BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G60130.1
Length=1803
Score E
Sequences producing significant alignments: (Bits) Value
Ahg906278 jgi|Araly1|906278|Al_scaffold_0003_3406 1188 0.0
Ahg355180 jgi|Araly1|355180|fgenesh1_pg.C_scaffold_7002353 134 3e-30
Ahg923717 jgi|Araly1|923717|scaffold_104998.1 97.1 4e-19
Ahg474323 jgi|Araly1|474323|fgenesh2_kg.1__4277__AT1G52050.1 65.8 1e-09
> Ahg906278 jgi|Araly1|906278|Al_scaffold_0003_3406
Length=1761
Score = 1188 bits (643), Expect = 0.0
Identities = 1445/1817 (80%), Gaps = 116/1817 (6%)
Strand=Plus/Plus
Query 31 ATGACCCAAAGGTTGGAAGCACAAGGTCAAAAGACCCTGGATAGCCCATT-TGTGTGGGA 89
||||||||| |||||||||| ||||| | | | | ||| | | ||| || ||||||
Sbjct 1 ATGACCCAACGGTTGGAAGCGCAAGG-GACTA-A--C--GATCG-CAATTATGAGTGGGA 53
Query 90 TGATGGATCCGACCATGATGACGTAACAAAAATA-CATGTAAGAGGTGACTCTCGA-GGC 147
||||||||| ||||||||||| |||||||| ||| | ||| ||||||||| | | |||
Sbjct 54 TGATGGATCGGACCATGATGATGTAACAAAGATATC-TGTGAGAGGTGAC-ATTAATGGC 111
Query 148 ATA-AACTGCATCCGATTTGATTATATCAAGAGTGGACAACGGAAATATAAATCA-TTCT 205
||| || | ||||||||| || |||||||||||||||||| |||||| |||| |||
Sbjct 112 ATACAA-TACATCCGATTCGACTATATCAAGAGTGGACAAATAAAATATGGATCATTTC- 169
Query 206 ATGGTCCCTCGTGGGCAGGTTTCACCCAAACGTTTAAGATTAACCATAA--AGAAGATGA 263
||||| || | ||||| || | ||||||||| ||||||| || || | |||| ||
Sbjct 170 ATGGTTGGACGAGTCCAGGTCTCTCACAAACGTTTGAGATTAA-CA-AACTAAAAGACGA 227
Query 264 ACAACTTGAATCTGTTGAGGGTTTTTA-TAAGCCAGACTCGCGTACAATTGTAGGACTTC 322
|||||||||||| |||||||||| || || ||| ||||| || ||| |||| |||
Sbjct 228 ACAACTTGAATCCGTTGAGGGTTACTACGAACCCA-ACTCGGGTGTGATTCAAGGAATTC 286
Query 323 AATTTAAAACCAACTTGAGGATTTCTGAACTGATAGGACATGGAAAAAAGGATGATACTA 382
|||| ||||||||||||||| |||||||||| |||||| | ||| ||| ||| |||||
Sbjct 287 AATTCAAAACCAACTTGAGGGTTTCTGAACTAATAGGATA-CGAAGAAA--ATGGTACTA 343
Query 383 AGTTTTCATTAGCTGTGGACGGAAAGAAAATCATCGGGTTTCACGGAT---GTTCCGGCA 439
|||||||| |||||||||| |||||||| ||||| |||||||| |||| ||| | ||
Sbjct 344 AGTTTTCACTAGCTGTGGATGGAAAGAAGATCATTGGGTTTCATGGATCAAGTT-CATCA 402
Query 440 GTTACCT-AGAGTCTCTTGGAGCATATTTCACTTGCATTGCTCCAACTAGAATGGAAG-C 497
| || | | ||||||||||||||||||||| | ||| ||||||||||| ||||||
Sbjct 403 --AAGCTCA-AATCTCTTGGAGCATATTTCACTAGGATTTCTCCAACTAGATTGGAAGTG 459
Query 498 AAAAGGAGCAAAAGGAGG-AACGGATTGGAACGATGGAGCTGACCATGAAGGTGTTGCAA 556
