BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G60075.1 Length=1224 Score E Sequences producing significant alignments: (Bits) Value Ahg925049 jgi|Araly1|925049|scaffold_200610.1 1249 0.0 > Ahg925049 jgi|Araly1|925049|scaffold_200610.1 Length=1260 Score = 1249 bits (676), Expect = 0.0 Identities = 1071/1250 (86%), Gaps = 74/1250 (6%) Strand=Plus/Plus Query 1 ATGGATAGA-GTAGAGGAAGAGGCGGAAGATAGGGAAGTAAGTATACAATCTAAAGAAGA 59 ||||||||| | ||| |||||||||||||||| ||| |||||||||||||||||||||| Sbjct 26 ATGGATAGACG-AGAAGAAGAGGCGGAAGATAAAGAAATAAGTATACAATCTAAAGAAGA 84 Query 60 TGAGAGTTTTTGTAAGTTTCTCGAGATGATTCCTCTTGATCTAATTCCTGATATACTCTT 119 |||||||| | | |||||||||| |||||||||||||||||| |||| ||| |||||||| Sbjct 85 TGAGAGTTGTAGAAAGTTTCTCGTGATGATTCCTCTTGATCTGATTCATGAGATACTCTT 144 Query 120 GAGACTTCCTGCTAAATCTGCTGCGAGGTTCCACTGGGTCTCTTAGCTATGGTCATCAAT 179 |||||||||||||||||| | ||| | ||||| || || || ||||||||||||| || Sbjct 145 GAGACTTCCTGCTAAATCCGTTGCAAAGTTCCGTTGCGTATCAAAGCTATGGTCATCCAT 204 Query 180 CACCACTCATCCAGATTTCATCAGGTCGTTCGCGAGTCAGTCTTCAACTAGGTTGTGTCT 239 ||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||| Sbjct 205 AACCACTCGCCCAGATTTCATCAGGTCGTTCGTGAGTCAGTCTTCAACTCGGTTGTGTCT 264 Query 240 TTTGGTCTGCGTGAAAACAAGTGACAAGCGTATTTTCTGCGCAATGCCC-CAACATGAAA 298 ||| ||||||||||| ||||| ||| ||||| ||| |||| |||| ||| |||||||||| Sbjct 265 TTTCGTCTGCGTGAACACAAGGGACGAGCGTCTTTCCTGCTCAAT-CCCTCAACATGAAA 323 Query 299 ATCCGGACAGATCATGTTATCCACATGTGGAGCGTTATCTGAAAGACACTCTC-ATATTT 357 || |||||||||||| |||||| |||||||||||||||| |||| | ||| | | |||| Sbjct 324 ATTCGGACAGATCATCTTATCCTCATGTGGAGCGTTATCGGAAAAATGCTC-CAAAATTT 382 Query 358 GATTATCACGAATGGT-C-CC-AGTCGGTCCATGGCTTGATATGTTTGGGAGATTCTTG- 413 ||||||||| || ||| | || | |||||||||||||||||| |||||||||||| ||| Sbjct 383 GATTATCACCAACGGTACTCCGAATCGGTCCATGGCTTGATAGGTTTGGGAGATTTTTGT 442 Query 414 GGGCATATTGTAGTTTGGAATCCAATCATGAGACAACATGTTACCTT------A-CC--A 464 ||| ||||||||||||||||||||| ||||||||||||||||||||| | || | Sbjct 443 GGGAATATTGTAGTTTGGAATCCAACCATGAGACAACATGTTACCTTACCGAAACCCGAA 502 Query 465 --AA-AGTCGCATTTGAATGTAGCTCTTTAGGATATGATCCGGTCGAGGGTAAGTATAAA 521 || |||| ||| || |||||||| ||||||||| |||||||| ||||| ||||||||| Sbjct 503 CCAAGAGTCCCATGTGTATGTAGCTGTTTAGGATACGATCCGGTTGAGGGCAAGTATAAA 562 Query 522 GTCTTGTGCATCTCATGCTCTAGATACCAAGATCCTCTTGTTTTTACTTTGGGACCTCAA 581 ||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||| Sbjct 563 GTCTTGTGCATCTCAGGTTATAGATACCAAGATCCTCTTGTTTTTACTTTGGGACCTCAA 