BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G60075.1
Length=1224
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925049 jgi|Araly1|925049|scaffold_200610.1 1249 0.0
> Ahg925049 jgi|Araly1|925049|scaffold_200610.1
Length=1260
Score = 1249 bits (676), Expect = 0.0
Identities = 1071/1250 (86%), Gaps = 74/1250 (6%)
Strand=Plus/Plus
Query 1 ATGGATAGA-GTAGAGGAAGAGGCGGAAGATAGGGAAGTAAGTATACAATCTAAAGAAGA 59
||||||||| | ||| |||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 26 ATGGATAGACG-AGAAGAAGAGGCGGAAGATAAAGAAATAAGTATACAATCTAAAGAAGA 84
Query 60 TGAGAGTTTTTGTAAGTTTCTCGAGATGATTCCTCTTGATCTAATTCCTGATATACTCTT 119
|||||||| | | |||||||||| |||||||||||||||||| |||| ||| ||||||||
Sbjct 85 TGAGAGTTGTAGAAAGTTTCTCGTGATGATTCCTCTTGATCTGATTCATGAGATACTCTT 144
Query 120 GAGACTTCCTGCTAAATCTGCTGCGAGGTTCCACTGGGTCTCTTAGCTATGGTCATCAAT 179
|||||||||||||||||| | ||| | ||||| || || || ||||||||||||| ||
Sbjct 145 GAGACTTCCTGCTAAATCCGTTGCAAAGTTCCGTTGCGTATCAAAGCTATGGTCATCCAT 204
Query 180 CACCACTCATCCAGATTTCATCAGGTCGTTCGCGAGTCAGTCTTCAACTAGGTTGTGTCT 239
||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 205 AACCACTCGCCCAGATTTCATCAGGTCGTTCGTGAGTCAGTCTTCAACTCGGTTGTGTCT 264
Query 240 TTTGGTCTGCGTGAAAACAAGTGACAAGCGTATTTTCTGCGCAATGCCC-CAACATGAAA 298
||| ||||||||||| ||||| ||| ||||| ||| |||| |||| ||| ||||||||||
Sbjct 265 TTTCGTCTGCGTGAACACAAGGGACGAGCGTCTTTCCTGCTCAAT-CCCTCAACATGAAA 323
Query 299 ATCCGGACAGATCATGTTATCCACATGTGGAGCGTTATCTGAAAGACACTCTC-ATATTT 357
|| |||||||||||| |||||| |||||||||||||||| |||| | ||| | | ||||
Sbjct 324 ATTCGGACAGATCATCTTATCCTCATGTGGAGCGTTATCGGAAAAATGCTC-CAAAATTT 382
Query 358 GATTATCACGAATGGT-C-CC-AGTCGGTCCATGGCTTGATATGTTTGGGAGATTCTTG- 413
||||||||| || ||| | || | |||||||||||||||||| |||||||||||| |||
Sbjct 383 GATTATCACCAACGGTACTCCGAATCGGTCCATGGCTTGATAGGTTTGGGAGATTTTTGT 442
Query 414 GGGCATATTGTAGTTTGGAATCCAATCATGAGACAACATGTTACCTT------A-CC--A 464
||| ||||||||||||||||||||| ||||||||||||||||||||| | || |
Sbjct 443 GGGAATATTGTAGTTTGGAATCCAACCATGAGACAACATGTTACCTTACCGAAACCCGAA 502
Query 465 --AA-AGTCGCATTTGAATGTAGCTCTTTAGGATATGATCCGGTCGAGGGTAAGTATAAA 521
|| |||| ||| || |||||||| ||||||||| |||||||| ||||| |||||||||
Sbjct 503 CCAAGAGTCCCATGTGTATGTAGCTGTTTAGGATACGATCCGGTTGAGGGCAAGTATAAA 562
Query 522 GTCTTGTGCATCTCATGCTCTAGATACCAAGATCCTCTTGTTTTTACTTTGGGACCTCAA 581
||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||
Sbjct 563 GTCTTGTGCATCTCAGGTTATAGATACCAAGATCCTCTTGTTTTTACTTTGGGACCTCAA 622
