BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G60010.1
Length=965
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475309 jgi|Araly1|475309|fgenesh2_kg.2__439__AT1G60010.1 1441 0.0
> Ahg475309 jgi|Araly1|475309|fgenesh2_kg.2__439__AT1G60010.1
Length=942
Score = 1441 bits (780), Expect = 0.0
Identities = 891/944 (94%), Gaps = 9/944 (1%)
Strand=Plus/Plus
Query 1 AACTCTTCACGCTGTCCCGAAAAAGActcttctcttctctcttcctctttccttcacaca 60
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 1 AACTCTTCACGCTGTCCCGAAAGAGACTCTTCTCTTCTCTCTTCCTCTTTCTTTCACACA 60
Query 61 actctctcattctactctctG--ttttttttCTTTAATCATAACAtttttttGAAGAACA 118
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 61 ACTCTCTCATTCTACTCTCTGTTTTTTTTTTCTTTAATCATAACATTTTTTTGAAGAACA 120
Query 119 GAGATTCTTTTTGTTTGTGTAAGAGATGGGAAATTGTCAAGCGGTTGATGCGGCTGCGTT 178
|||||| ||||||| ||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 121 GAGATT-TTTTTGTGTGTGTAAGAGATGGGCAATTGTCAAGCGGTTGATGCGGCGGCGTT 179
Query 179 GGTTCTACAACATCCTGATGGCAAGATCGATAGATATTACGGTCCTGTATCCGTTAGTGA 238
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GGTTCTACAACATCCTGACGGCAAGATCGATAGATATTACGGTCCTGTATCCGTTAGTGA 239
Query 239 GATCATGCGTATGTATCCTGGTCACTACGTTTCTCTTATTATTCCTTTGCCGGAGAAGAA 298
|||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||
Sbjct 240 GATCATGCGTATGTATCCTGGTCACTACGTTTCTCTTATTATCCCTTTACCAGAGAAGAA 299
Query 299 TATTCCGGCGACAACAACAACAACAGATGATAAGAGTGAGAGAAAGGTTGTGAGGTTCAC 358
||||||| |||| || || || || ||||| |||| || |||| |||||||||||||||
Sbjct 300 TATTCCGACGACGACGACGACGACGGATGAGAAGACCGAAAGAAGGGTTGTGAGGTTCAC 359
Query 359 GCGCGTGAAACTTCTCCGACCAACGGAGAATCTTGTACTTGGTCATGCTTATCGTCTCAT 418
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 360 GCGCGTGAAACTTCTCCGACCAACGGAGAGTCTTGTACTTGGTCATGCTTATCGTCTCAT 419
Query 419 CACTTCACAAGAGGTTATGAAGGTTTTAAGAGCCAAGAAGTACGCGAAAACAAAGAAACA 478
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 420 AACTTCACAAGAGGTTATGAAGGTTTTAAGAGCCAAGAAGTATGCGAAAACAAAGAAACA 479
Query 479 CCAAAGTGAAACGAGTAAGGAGAAGAAGAAGCCATCATCGGAGAAGAAGATTGATGAAGA 538
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 480 TCAAAGTGAAACGAGTAAGGAGAAGAAGAAGCCATCCCCGGAGAAGAAGATTGATGAAGA 539
Query 539 ATCCGACAAGAATCAGAATCTGGAAACGAAAGATGAGAAGCAACGTTCAGTGTTAACGAA 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 ATCCGACAAGAATCAGAATCTGGAAACGAAAGATGAGAAGCAACGTTCAGTGTTAACGAA 599
Query 599 TTCAGCTTCATCGAGATCAAAAACATGGAGGCCATCATTGCAGAGCATCTCTGAAGCTAC 658
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TTCGGCTTCATCGAGATCAAAAACATGGAGGCCATCATTGCAGAGCATCTCTGAAGCTAC 659
Query 659 GAGTTGATGTTTGGGTTTTA-CGTGAGGGACAAGAAACGTAGTCTCTGTGTGTGAATCAT 717
||||||||||||| ||||| ||||||||||||||||| ||||||||||||| || |||
Sbjct 660 GAGTTGATGTTTGATTTTTAGCGTGAGGGACAAGAAACATAGTCTCTGTGTGAGA-TCAA 718
Query 718 TCAGAAGATGGAATCTGAAGAAGAAAGAGATATAAACATTATTGAATAAACTCTTCTCTT 777
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 719 TCAGAAGATGGAATCTGAAGAAGAAAGAGAGATAAACATTATTGAATAAACTCTTCTCTT 778
Query 778 ATGTTCCTTTCTGGTTATAATTTACATAGGAGATGAAAATTTTATAGATTAAGATGTAAA 837
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 779 ATGTTCCTTTCTGGTTATTATTTACATAGGAGATGAAAATTTTATAGATTAAGATGTAAA 838
Query 838 AAGAA--CTATGCAGAGATTAAGAACTAAGTCCCTTTTTT-GTCCTGTTAATGTATATAT 894
|| || || |||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 839 AAAAAAACTCTGCAGAGATTAAGAACTAAGTCCCTTTTTTTGTCCTGTCAATGTATATAT 898
Query 895 GTGCTCCATGTGAAGAAATCAATC-AAAAAATAGATTGTAAAAA 937
|| | ||||||||| ||||||| |||||| ||| ||||||||
Sbjct 899 GTTCAACATGTGAAGCAATCAATGGAAAAAAAAGAGTGTAAAAA 942
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35835541980
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5