||| ||| ||||||||| || ||| |||||||||||| | || |||||||||||| |||
Sbjct 460 AAAGGGA-TAAAAGGAGGCAA-GGAGTGGAACGATGGATCCGATCATGAAGGTGTTACAA 517
Query 557 AAATATACGTCCGAGGTGGGCGTGATTGTATACAATACATCAAGTTCGATTATGTCAAGG 616
|||| | || |||||||| | ||| ||||||||||| ||||||| |||||| | | ||
Sbjct 518 AAATCCATGTACGAGGTGGTCCTGAAGGTATACAATACGTCAAGTTTGATTATATTACGG 577
Query 617 ATAGAAAATATATATATGGGCCAGCCCATGGTGTCAGGGGTAGAGGTTTCACAG-AGTC- 674
|| | ||| |||||||||||| ||| ||||||| || |||||||||||||| | | |
Sbjct 578 ATGGCAAACATATATATGGGCAAGCTCATGGTGCCACAGGTAGAGGTTTCAC-GCAACCG 636
Query 675 TTTCGAGATTAACCATCTCGACAATGAATATATGGTATCTGTTGAGGGTTATTATGACGA 734
||| ||||| ||||| || |||| |||||| ||||||||||||||||||| |||||| |
Sbjct 637 TTT-GAGATCGACCATTTCAACAAGGAATATTTGGTATCTGTTGAGGGTTACTATGAC-A 694
Query 735 AGGTGATTC--GGGGATCATTC-AGGGAATTCAATTCAGAACTAATATCAAGACTTCAGA 791
| | | | |||| |||||| |||| |||||||||||||||| | ||||||||||||
Sbjct 695 ACGACAAACATGGGG-TCATTCAAGGG-CTTCAATTCAGAACTAACAACAAGACTTCAGA 752
Query 792 ACTGATAGGATACAACAATGGTAAGAAGTTTTCACTTGCAGCCAATGGAAAGAAGATCAT 851
| |||| |||||| ||||||||||||||||| |||| ||||| | |||||||||||| ||
Sbjct 753 ATTGATGGGATACGACAATGGTAAGAAGTTTACACTAGCAGCTAGTGGAAAGAAGATAAT 812
Query 852 TGGGTTTCATGGATATGCTGACCAGAATCTAAACTCTCTTGGAGCATATTTCACAACCTC 911
|||||||||||||| |||||| ||||||||||| |||| ||||||||||||||||| |
Sbjct 813 TGGGTTTCATGGATTTGCTGAGAAGAATCTAAACGCTCTGGGAGCATATTTCACAACTTT 872
Query 912 TCCTTTTATTAAATTGGAA-TC-CA-G-GG-AAT-CTACT-GGTGATCTCTGGGATGATG 964
|||||||| |||||| ||| || | | || | | || || || | | ||||||||||
Sbjct 873 TCCTTTTACTAAATTAGAACTCAAAGGTGGTACTACT-CTAGGAAAAATTTGGGATGATG 931
Query 965 GCACTTTTGAAGGTGTAAGGAAGGTGT--G--CATTCATAAACAGCCGGTTTTATATTCA 1020
| ||||||| || ||||| ||||||| | ||||| |||| | | | |||| | |
Sbjct 932 GTGCTTTTGAGGGCGTAAGAAAGGTGTCCGTTCATTC-TAAA-A-AC--TCTTATGTAAA 986
Query 1021 GTG-ATCCA-ATTCGAGTATGTAAACAGA-GGCGAGGTGGAAAATCGTGA-CCTGGGGTT 1076
|| | || |||| | |||| ||||| | ||| | |||||||| ||||| | | ||||
Sbjct 987 TTGCGT-CACATTCCATTATGAAAACA-ATGGCAAAGTGGAAAAGCGTGAGCAT-GGGTC 1043
Query 1077 GAGGGTATTTATAGCAGAAGAAGGAGAGTTTGTTGT-GAACTATCCTTACGAATTTATCA 1135
|| || | | | |||||| |||||||| || | ||| ||| | ||||||||||
Sbjct 1044 GATGG-----CT-GGAAAAGAAGAAGAGTTTGCGGTCG-ACTTTCCAAATGAATTTATCA 1096
Query 1136 TATCTGTGGAGGGGACATTC-ACAAATGAAAAAGATCCT-CAT-G-TTGCGTCATTGACT 1191
