BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G60060.1
Length=1464
Score E
Sequences producing significant alignments: (Bits) Value
Ahg315325 jgi|Araly1|315325|fgenesh1_pm.C_scaffold_2000358 1790 0.0
> Ahg315325 jgi|Araly1|315325|fgenesh1_pm.C_scaffold_2000358
Length=1146
Score = 1790 bits (969), Expect = 0.0
Identities = 1071/1119 (96%), Gaps = 11/1119 (1%)
Strand=Plus/Plus
Query 99 ATGGAAGAACATCTAAATCCATTAGCAGTGACTCATCTTCTTCAACACACACTAAGAAGC 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAAGAACATCTAAATCCATTAGCAGTGACTCATCTTCTTCAACACACACTAAGAAGC 60
Query 159 TTATGCATCCATGAGAACTCTCAATGGGTTTATGCTGTTTTCTGGAGGATCTTGCCTAGA 218
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 TTATGCATCCATGAGAATTCTCAATGGGTTTATGCTGTTTTCTGGAGGATCTTGCCCAGA 120
Query 219 AACTATCCTCCTCCCAAATGGGATGGTCAAGGAGCTTATGATAGATCAAGAGGGAACAGG 278
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 121 AACTATCCACCTCCCAAATGGGATGGTCAAGGAGCTTATGATAGATCAAGAGGTAACAGG 180
Query 279 AGAAACTGGATCTTGGTTTGGGAAGATGGTTTTTGCAACTTTGCAGCTTCTGCCGCGGAA 338
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 181 AGAAACTGGATCTTGGTTTGGGAAGATGGGTTTTGCAACTTTGCAGCTTCTGCCGCGGAA 240
Query 339 ATGAGCTCCGGAGAAG-GTAGTGGTGGCGGTGGTGGCTCAGCGGCTTATGGAAATAGTGA 397
||||||||||| | || ||||||| ||||| ||| ||||| ||| ||| |||||||||||
Sbjct 241 ATGAGCTCCGGCG-AGTGTAGTGGCGGCGGCGGTCGCTCAACGGGTTACGGAAATAGTGA 299
Query 398 TTTTCAACAATACCAAGGGCTTCAGCCTGAATTGTTCTTCAAGATGTCTCATGAAATCTA 457
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 300 TTTTCAACAATACCAAGGGCTTCAGCCTGAGTTGTTCTTCAAGATGTCTCATGAAATCTA 359
Query 458 CAATTATGGAGAAGGGTTGATAGGAAAAGTAGCTGCAGATCACAGTCACAAGTGGATTTA 517
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CAATTACGGAGAAGGGTTGATAGGAAAAGTAGCTGCAGATCACAGTCACAAGTGGATTTA 419
Query 518 TAAAGAACCTAATGACCAAGAGATTAACTTCTTATCTGCTTGGCATAATTCCGCTGACTC 577
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 420 TAAAGAACCTAATGACCAAGAGATTAACTTCTTATCTGCTTGGCACAATTCTGCTGACTC 479
Query 578 ATACCCTAGGACATGGGAAGCTCAGTTTCAGTCTGGTATCAAAACCATTGCCTTGATTTC 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 ATACCCTAGGACATGGGAAGCTCAGTTTCAGTCTGGTATCAAAACCATTGCCTTGATTTC 539
Query 638 TGTTCGAGAAGGTGTTGTCCAGTTAGGAGCTGTTCACAAGGTGATAGAGGATTTAAGCTA 697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TGTTCGAGAAGGTGTTGTCCAGTTAGGAGCTGTTCACAAGGTGATAGAGGATTTAAGCTA 599
Query 698 TGTTGTGATGCTAAGAAAAAAGCTGAGCTATATAGAGAGCATCCCTGGAGTACTTCTTCC 757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TGTTGTGATGCTAAGAAAAAAGCTGAGCTATATAGAGAGCATCCCTGGAGTACTTCTTCC 659
Query 758 TCACCCTTCTTCTTCTGGTTACCCTTTCATCAACGCTTCTCCTTCTGACACGTGGCATTT 817
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 660 TCATCCTTCTTCTTCCGGTTACCCTTTCATCAACGCTTCTCCTTCTGACACGTGGAATTT 719
Query 818 CCCGGGAGTCGCTCCTC--C-GCATCAGCAGCCTGAGCACCAGTTTTATCATTCTGACCA 874
||| ||||||||||||| | ||||||||||| ||| |||||||||||||| ||||||||
Sbjct 720 CCCAGGAGTCGCTCCTCTTCCGCATCAGCAGCATGAACACCAGTTTTATCACTCTGACCA 779
Query 875 CAACCACCGCTTTTTGATAGGCCACCACAACCAGCCACAAGC--T-GTAGGAGGGGCTGC 931
|||||||||||| ||||| ||||| ||||||||||||||||| | ||||||||||||||
Sbjct 780 CAACCACCGCTTCTTGATGGGCCATCACAACCAGCCACAAGCGGTAGTAGGAGGGGCTGC 839
Query 932 ACCGCCTCTACCGCTTTCGATGAAGATAACACCGTCAATGAGCAGCCTCGAGGCGCTTCT 991
|||||||||||| ||||||||||||||||| || |||||||| |||||||||||||||||
Sbjct 840 ACCGCCTCTACCACTTTCGATGAAGATAACGCCCTCAATGAGTAGCCTCGAGGCGCTTCT 899
Query 992 CTCGAAGCTCCCGTCGGTTGTACCTCCGGCGACACAACCAGGGTACTACCCGTTTCACCA 1051
||||||||| |||||||||||||||||||| || || || ||||||||||||||||||||
Sbjct 900 CTCGAAGCTTCCGTCGGTTGTACCTCCGGCAACGCAGCCGGGGTACTACCCGTTTCACCA 959
Query 1052 CAGTGCTAAAGAGGAAATGAGTCAAGAAGAACAAAACGATGCGTTTAGGGTTGAACGTAA 1111
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 CAGTGCTAAAGAAGAAATGAGTCAAGAAGAACAAAACGATGCGTTTAGGGTTGAACGTAA 1019
Query 1112 TGATTTGGTGGGTGAGGGTAGtaataatcataatcataataataattacaatagtaataa 1171
||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1020 TGATTTGGTGGGTGAGGGTAGTAATAATCATAATCATAATAAT--T-ACAATAGTAATAA 1076
Query 1172 tgatatttataactatagcaataattgcagcaacaataa 1210
|||||| ||||||||||||||||||||||||||||||||
Sbjct 1077 TGATATGTATAACTATAGCAATAATTGCAGCAACAATAA 1115
Score = 67.6 bits (36), Expect = 2e-10
Identities = 36/36 (100%), Gaps = 0/36 (0%)
Strand=Plus/Plus
Query 1224 AATAAGATCGGTGGGTTTCTTAGTGAGGATTATTGA 1259
||||||||||||||||||||||||||||||||||||
Sbjct 1111 AATAAGATCGGTGGGTTTCTTAGTGAGGATTATTGA 1146
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54773772310
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5