTTACAATGTTGACAGTGCAACTCTGGCTCAAATCATTCAAGATTTCGCTAACC 399
Query 418 CTGAGCTCGTTGAGGTTCTTTACAACAGAGATACCGGACAGAGTCGTGGATTCGCCTTCG 477
||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
Sbjct 400 CTGAGCTCGTTGAGGTTCTTTACAACAGAGACACAGGACAGAGTCGTGGATTCGCCTTTG 459
Query 478 TTACCATGAGCAATGTCGAAGATTGCAACATCATCATCGATAACCTCGATGGAACTGAGT 537
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 460 TAACCATGAGCAATGTCGAAGATTGCAACGTCATCATCGATAACCTCGATGGAACTGAGT 519
Query 538 ATCTTGGTCGTGCTTTGAAAGTGAACTTTGCAGACAAACCAAAGCCTAACAAAGAACCTC 597
|||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 520 ATCTTGGTCGGGCTTTGAAAGTGAACTTTGCTGACAAACCAAAGCCTAATAAAGAACCTC 579
Query 598 TGTATCCAGAAACAGAGCACAAGCTCTTTGTTGGTAACTTATCATGGACTGTTACTTCCG 657
||||||||||||||||||| || || |||||||||||||| || ||||||||||||||||
Sbjct 580 TGTATCCAGAAACAGAGCATAAACTGTTTGTTGGTAACTTGTCTTGGACTGTTACTTCCG 639
Query 658 AGTCATTAGCTGGAGCGTTTCGAGAATGTGGAGATGTGGTTGGGGCTAGAGTTGTGTTTG 717
|||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||| ||
Sbjct 640 AGTCATTAGCTGGAGCGTTTAGAGAGTGTGGAGATGTGGTTGGAGCTAGAGTTGTGTATG 699
Query 718 ATGGAGATACAGGAAGATCACGGGGTTATGGCTTTGTATGTTACTCTTCCAAAGCAGAAA 777
|||||||||| ||||||||||| |||||||||||||| ||||||||||||||||| ||||
Sbjct 700 ATGGAGATACCGGAAGATCACGAGGTTATGGCTTTGTGTGTTACTCTTCCAAAGCGGAAA 759
Query 778 TGGAAACCGCTCTTGAATCGCTTGACGGATTTGAGCTGGAGGGTCGGGCGATTCGAGTAA 837
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 760 TGGAAACCGCGCTTGAATCGCTTGACGGATTTGAGCTTGAGGGTCGGGCGATTCGAGTAA 819
Query 838 ACCTTG-CTCAAGGGAAGAAATTTTGATATCATACAACAACATTGTGTAATCATTTAGAG 896
|| ||| ||||||||||||||||||||||||||||||||| |||||| |||||||| ||
Sbjct 820 AC-TTGGCTCAAGGGAAGAAATTTTGATATCATACAACAATATTGTGGAATCATTTTGAT 878
Query 897 TTTTATACATTAGAGTTATGTTTATATTGA 926
||||||||||||||||| |||||| |||||
Sbjct 879 TTTTATACATTAGAGTTGTGTTTAAATTGA 908
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36102402399
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5