||| ||||| ||||| || ||| | | | | | | | ||||||| ||||||
Sbjct 1097 CATCCGTGGAAGGGAC--TCTGGAAA--CCGATGGTTATACGTGGATTGCGTCCTTGACT 1152
Query 1192 TTCAAAACATCAAAAGGGAGAACTTCTTCAACATTTGGAACTCCGGGTACT-AAA--AAA 1248
||||||||||| | ||||||||||||| || ||||||||| | | ||| ||| |||
Sbjct 1153 TTCAAAACATCTAGAGGGAGAACTTCTCCACCATTTGGAAGT--ATG-ACTAAAACTAAA 1209
Query 1249 TTTGTGCTTCAG-AGCAAAGGTTGTGGC-GTTGTTGGGTTCCATGGAGTGTTGTCCAATG 1306
|| || ||| || || |||||||| || || ||||||||||||||| | ||| | ||
Sbjct 1210 TTCGTACTTGAGAAG-AAAGGTTG-CGCTGTGGTTGGGTTCCATGGA-CG--GTCTACTG 1264
Query 1307 ATTATATTTCTGG-GCTTGGAGCATATTTCCGTCTGCTGCCACCT-C--TTCCTGACGGA 1362
|| ||||| ||| |||||||||||||| || |||||| ||| | || || |||
Sbjct 1265 GTTGTATTT-TGGCTCTTGGAGCATATTTTTATCCGCTGCCTCCTCCGGTTGGTG-TGGA 1322
Query 1363 GAAAAAGTAGAAGCAAAAGGTGGTGATGGAGGAG-CTTCTTGGGACGATGGCGGTTTTGA 1421
| ||| |||||||||||||| ||||| |||||| | |||||||||||||| |||||||
Sbjct 1323 G--AAACTAGAAGCAAAAGGTAGTGATAGAGGAGAC-TCTTGGGACGATGGAAGTTTTGA 1379
Query 1422 TTGCATTAGAAAGATATACATAGGACACGGCGAGATGGGTATCGCATTTGTAAAGTTTCT 1481
| | |||||||| |||||||| |||||| |||||||||| | |||||||| ||||||||
Sbjct 1380 TAGTATTAGAAACATATACATGGGACACAACGAGATGGGTGTTGCATTTGTCAAGTTTCT 1439
Query 1482 CTACGACAAGGACAATAAGTTC-GTGGTCGGAGATGATCATGGGAGCAAGACATTACTTG 1540
|||||||| |||| || | ||| |||||||||||||||||| ||||||||||||||
Sbjct 1440 GTACGACAAAGACAGCCAG-ACAGTGATCGGAGATGATCATGGGAACAAGACATTACTTG 1498
Query 1541 GAGTTGATGAGTTTGAGTTGGAGCATCC-AGATGAATACCTGATATCTGTGGAGGGTAGT 1599
||||||||||||||||||||||| |||| | | |||||||||||||| || |||||||||
Sbjct 1499 GAGTTGATGAGTTTGAGTTGGAGTATCCGAAA-GAATACCTGATATCAGTTGAGGGTAGT 1557
Query 1600 TATGATGTAGTAGATGGAAGTGAATCCGAAGTTATACTCATGCTTAGGTTCAAGACCAAT 1659
| |||||| |||| |||||||||| |||||||||| ||||||||| ||||||||||||
Sbjct 1558 TGTGATGTTTTAGACGGAAGTGAATATGAAGTTATACGCATGCTTAGTTTCAAGACCAAT 1617
Query 1660 ATGCGAACCTCTCAAGTCTTTGGACTCGACACAACATCAAGCTTCATACTCGAGAAGGAA 1719
|||||||||||| || | ||||||||||| ||||| ||||||||||||||| ||||||||
Sbjct 1618 ATGCGAACCTCTAAAATTTTTGGACTCGAGACAACCTCAAGCTTCATACTCCAGAAGGAA 1677
Query 1720 TGTCACAAGATCGTCGGGTTCCATGGGAAAA-TAGGTAAGATGCTTCATCAAATTGGGGT 1778
||||| |||||||| ||||||||||| |||| || |||| ||||||||||||||||| ||
Sbjct 1678 TGTCATAAGATCGTTGGGTTCCATGG-AAAAGTAAGTAACATGCTTCATCAAATTGGTGT 1736
