BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G60040.1
Length=855
Score E
Sequences producing significant alignments: (Bits) Value
Ahg338390 jgi|Araly1|338390|fgenesh1_pg.C_scaffold_2000489 411 6e-114
Ahg925084 jgi|Araly1|925084|scaffold_200645.1 383 1e-105
> Ahg338390 jgi|Araly1|338390|fgenesh1_pg.C_scaffold_2000489
Length=642
Score = 411 bits (222), Expect = 6e-114
Identities = 346/403 (86%), Gaps = 19/403 (5%)
Strand=Plus/Plus
Query 1 ATGGCTCCTCGTCAGAAGAAACCTAACAAGTCCGATGATGATGATGGTGATTTGCATA-G 59
|||||||||||| | |||||||||||||||||| || ||||||| ||||||||| | |
Sbjct 1 ATGGCTCCTCGTGATAAGAAACCTAACAAGTCC--TG-CGATGATGATGATTTGCAGAGG 57
Query 60 --GAAGAAACAGAGCTTTTTCAAACAGAGATTTCCAGGCTTTAAGAAGAAAGCCTCAGAG 117
||||||||||| |||||||||||||||||||| || |||||||||||||| |||||
Sbjct 58 AAGAAGAAACAGAATTTTTTCAAACAGAGATTTCCTGGTTTTAAGAAGAAAGCAACAGAG 117
Query 118 CTCTCTGTTCTCTGCGGCAACTCTGTCGGTTTCATCTGTTACGGTCCCGACAACGATCTC 177
|| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 118 CTTTCTGTTCTCTGCGGTAACTCTGTTGGTTTCATCTGTTACGGTCCCGACAACGATCTC 177
Query 178 CATGTTTGGCCTCAGTCTCAAGATCATAACCCACAAGCCCTA-CATGAGATCGTGGCCAA 236
|||||||||||||| |||||||||||||||||||| ||||| || | |||||||||||
Sbjct 178 CATGTTTGGCCTCAACCTCAAGATCATAACCCACAAACCCTAACACAA-ATCGTGGCCAA 236
Query 237 GTTCAATGCCTTGAGTGATGAGAGGAGGAAGAATCATGCATGTGATCTCAATGACTTCCC 296
||||||||| ||||||||| | | ||||||| |||| || || |||||| | ||||||||
Sbjct 237 GTTCAATGCGTTGAGTGATCACAAGAGGAAGCATCACGCCTGCGATCTCTACGACTTCCC 296
Query 297 TCATCATCTCAAGGGTTTGTCTCGTGAGG--AGTTAAGGAAGCATCTCCTTCACCTTGAC 354
| | |||||||||||||||| || ||| |||| ||||| |||||| || ||||||||
Sbjct 297 T-A--ATCTCAAGGGTTTGTC-CG-GAGACCAGTTGAGGAACCATCTCGTTAACCTTGAC 351
Query 355 TCTCAATT-ACTTGGAGTCAGGGAACAAAAGATAGAAATTCTT 396
||||| || | ||||||||| | |||| |||||| || |||||
Sbjct 352 TCTCACTTGA-TTGGAGTCAAGCAACACAAGATA-AA-TTCTT 391
> Ahg925084 jgi|Araly1|925084|scaffold_200645.1
Length=941
Score = 383 bits (207), Expect = 1e-105
Identities = 336/396 (85%), Gaps = 18/396 (5%)
Strand=Plus/Plus
Query 1 ATGGCTCCTCGTCAGAAGAAACCTAACAAGTCCGATGAT--GATGATGGTGATTTGCATA 58
|||||||||||| | || ||||| ||||||||| | | || |||| ||||||||| |
Sbjct 22 ATGGCTCCTCGTGATAAAAAACCAAACAAGTCC--TCCTCGGAAGATGATGATTTGCAGA 79
Query 59 -G--GAAGAAACAGAGCTTTTTCAAACAGAGATTTCCAGGCTTT-AAGAAGAAAGCCT-C 113
| ||||||||||||||||||||||||||||||||| || ||| |||||||||| || |
Sbjct 80 GGAAGAAGAAACAGAGCTTTTTCAAACAGAGATTTCCTGG-TTTAAAGAAGAAAG-CTAC 137
Query 114 AGAGCTCTCTGTTCTCTGCGGCAACTCTGTCGGTTTCATCTGTTACGGTCCCGACAACGA 173
||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 138 AGAGCTCTCTGTTCTTTGCGGTAACTCTGTTGGTTTCATCTGTTACGGTCCCGACAACGA 197
Query 174 TCTCCATGTTTGGCCTCAGTCTCAAGATCATAACCCACAAGCCCTA-CATGAGATCGTGG 232
||||||||||||||||||| |||| ||||||||||||||| ||||| || |||||||||
Sbjct 198 TCTCCATGTTTGGCCTCAGCCTCATGATCATAACCCACAAACCCTAACAC-AGATCGTGG 256
Query 233 CCAAGTTCAATGCCTTGAGTGATGAGAGGAGGAAGAATCATGCATGTGATCTCAATGACT 292
||||||||||||| ||||||||| | | ||||| | || | || || |||||| | ||||
Sbjct 257 CCAAGTTCAATGCGTTGAGTGATAACAAGAGGATGCATAACGCCTGCGATCTCTACGACT 316
Query 293 TCCCTCATCATCTCAAGGGTTTGTCTCG-TGAGGAGTTAAGGAAGCATCTCCTTCACCTT 351
||||| | ||||||||||||| || || ||| ||||| ||||| |||||| || |||||
Sbjct 317 TCCCT-A--ATCTCAAGGGTTTATC-CGGTGACGAGTTGAGGAACCATCTCGTTAACCTT 372
Query 352 GACTCTCAATTACTTGGAGTCAGGGAACAAAAGATA 387
|||||||| ||| | || |||| | |||| ||||||
Sbjct 373 GACTCTCACTTAGTCGGGGTCAAGCAACACAAGATA 408
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31642021110
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5