622 Query 582 GAATCATGGAGAGTGACACAAAATACCCCTAAACATGTCCCTCTATCCGCCGAGGG-ACT 640 ||||||||||||||| | ||||||| ||||||||||||||||| || | || ||| ||| Sbjct 623 GAATCATGGAGAGTGGCCCAAAATAGCCCTAAACATGTCCCTCGATGCACC-TGGGTACT 681 Query 641 AATACAAAGTATATGTATCAACGGGGAA-GTGTATTATGAAGCGAGTATACCTTTTGGAG 699 ||| ||||| ||| |||||| ||||| |||||||||||||||||||||||||||||| Sbjct 682 AAT---AAGTAAATGCATCAAC-GGGAATTTGTATTATGAAGCGAGTATACCTTTTGGAG 737 Query 700 TCGATGATAGTTCTGAAGTTGAGAAAGTCCTTATGAGCTTCGATGTGAGGTACGAAAAGT 759 || ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 738 TCAATGATAGTTTTGAAGTTGAAAAAGTCCTTATGAGCTTCGATGTGAGGTACGAAAAGT 797 Query 760 TCAACACAATAAGAAAATCAGCGGCTGATAATTTACTTTGCAAATTTTTCCTCAACTACG 819 |||||||||||| |||| |||| |||| ||||||||||| ||||||||||| |||||| Sbjct 798 TCAACACAATAAAAAAACCAGC---TGATGATTTACTTTGCGAATTTTTCCTCGACTACG 854 Query 820 AAGGAAAATTTGCATGGGTTTGCTCTGACGACGTCTCTGGTA-AATGATTTTGGGTTTTG 878 |||||||||| |||||||||||| | |||||||||| ||| || |||||||||||||| Sbjct 855 AAGGAAAATTAGCATGGGTTTGCGC---CGACGTCTCTTGTATAA-GATTTTGGGTTTTG 910 Query 879 GAGGATGAAGAGAAACAAGAACGGTCACTTAGAAAATTTC--CTC---A----A------ 923 ||||||||||||||||||||| |||| ||||||||||||| ||| | | Sbjct 911 GAGGATGAAGAGAAACAAGAATGGTCGCTTAGAAAATTTCTTCTCCCTATTCCAAAATTT 970 Query 924 C------GTGACCCGATCTGGAAAGTTTCTTGGGGGCTGAGAGGTATTACTCATGATCCA 977 | ||||| |||||||| |||||||||||| |||||||||||||||||| ||| | Sbjct 971 CCTCTACGTGACACGATCTGGGAAGTTTCTTGGGAGCTGAGAGGTATTACTCACGAT--A 1028 Query 978 CTGGTGAGTTTATTTATACAGCTGCAACAACATCTGAAGCAATTTATGTCTTATATTATG 1037 ||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||| Sbjct 1029 CTGGTGAGTTTATTTTTACAGATGAAACAACATCTGAAGCAATTTATGTCTTATATTATG 1088 Query 1038 ATCCAAAAAGAACCCTAGTAAGGAGGGTCAAATATGATTATATGAAGGAATTGGTGACGA 1097 |||||||||||| || |||||||||||||||||||| ||| ||| || | || Sbjct 1089 ATCCAAAAAGAAACCGCGTAAGGAGGGTCAAATATGAAGGTATT--GGA---GG-G--GA 1140 Query 1098 AGAATTCTGGAAGCTTAATCATAA--A-AATGTAAGAGAGGTCCGCTA-TTATCATAATC 1153 ||||||||||||||||||| || | | ||||||||||||||||| | || || ||||| Sbjct 1141 AGAATTCTGGAAGCTTAATGATCATTACAATGTAAGAGAGGTCCGTTTGTT-TCCTAATC 1199 Query 1154 ACACTGAGAGTCTCATGTCTTTGGAGGAAGTTCCTCGCTTAGCATATGAT 1203 ||| ||||||||| |||||||||||||| |||| || ||||||||||||| Sbjct 1200 ACAGTGAGAGTCTAATGTCTTTGGAGGACGTTC-TCTCTTAGCATATGAT 1248 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45709377483 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5