Query 1779 CCATGTCTTACCTATTA 1795
||||||| |||||||||
Sbjct 1737 CCATGTCCTACCTATTA 1753
Score = 121 bits (65), Expect = 2e-26
Identities = 291/395 (74%), Gaps = 36/395 (9%)
Strand=Plus/Plus
Query 529 GATGGAGCTGACCATGAAGGTGTTGCAAAAATATAC-GTCCGAGGTGGGC-GTGATTGTA 586
|||||| | |||||||| | ||| |||| |||| | || ||||| | | | || | |
Sbjct 55 GATGGATCGGACCATGATGATGTAACAAAGATAT-CTGTGAGAGGT-GACATTAATGGCA 112
Query 587 TACAATACAT-CAAGTTCGATTATGTCAAGGA-TAGA-AAATATATATATGGGCCAGCCC 643
|||||||||| | | ||||| ||| |||| || | || ||||| | |||||| || |
Sbjct 113 TACAATACATCCGA-TTCGACTATATCAA-GAGTGGACAAATA-AAATATGGATCATTTC 169
Query 644 ATGG-TGTCAGGGGTAGAGGT-T-TCACAGAGTC-TTTCGAGATTAACCATCTCGACA-A 698
|||| || | | || |||| | ||||| | | ||| ||||||||| | || | | |
Sbjct 170 ATGGTTG-GACGAGTCCAGGTCTCTCACA-A-ACGTTT-GAGATTAACAAACT-AAAAGA 224
Query 699 TGAATATA-TGGTATCTGTTGAGGGTTATTATGACGAAGGTGATTCGGG-GATCATTCAG 756
||| | | | | ||| ||||||||||| | ||||| | ||||| | | |||||
Sbjct 225 CGAACA-ACTTGAATCCGTTGAGGGTTA--CT-ACGAACCCAACTCGGGTG-TGATTCAA 279
Query 757 GGAATTCAATTCAGAACTAA-TATCAAGACTTCAGAACTGATAGGATAC--A-ACAATGG 812
||||||||||||| ||| || | | | | ||| ||||| ||||||||| | | |||||
Sbjct 280 GGAATTCAATTCAAAACCAACT-TGAGGGTTTCTGAACTAATAGGATACGAAGAAAATGG 338
Query 813 TAAGAAGTTTTCACTTGCAGCCAATGGAAAGAAGATCATTGGGTTTCATGGAT-ATGCTG 871
|| ||||||||||| || | |||||||||||||||||||||||||||||| | | |
Sbjct 339 TACTAAGTTTTCACTAGCTGTGGATGGAAAGAAGATCATTGGGTTTCATGGATCAAGTTC 398
Query 872 ACCAGAATCT-AAACTCTCTTGGAGCATATTTCAC 905
| || || || ||| ||||||||||||||||||||
Sbjct 399 ATCA-AAGCTCAAA-TCTCTTGGAGCATATTTCAC 431
> Ahg355180 jgi|Araly1|355180|fgenesh1_pg.C_scaffold_7002353
Length=456
Score = 134 bits (72), Expect = 3e-30
Identities = 265/355 (75%), Gaps = 25/355 (7%)
Strand=Plus/Plus
Query 1365 AAAAGTAGAAGCAAAAGGTGGTGATGGAGGAGCTTCTTGGGACGATGG-CGG--TTTTGA 1421
|||| |||| |||||||||||||||||||||||||||||||| || || || ||||||
Sbjct 78 AAAACTAGAGGCAAAAGGTGGTGATGGAGGAGCTTCTTGGGATGACGGTCGTAATTTTGA 137
Query 1422 TTGCATTAGAAAGATATACATAGGAC-ACGGCGAGATGGGTATCGCATTTGTAAAGTTTC 1480
| |||||||||||| |||||||| | | ||| | | ||| || || || ||||||
Sbjct 138 AGGTGTTAGAAAGATATTCATAGGACTAAG-CGAAAACGCTATAGCCTTCGTCAAGTTTA 196
Query 1481 TCTACGACAAGGACAATAAGTTCGTGGT-CGGAGATGATCATGGGAGCAAGACATTACTT 1539
| ||| |||| ||| | | | || | ||||||||||||||||| |||||| ||| ||
