BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G60030.1 Length=1966 Score E Sequences producing significant alignments: (Bits) Value Ahg925053 jgi|Araly1|925053|scaffold_200614.1 2584 0.0 > Ahg925053 jgi|Araly1|925053|scaffold_200614.1 Length=1654 Score = 2584 bits (1399), Expect = 0.0 Identities = 1573/1658 (95%), Gaps = 7/1658 (0%) Strand=Plus/Plus Query 178 TTCATCAGAAGTTAAAGGAAATGGCCGGTGGTGGTGGAGGAGGAGGAGGGGTAGCGCCGC 237 |||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||| Sbjct 1 TTCATCAGAAGTGAAAGGAAATGGCCGGTGGTGGT---GGAGGAGGAGGGATAGCGCCGC 57 Query 238 CGCTAAAACATGATGGGCTTGAGCCACATCCGGTGAAAGATCAACTTTCTTCTATCTCTT 297 |||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||| Sbjct 58 CGCTAAAACAAGATGAGCTTGAGCCACATCCCGTGAAAGATCAACTTTCTTCTATCTCTT 117 Query 298 ATTGCATCACAAGTCCTCCTCCTTGGCCGGAGGCAATACTTTTGGGGTTTCAGCATTACT 357 ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct 118 ATTGCATCACAAGTCCTCCTCCTTGGCCGGAGGCAATACTTTTAGGTTTTCAGCATTACT 177 Query 358 TAGTGATGCTTGGAACAACTGTTCTCATCCCAACATATTTAGTTCCACAGATGGGTGGTG 417 | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 178 TGGTGATGCTTGGAACAACTGTTCTCATTCCAACATATTTAGTTCCACAGATGGGTGGTG 237 Query 418 GAAATGAAGAGAAGGCAAAGATGGTTCAGACATTACTTTTTGTTTCTGGACTTAATACTT 477 |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| Sbjct 238 GAAATGAAGAGAAGGCAAAGATGGTTCAGACATTGCTTTTTGTTTCTGGACTTAACACTT 297 Query 478 TATTGCAAAGTTTCTTTGGGACTAGACTTCCAGCGGTCATTGGAGGCTCTTACACCTATG 537 |||||||||| |||||||||||| ||||||| |||||||||||||||||||| |||||| Sbjct 298 TATTGCAAAGCTTCTTTGGGACTCGACTTCCCGCGGTCATTGGAGGCTCTTATACCTATT 357 Query 538 TACCAACCACGCTTTCCATCATCTTGGCTGGTCGGTACAGCGACATT-TTGGATCCTCAG 596 |||||||||| ||||| ||||| ||||||||||||||||| |||||| || ||||||||| Sbjct 358 TACCAACCACTCTTTCGATCATTTTGGCTGGTCGGTACAGTGACATTCTT-GATCCTCAG 416 Query 597 GAGAAATTTAAGAGGATCATGCGAGGAATCCAGGGTGCTCTTATCGTTGCCTCGATTCTT 656 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 417 GAGAAATTTAAGAGGATAATGCGAGGAATCCAGGGTGCTCTTATCGTTGCCTCGATTCTT 476 Query 657 CAGATCGTTGTTGGCTTCAGCGGGCTTTGGCGCAATGTAGTTAGGCTCCTGAGTCCTCTC 716 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 477 CAGATCGTTGTTGGCTTCAGCGGGCTTTGGCGCAATGTAGTTAGGCTCTTGAGTCCTCTC 536 Query 717 TCTGCAGTTCCTCTAGTAGCACTAGCTGGTTTTGGACTTTATGAGCACGGTTTCCCTCTG 776 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 537 TCTGCAGTTCCTCTAGTAGCACTAGCCGGTTTTGGACTTTATGAGCACGGTTTCCCTCTG 596 Query 777 CTAGCCAAATGCATCGAGATTGGACTGCCTGAGATCATCCTTCTACTCT-TATTCTCACA 835 |||||||||||||| ||||||||||||||||| |||||||||||||| | |||||||||| Sbjct 597 CTAGCCAAATGCATTGAGATTGGACTGCCTGAAATCATCCTTCTACT-TATATTCTCACA 655 Query 836 GTACATTCCTCATCTCATTCGAGGAGAAAGACAAGTCTTCCATCGATTTGCTGTGATTTT 895 ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 656 GTACATTCCTCATCTCATTCGAGGAGAAAGACAAGTCTTTCATCGATTTGCTGTTATTTT 715 Query 896 CTCTGTGGTTATTGTCTGGATTTACGCGCATCTACTTACCGTTGGTGGAGCCTATAAGAA 955 |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 716 CTCTGTGGTTATCGTCTGGATTTACGCACATCTACTTACCGTTGGTGGAGCCTATAAGAA 775 Query 956 CACAGGAGTCAACACTCAGACAAGTTGTAGAACAGATCGTTCTGGCCTTATTAGCGGCTC 1015 ||||||| ||||||||||||||||||| |||||||||||||| ||||||||| | ||| | Sbjct 776 CACAGGAATCAACACTCAGACAAGTTGCAGAACAGATCGTTCCGGCCTTATTGGAGGCGC 835 Query 1016 TCCATGGATAAGAGTTCCTTACCCTTTTCAATGGGGACCTCCAACATTTCATGCCGGTGA 1075 ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 836 TCCATGGATAAGAGTGCCTTATCCTTTTCAATGGGGACCTCCAACATTTCATGCCGGTGA 895 Query 1076 AGCTTTCGCTATGATGGCTGTTTCATTTGTTTCCCTAATTGAGTCCACAGGGACTTACAT 1135 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 896 AGCTTTCGCTATGATGGCTGTTTCATTTGTTTCCCTTATTGAGTCCACAGGGACTTACAT 955 Query 1136 TGTTGTGTCGAGGTTCGCAAGCGCAACTCCGCCCCCGCCTTCCGTTCTCAGCCGTGGGGT 1195 ||||||||| ||||| |||||||||||||| || || ||||| ||||| |||||||| | Sbjct 956 TGTTGTGTCAAGGTTTGCAAGCGCAACTCCACCGCCACCTTCTGTTCTTAGCCGTGGAAT 1015 Query 1196 TGGTTGGCAGGGTGTAGGAGTTCTTCTCTGTGGACTATTTGGAGCAGGAAATGGAGCATC 1255 ||||||||||| || ||||| |||||||||||| ||||||||||||||||||||||||| Sbjct 1016 CGGTTGGCAGGGCGTTGGAGTACTTCTCTGTGGATTATTTGGAGCAGGAAATGGAGCATC 1075 Query 1256 TGTGTCAGTAGAAAATGCCGGTTTGTTAGCGCTAACACGCGTTGGTAGTAGAAGGGTAGT 1315 ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1076 TGTATCAGTAGAAAATGCCGGTTTGTTAGCGCTAACACGCGTTGGTAGCAGAAGGGTAGT 1135 Query 1316 TCAAATATCAGCCGGTTTTATGATTTTCTTTTCCATTCTTGGTAAATTTGGAGCTATCTT 1375 |||||||||||| ||||| ||||||||||| |||||||||||||||||||| || ||||| Sbjct 1136 TCAAATATCAGCTGGTTTCATGATTTTCTTCTCCATTCTTGGTAAATTTGGGGCCATCTT 1195 Query 1376 TGCTTCGATTCCAGCTCCAGTAGTCGCAGCATTACATTGCTTGTTTTTTGCATACGTTGG 1435 |||||||||||| |||||| | ||||||||||||||||||||||| |||||||||||||| Sbjct 1196 TGCTTCGATTCCCGCTCCAATCGTCGCAGCATTACATTGCTTGTTCTTTGCATACGTTGG 1255 Query 1436 TGCTGGTGGTCTAAGCTTACTTCAGTTCTGTAATCTAAACAGCTTCAGAACAAAATTCAT 1495 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1256 TGCTGGTGGTCTAAGCTTACTTCAGTTCTGTAATCTAAACAGCTTCAGAACAAAATTCAT 1315 Query 1496 CCTCGGATTCTCGGTCTTCATGGGCTTATCGATACCACAGTACTTCAACCAGTATACAGC 1555 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1316 CCTCGGATTCTCGGTCTTCATGGGCTTATCGATACCACAGTACTTCAACGAGTATACAGC 1375 Query 1556 TGTTAACAAGTATGGACCAGTTCACACACACGCAAGATGGTTCAATGATATGATCAATGT 1615 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1376 TGTTAACAAGTATGGACCAGTTCACACACACGCAAGATGGTTCAATGATATGATCAATGT 1435 Query 1616 TCCATTCTCTTCTAAAGCCTTTGTGGCTGGGATTTTGGCATTCTTTCTTGATGTAACAAT 1675 |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| | Sbjct 1436 ACCATTCTCCTCTAAAGCATTTGTGGCTGGGATTTTGGCATTCTTTCTTGATGTAACATT 1495 Query 1676 GTCATCTAAAGACAGTGCGACGAGGAAAGACCGAGGGATGTTTTGGTGGGATCGATTCAT 1735 |||||||||||||||||| || |||||||||||||||||||||||||||||||| || || Sbjct 1496 GTCATCTAAAGACAGTGCCACAAGGAAAGACCGAGGGATGTTTTGGTGGGATCGTTTTAT 1555 Query 1736 GTCGTTCAAATCAGATACTAGAAGTGAAGAGTTTTACTCTTTGCCTTTCAATCTCAACAA 1795 ||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1556 GTCTTTTAAATCGGATACTAGAAGTGAAGAGTTTTACTCTTTGCCTTTCAATCTCAACAA 1615 Query 1796 GTATTTTCCCTCTGTGTGATCAATGAAAATTATGCTGA 1833 ||||||||||||||||| | || ||||||||||||||| Sbjct 1616 GTATTTTCCCTCTGTGTAAACATTGAAAATTATGCTGA 1653 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 73895075300 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5