BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G60030.1
Length=1966
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925053 jgi|Araly1|925053|scaffold_200614.1 2584 0.0
> Ahg925053 jgi|Araly1|925053|scaffold_200614.1
Length=1654
Score = 2584 bits (1399), Expect = 0.0
Identities = 1573/1658 (95%), Gaps = 7/1658 (0%)
Strand=Plus/Plus
Query 178 TTCATCAGAAGTTAAAGGAAATGGCCGGTGGTGGTGGAGGAGGAGGAGGGGTAGCGCCGC 237
|||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 1 TTCATCAGAAGTGAAAGGAAATGGCCGGTGGTGGT---GGAGGAGGAGGGATAGCGCCGC 57
Query 238 CGCTAAAACATGATGGGCTTGAGCCACATCCGGTGAAAGATCAACTTTCTTCTATCTCTT 297
|||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 58 CGCTAAAACAAGATGAGCTTGAGCCACATCCCGTGAAAGATCAACTTTCTTCTATCTCTT 117
Query 298 ATTGCATCACAAGTCCTCCTCCTTGGCCGGAGGCAATACTTTTGGGGTTTCAGCATTACT 357
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 118 ATTGCATCACAAGTCCTCCTCCTTGGCCGGAGGCAATACTTTTAGGTTTTCAGCATTACT 177
Query 358 TAGTGATGCTTGGAACAACTGTTCTCATCCCAACATATTTAGTTCCACAGATGGGTGGTG 417
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 178 TGGTGATGCTTGGAACAACTGTTCTCATTCCAACATATTTAGTTCCACAGATGGGTGGTG 237
Query 418 GAAATGAAGAGAAGGCAAAGATGGTTCAGACATTACTTTTTGTTTCTGGACTTAATACTT 477
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 238 GAAATGAAGAGAAGGCAAAGATGGTTCAGACATTGCTTTTTGTTTCTGGACTTAACACTT 297
Query 478 TATTGCAAAGTTTCTTTGGGACTAGACTTCCAGCGGTCATTGGAGGCTCTTACACCTATG 537
|||||||||| |||||||||||| ||||||| |||||||||||||||||||| ||||||
Sbjct 298 TATTGCAAAGCTTCTTTGGGACTCGACTTCCCGCGGTCATTGGAGGCTCTTATACCTATT 357
Query 538 TACCAACCACGCTTTCCATCATCTTGGCTGGTCGGTACAGCGACATT-TTGGATCCTCAG 596
|||||||||| ||||| ||||| ||||||||||||||||| |||||| || |||||||||
Sbjct 358 TACCAACCACTCTTTCGATCATTTTGGCTGGTCGGTACAGTGACATTCTT-GATCCTCAG 416
Query 597 GAGAAATTTAAGAGGATCATGCGAGGAATCCAGGGTGCTCTTATCGTTGCCTCGATTCTT 656
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 GAGAAATTTAAGAGGATAATGCGAGGAATCCAGGGTGCTCTTATCGTTGCCTCGATTCTT 476
Query 657 CAGATCGTTGTTGGCTTCAGCGGGCTTTGGCGCAATGTAGTTAGGCTCCTGAGTCCTCTC 716
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 477 CAGATCGTTGTTGGCTTCAGCGGGCTTTGGCGCAATGTAGTTAGGCTCTTGAGTCCTCTC 536
Query 717 TCTGCAGTTCCTCTAGTAGCACTAGCTGGTTTTGGACTTTATGAGCACGGTTTCCCTCTG 776
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 537 TCTGCAGTTCCTCTAGTAGCACTAGCCGGTTTTGGACTTTATGAGCACGGTTTCCCTCTG 596
Query 777 CTAGCCAAATGCATCGAGATTGGACTGCCTGAGATCATCCTTCTACTCT-TATTCTCACA 835
|||||||||||||| ||||||||||||||||| |||||||||||||| | ||||||||||
Sbjct 597 CTAGCCAAATGCATTGAGATTGGACTGCCTGAAATCATCCTTCTACT-TATATTCTCACA 655
Query 836 GTACATTCCTCATCTCATTCGAGGAGAAAGACAAGTCTTCCATCGATTTGCTGTGATTTT 895
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 656 GTACATTCCTCATCTCATTCGAGGAGAAAGACAAGTCTTTCATCGATTTGCTGTTATTTT 715
Query 896 CTCTGTGGTTATTGTCTGGATTTACGCGCATCTACTTACCGTTGGTGGAGCCTATAAGAA 955
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 716 CTCTGTGGTTATCGTCTGGATTTACGCACATCTACTTACCGTTGGTGGAGCCTATAAGAA 775
Query 956 CACAGGAGTCAACACTCAGACAAGTTGTAGAACAGATCGTTCTGGCCTTATTAGCGGCTC 1015