Query 582 GAATCATGGAGAGTGACACAAAATACCCCTAAACATGTCCCTCTATCCGCCGAGGG-ACT 640
||||||||||||||| | ||||||| ||||||||||||||||| || | || ||| |||
Sbjct 623 GAATCATGGAGAGTGGCCCAAAATAGCCCTAAACATGTCCCTCGATGCACC-TGGGTACT 681
Query 641 AATACAAAGTATATGTATCAACGGGGAA-GTGTATTATGAAGCGAGTATACCTTTTGGAG 699
||| ||||| ||| |||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 682 AAT---AAGTAAATGCATCAAC-GGGAATTTGTATTATGAAGCGAGTATACCTTTTGGAG 737
Query 700 TCGATGATAGTTCTGAAGTTGAGAAAGTCCTTATGAGCTTCGATGTGAGGTACGAAAAGT 759
|| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 738 TCAATGATAGTTTTGAAGTTGAAAAAGTCCTTATGAGCTTCGATGTGAGGTACGAAAAGT 797
Query 760 TCAACACAATAAGAAAATCAGCGGCTGATAATTTACTTTGCAAATTTTTCCTCAACTACG 819
|||||||||||| |||| |||| |||| ||||||||||| ||||||||||| ||||||
Sbjct 798 TCAACACAATAAAAAAACCAGC---TGATGATTTACTTTGCGAATTTTTCCTCGACTACG 854
Query 820 AAGGAAAATTTGCATGGGTTTGCTCTGACGACGTCTCTGGTA-AATGATTTTGGGTTTTG 878
|||||||||| |||||||||||| | |||||||||| ||| || ||||||||||||||
Sbjct 855 AAGGAAAATTAGCATGGGTTTGCGC---CGACGTCTCTTGTATAA-GATTTTGGGTTTTG 910
Query 879 GAGGATGAAGAGAAACAAGAACGGTCACTTAGAAAATTTC--CTC---A----A------ 923
||||||||||||||||||||| |||| ||||||||||||| ||| | |
Sbjct 911 GAGGATGAAGAGAAACAAGAATGGTCGCTTAGAAAATTTCTTCTCCCTATTCCAAAATTT 970
Query 924 C------GTGACCCGATCTGGAAAGTTTCTTGGGGGCTGAGAGGTATTACTCATGATCCA 977
| ||||| |||||||| |||||||||||| |||||||||||||||||| ||| |
Sbjct 971 CCTCTACGTGACACGATCTGGGAAGTTTCTTGGGAGCTGAGAGGTATTACTCACGAT--A 1028
Query 978 CTGGTGAGTTTATTTATACAGCTGCAACAACATCTGAAGCAATTTATGTCTTATATTATG 1037
||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1029 CTGGTGAGTTTATTTTTACAGATGAAACAACATCTGAAGCAATTTATGTCTTATATTATG 1088
Query 1038 ATCCAAAAAGAACCCTAGTAAGGAGGGTCAAATATGATTATATGAAGGAATTGGTGACGA 1097
|||||||||||| || |||||||||||||||||||| ||| ||| || | ||
Sbjct 1089 ATCCAAAAAGAAACCGCGTAAGGAGGGTCAAATATGAAGGTATT--GGA---GG-G--GA 1140
Query 1098 AGAATTCTGGAAGCTTAATCATAA--A-AATGTAAGAGAGGTCCGCTA-TTATCATAATC 1153
||||||||||||||||||| || | | ||||||||||||||||| | || || |||||
Sbjct 1141 AGAATTCTGGAAGCTTAATGATCATTACAATGTAAGAGAGGTCCGTTTGTT-TCCTAATC 1199
Query 1154 ACACTGAGAGTCTCATGTCTTTGGAGGAAGTTCCTCGCTTAGCATATGAT 1203
||| ||||||||| |||||||||||||| |||| || |||||||||||||
Sbjct 1200 ACAGTGAGAGTCTAATGTCTTTGGAGGACGTTC-TCTCTTAGCATATGAT 1248
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45709377483
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5