Sbjct 197 TGTACTACAAAGACGCTCGGATGGTC-TACGGAGATGATCATGGGAACAAGACCTTATTT 255
Query 1540 GGA-GTTGATGAGTTTGAGTTGGAGCATCCAGATGAATACCTGATATCTGTGGAGGGTAG 1598
| | | | ||||| || || | |||||| |||||| | | || |||||||||||
Sbjct 256 G-ATGACAAAGAGTTCGAACTGAATTATCCAGTTGAATATGTCACGTCAGTGGAGGGTAG 314
Query 1599 TTATGATGTAGTAGATGGAAGTGAATCCGAAGTTATA-CTCATGCTTAGGTTCAAGACCA 1657
|||||| | | || || | |||| |||||| | ||||||||||||||||||||
Sbjct 315 TTATGA---A--A-AT--AA---A-TCCGGGGTTATAAC-CATGCTTAGGTTCAAGACCA 361
Query 1658 ATATGCGAACCTCTCAAGTCTTTGGACTCGACACAACATCAAGCTTC-ATACTCG 1711
| | | ||||| || || | ||||| ||| |||||||| || ||| | |||||
Sbjct 362 ACAACCAAACCTTTCCAGACATTGGAATCGGTACAACATCTAGTTTCGA-ACTCG 415
> Ahg923717 jgi|Araly1|923717|scaffold_104998.1
Length=574
Score = 97.1 bits (52), Expect = 4e-19
Identities = 205/275 (75%), Gaps = 26/275 (9%)
Strand=Plus/Plus
Query 675 TTTCGAGATTAACCATCTCGACAATGAATATATGGTATCTGTTGAGGGTTATTATGACGA 734
||| |||||||||||| ||||||| |||||| || | ||| | || ||||| ||||| |
Sbjct 282 TTT-GAGATTAACCATATCGACAAGGAATATCTGCTGTCTATCGATGGTTACTATGATG- 339
Query 735 AGGTGATTC-GGGGATCATTCAGGGAATTCAATTCAGA-ACTAATATCAAGACTTCAGAA 792
| | | || || | ||||||| | | | ||||||| | || || || ||| ||| | |
Sbjct 340 A-GACA-TCAGGTG-TCATTCAAGCACTGCAATTCA-ATACCAACATGAAGCCTTGGGCA 395
Query 793 CTGATAGG--A-TA-CAACA--ATGGTAAGAAGTTTTCACTTGCA-GCCAATGGAAAGAA 845
|| || || | || || | ||| | ||||||| || ||| | | |||||| || ||
Sbjct 396 CTTATGGGCTACTATGAAGATGATGCTGTGAAGTTTACAATTGGATG-CAATGGTAATAA 454
Query 846 GATCATTGGG------TTTCATGGATATGCTGACCAGAATCTAAACTCTCTTGGAGCATA 899
|||||||||| ||||||||||| ||||| |||| ||||||||||||||||||||
Sbjct 455 GATCATTGGGTTTCATTTTCATGGATACGCTGAGAAGAACCTAAACTCTCTTGGAGCATA 514
Query 900 TTTCACAAC-CTCTCCTTT-TAT-TAAATTGGAAT 931
|||||||| || |||| || |||||||||||
Sbjct 515 TTTCACAATACT-TCCTCGCTACCTAAATTGGAAT 548
> Ahg474323 jgi|Araly1|474323|fgenesh2_kg.1__4277__AT1G52050.1
Length=1015
Score = 65.8 bits (35), Expect = 1e-09
Identities = 47/52 (90%), Gaps = 4/52 (8%)
Strand=Plus/Plus
Query 1181 CGTCATTGACTTTCAAAACATCAAAAGGGAGAA-CTTCTTCA-ACATTTGGA 1230
|||||||||||||||||||||||||||| |||| || || || |||||||||
Sbjct 787 CGTCATTGACTTTCAAAACATCAAAAGGAAGAATCT-CT-CAGACATTTGGA 836
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67686365365
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5