||||||| ||||||||||||||||||| |||||||||||||| ||||||||| | ||| |
Sbjct 776 CACAGGAATCAACACTCAGACAAGTTGCAGAACAGATCGTTCCGGCCTTATTGGAGGCGC 835
Query 1016 TCCATGGATAAGAGTTCCTTACCCTTTTCAATGGGGACCTCCAACATTTCATGCCGGTGA 1075
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 836 TCCATGGATAAGAGTGCCTTATCCTTTTCAATGGGGACCTCCAACATTTCATGCCGGTGA 895
Query 1076 AGCTTTCGCTATGATGGCTGTTTCATTTGTTTCCCTAATTGAGTCCACAGGGACTTACAT 1135
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 896 AGCTTTCGCTATGATGGCTGTTTCATTTGTTTCCCTTATTGAGTCCACAGGGACTTACAT 955
Query 1136 TGTTGTGTCGAGGTTCGCAAGCGCAACTCCGCCCCCGCCTTCCGTTCTCAGCCGTGGGGT 1195
||||||||| ||||| |||||||||||||| || || ||||| ||||| |||||||| |
Sbjct 956 TGTTGTGTCAAGGTTTGCAAGCGCAACTCCACCGCCACCTTCTGTTCTTAGCCGTGGAAT 1015
Query 1196 TGGTTGGCAGGGTGTAGGAGTTCTTCTCTGTGGACTATTTGGAGCAGGAAATGGAGCATC 1255
||||||||||| || ||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 1016 CGGTTGGCAGGGCGTTGGAGTACTTCTCTGTGGATTATTTGGAGCAGGAAATGGAGCATC 1075
Query 1256 TGTGTCAGTAGAAAATGCCGGTTTGTTAGCGCTAACACGCGTTGGTAGTAGAAGGGTAGT 1315
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1076 TGTATCAGTAGAAAATGCCGGTTTGTTAGCGCTAACACGCGTTGGTAGCAGAAGGGTAGT 1135
Query 1316 TCAAATATCAGCCGGTTTTATGATTTTCTTTTCCATTCTTGGTAAATTTGGAGCTATCTT 1375
|||||||||||| ||||| ||||||||||| |||||||||||||||||||| || |||||
Sbjct 1136 TCAAATATCAGCTGGTTTCATGATTTTCTTCTCCATTCTTGGTAAATTTGGGGCCATCTT 1195
Query 1376 TGCTTCGATTCCAGCTCCAGTAGTCGCAGCATTACATTGCTTGTTTTTTGCATACGTTGG 1435
|||||||||||| |||||| | ||||||||||||||||||||||| ||||||||||||||
Sbjct 1196 TGCTTCGATTCCCGCTCCAATCGTCGCAGCATTACATTGCTTGTTCTTTGCATACGTTGG 1255
Query 1436 TGCTGGTGGTCTAAGCTTACTTCAGTTCTGTAATCTAAACAGCTTCAGAACAAAATTCAT 1495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 TGCTGGTGGTCTAAGCTTACTTCAGTTCTGTAATCTAAACAGCTTCAGAACAAAATTCAT 1315
Query 1496 CCTCGGATTCTCGGTCTTCATGGGCTTATCGATACCACAGTACTTCAACCAGTATACAGC 1555
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1316 CCTCGGATTCTCGGTCTTCATGGGCTTATCGATACCACAGTACTTCAACGAGTATACAGC 1375
Query 1556 TGTTAACAAGTATGGACCAGTTCACACACACGCAAGATGGTTCAATGATATGATCAATGT 1615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 TGTTAACAAGTATGGACCAGTTCACACACACGCAAGATGGTTCAATGATATGATCAATGT 1435
Query 1616 TCCATTCTCTTCTAAAGCCTTTGTGGCTGGGATTTTGGCATTCTTTCTTGATGTAACAAT 1675
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 1436 ACCATTCTCCTCTAAAGCATTTGTGGCTGGGATTTTGGCATTCTTTCTTGATGTAACATT 1495
Query 1676 GTCATCTAAAGACAGTGCGACGAGGAAAGACCGAGGGATGTTTTGGTGGGATCGATTCAT 1735
|||||||||||||||||| || |||||||||||||||||||||||||||||||| || ||
Sbjct 1496 GTCATCTAAAGACAGTGCCACAAGGAAAGACCGAGGGATGTTTTGGTGGGATCGTTTTAT 1555
Query 1736 GTCGTTCAAATCAGATACTAGAAGTGAAGAGTTTTACTCTTTGCCTTTCAATCTCAACAA 1795
||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1556 GTCTTTTAAATCGGATACTAGAAGTGAAGAGTTTTACTCTTTGCCTTTCAATCTCAACAA 1615
Query 1796 GTATTTTCCCTCTGTGTGATCAATGAAAATTATGCTGA 1833
||||||||||||||||| | || |||||||||||||||
Sbjct 1616 GTATTTTCCCTCTGTGTAAACATTGAAAATTATGCTGA 1653
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73895075300
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5