BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G60050.1
Length=1125
Score E
Sequences producing significant alignments: (Bits) Value
Ahg315326 jgi|Araly1|315326|fgenesh1_pm.C_scaffold_2000359 1869 0.0
> Ahg315326 jgi|Araly1|315326|fgenesh1_pm.C_scaffold_2000359
Length=1122
Score = 1869 bits (1012), Expect = 0.0
Identities = 1088/1125 (97%), Gaps = 3/1125 (0%)
Strand=Plus/Plus
Query 1 ATGGGATTAATGGATACAAGATGGGAAACCATAGTTCCATTTATTGTTATGGCGTTGATG 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 ATGGGATTAATGGATACAAGATGGGAAACCATAGTTCCATTTACTGTTATGGCGTTGATG 60
Query 61 GAGGCATGTACCATTGCACTCACCATCTTGGCTAAGACCGCACTGACCGGTGGCATGAGC 120
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 61 GAGGCATGTACCATTGCACTCACCATCTTGGCTAAGACCTCACTGACTGGTGGCATGAGC 120
Query 121 CCTTTCGTGTTCATCGTCTACACCAACGCTCTTGGCTCTCTCCTTCTCCTCCCTTACTCT 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCTTTTGTGTTCATCGTCTACACCAACGCTCTTGGCTCTCTCCTTCTCCTCCCTTACTCT 180
Query 181 TTCTACTTCCATAGAGATGAAAGTGACGATGAACCCTTCCTCACGAAACCTTCCCTTGTT 240
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 181 TTCTACTTCCATAGAGATGAAAGCGACGATGAACCCTTCCTCACGAAACCTTCCCTTGTT 240
Query 241 CGTATCTTCCTACTCGGTTTTACAGGGGTGTTTTTGTTCCAGAACATGGCATTTTTGGGG 300
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 241 CGAATCTTCCTACTCGGTTTTACAGGGGTGTTTTTGTTCCAAAACATGGCATTTTTGGGG 300
Query 301 CTAAGTTATAGCTCTCCAATTGTGGTATGTGCCATGGGCTTGCAGTCACCTGCTTTCTCC 360
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 301 CTAAGTTATAGCTCTCCAATTGTGGTATGTGCCATGGGCTTGCAATCACCTGCTTTCTCC 360
Query 361 TTCTTGCTATCTCTTGCTCTTGGTAAGGAAGGAGGGTTAGGATGGGCAAGTAAGAGAACA 420
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 361 TTCTTGCTATCTCTTGCTCGCGG---GGAAGGAGGGTTAGGATGGGCAAGTAAGAGAACA 417
Query 421 AAAGGAAGAGTGATAGGCACGTTGATATGTTTCACAGGAGCCTTTGTTGAAGTTATTTAC 480
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 418 AAAGGAAGAGTGATAGGCACGTTGATATGCTTCACAGGAGCCTTTGTTGAAGTTATTTAC 477
Query 481 TTAGGACCTTTTATAAGACCTTCTCCTCCTTCATCCCCAACCTCCAATTTCCTTACTACA 540
||||| ||||||||||||||||||| |||||||||||||| ||||||||||||| |||||
Sbjct 478 TTAGGCCCTTTTATAAGACCTTCTCATCCTTCATCCCCAAACTCCAATTTCCTTGCTACA 537
Query 541 ATCTCACACTACTTAACTTTCTTCAAAAATTCTGACAATTGGGCTCTCGGCTCTCTCCTC 600
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 538 ATCTCACACTATTTAACTTTCTTCAAAAATTCTGACAATTGGGTTCTCGGCTCTCTCCTC 597
Query 601 CTTGCATGCGCCACGCTCTCCATCTCCATTTGGAATATTATACAGTTGGATACAGTCCAA 660
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 598 CTCGCATGCGCCACGCTCTCAATCTCCATTTGGAATATTATACAGTTGGATACAGTCCAA 657
Query 661 AAATATCCTCAAGTGATGAAAGTAGTGTCTGCCTATAGTTTAGCTGGGACACTCCAATGT 720
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 658 AAATATCCTCAAGTGATGAAAGTAGTGTCTGCCTATAGCTTAGCTGGGACACTCCAATGT 717
Query 721 GCAATCTTCTCAGCGTTCATGGAGCCAGACCTAAGTGCATGGGAACTCAAACTTAACATG 780
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 718 GCAATCTTCTCAGCGTTCATGGAGCCAGACCTAAGTGCATGGAAACTCAAACTTAACATG 777
Query 781 GACCTATATCTCATTATTGCCACGGGAATATTTGGGAGCATAATCAGAACAAGTGTTCAA 840
||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 778 GACTTATATCTCATTATCGCCACGGGGATATTTGGGAGCATAATCAGAACAAGTGTTCAA 837
Query 841 GTGAAGTGCTCCAAAATGAAGGGGCCTTATTATGTGCCACTCTTCAAGCCATTTGGGATC 900
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 838 GTGAAGTGCTCAAAAATGAAGGGGCCTTATTATGTGCCACTCTTTAAGCCATTTGGGATC 897
Query 901 CTTTGGGCTTCCATTTTTGGCACAAGCTTCTTTGTCAATAGTCTTCACTATGGAAGTGTG 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 CTTTGGGCTTCCATTTTTGGCACAAGCTTCTTTGTCAATAGTCTTCACTATGGAAGTGTG 957
Query 961 TTAGGAGCTGCTATAGCAGGAACTGGATATCTATTGATAATGTGGAGTCAAGTTCAAAAA 1020
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 TTAGGAGCTGCAATAGCAGGAACTGGATATCTATTGATAATGTGGAGTCAAGTTCAAAAA 1017
Query 1021 GATGATCCAAATGAAACGGTGGAGAAAAACGATAATCATCAATTGGATTCAGATGAACAG 1080
|| |||| ||| |||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 GAAGATCAAAACGAAATGGCGGAGAAAAACGATAATCATCAATTGGATTCAGATGAACAG 1077
Query 1081 ACAACTCCACTTTTGCTCGCGAATGGTGATTTTGATCAAGTTTAA 1125
||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 1078 ACAACTCCACTTTTGCTCGCGAATGATGATTTTGATCAAGTATAA 1122
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41935208700
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5