BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G60130.1 Length=1803 Score E Sequences producing significant alignments: (Bits) Value Ahg906278 jgi|Araly1|906278|Al_scaffold_0003_3406 1188 0.0 Ahg355180 jgi|Araly1|355180|fgenesh1_pg.C_scaffold_7002353 134 3e-30 Ahg923717 jgi|Araly1|923717|scaffold_104998.1 97.1 4e-19 Ahg474323 jgi|Araly1|474323|fgenesh2_kg.1__4277__AT1G52050.1 65.8 1e-09 > Ahg906278 jgi|Araly1|906278|Al_scaffold_0003_3406 Length=1761 Score = 1188 bits (643), Expect = 0.0 Identities = 1445/1817 (80%), Gaps = 116/1817 (6%) Strand=Plus/Plus Query 31 ATGACCCAAAGGTTGGAAGCACAAGGTCAAAAGACCCTGGATAGCCCATT-TGTGTGGGA 89 ||||||||| |||||||||| ||||| | | | | ||| | | ||| || |||||| Sbjct 1 ATGACCCAACGGTTGGAAGCGCAAGG-GACTA-A--C--GATCG-CAATTATGAGTGGGA 53 Query 90 TGATGGATCCGACCATGATGACGTAACAAAAATA-CATGTAAGAGGTGACTCTCGA-GGC 147 ||||||||| ||||||||||| |||||||| ||| | ||| ||||||||| | | ||| Sbjct 54 TGATGGATCGGACCATGATGATGTAACAAAGATATC-TGTGAGAGGTGAC-ATTAATGGC 111 Query 148 ATA-AACTGCATCCGATTTGATTATATCAAGAGTGGACAACGGAAATATAAATCA-TTCT 205 ||| || | ||||||||| || |||||||||||||||||| |||||| |||| ||| Sbjct 112 ATACAA-TACATCCGATTCGACTATATCAAGAGTGGACAAATAAAATATGGATCATTTC- 169 Query 206 ATGGTCCCTCGTGGGCAGGTTTCACCCAAACGTTTAAGATTAACCATAA--AGAAGATGA 263 ||||| || | ||||| || | ||||||||| ||||||| || || | |||| || Sbjct 170 ATGGTTGGACGAGTCCAGGTCTCTCACAAACGTTTGAGATTAA-CA-AACTAAAAGACGA 227 Query 264 ACAACTTGAATCTGTTGAGGGTTTTTA-TAAGCCAGACTCGCGTACAATTGTAGGACTTC 322 |||||||||||| |||||||||| || || ||| ||||| || ||| |||| ||| Sbjct 228 ACAACTTGAATCCGTTGAGGGTTACTACGAACCCA-ACTCGGGTGTGATTCAAGGAATTC 286 Query 323 AATTTAAAACCAACTTGAGGATTTCTGAACTGATAGGACATGGAAAAAAGGATGATACTA 382 |||| ||||||||||||||| |||||||||| |||||| | ||| ||| ||| ||||| Sbjct 287 AATTCAAAACCAACTTGAGGGTTTCTGAACTAATAGGATA-CGAAGAAA--ATGGTACTA 343 Query 383 AGTTTTCATTAGCTGTGGACGGAAAGAAAATCATCGGGTTTCACGGAT---GTTCCGGCA 439 |||||||| |||||||||| |||||||| ||||| |||||||| |||| ||| | || Sbjct 344 AGTTTTCACTAGCTGTGGATGGAAAGAAGATCATTGGGTTTCATGGATCAAGTT-CATCA 402 Query 440 GTTACCT-AGAGTCTCTTGGAGCATATTTCACTTGCATTGCTCCAACTAGAATGGAAG-C 497 | || | | ||||||||||||||||||||| | ||| ||||||||||| |||||| Sbjct 403 --AAGCTCA-AATCTCTTGGAGCATATTTCACTAGGATTTCTCCAACTAGATTGGAAGTG 459 Query 498 AAAAGGAGCAAAAGGAGG-AACGGATTGGAACGATGGAGCTGACCATGAAGGTGTTGCAA 556 ||| ||| ||||||||| || ||| |||||||||||| | || |||||||||||| ||| Sbjct 460 AAAGGGA-TAAAAGGAGGCAA-GGAGTGGAACGATGGATCCGATCATGAAGGTGTTACAA 517 Query 557 AAATATACGTCCGAGGTGGGCGTGATTGTATACAATACATCAAGTTCGATTATGTCAAGG 616 |||| | || |||||||| | ||| ||||||||||| ||||||| |||||| | | || Sbjct 518 AAATCCATGTACGAGGTGGTCCTGAAGGTATACAATACGTCAAGTTTGATTATATTACGG 577 Query 617 ATAGAAAATATATATATGGGCCAGCCCATGGTGTCAGGGGTAGAGGTTTCACAG-AGTC- 674 || | ||| |||||||||||| ||| ||||||| || |||||||||||||| | | | Sbjct 578 ATGGCAAACATATATATGGGCAAGCTCATGGTGCCACAGGTAGAGGTTTCAC-GCAACCG 636 Query 675 TTTCGAGATTAACCATCTCGACAATGAATATATGGTATCTGTTGAGGGTTATTATGACGA 734 ||| ||||| ||||| || |||| |||||| ||||||||||||||||||| |||||| | Sbjct 637 TTT-GAGATCGACCATTTCAACAAGGAATATTTGGTATCTGTTGAGGGTTACTATGAC-A 694 Query 735 AGGTGATTC--GGGGATCATTC-AGGGAATTCAATTCAGAACTAATATCAAGACTTCAGA 791 | | | | |||| |||||| |||| |||||||||||||||| | |||||||||||| Sbjct 695 ACGACAAACATGGGG-TCATTCAAGGG-CTTCAATTCAGAACTAACAACAAGACTTCAGA 752 Query 792 ACTGATAGGATACAACAATGGTAAGAAGTTTTCACTTGCAGCCAATGGAAAGAAGATCAT 851 | |||| |||||| ||||||||||||||||| |||| ||||| | |||||||||||| || Sbjct 753 ATTGATGGGATACGACAATGGTAAGAAGTTTACACTAGCAGCTAGTGGAAAGAAGATAAT 812 Query 852 TGGGTTTCATGGATATGCTGACCAGAATCTAAACTCTCTTGGAGCATATTTCACAACCTC 911 |||||||||||||| |||||| ||||||||||| |||| ||||||||||||||||| | Sbjct 813 TGGGTTTCATGGATTTGCTGAGAAGAATCTAAACGCTCTGGGAGCATATTTCACAACTTT 872 Query 912 TCCTTTTATTAAATTGGAA-TC-CA-G-GG-AAT-CTACT-GGTGATCTCTGGGATGATG 964 |||||||| |||||| ||| || | | || | | || || || | | |||||||||| Sbjct 873 TCCTTTTACTAAATTAGAACTCAAAGGTGGTACTACT-CTAGGAAAAATTTGGGATGATG 931 Query 965 GCACTTTTGAAGGTGTAAGGAAGGTGT--G--CATTCATAAACAGCCGGTTTTATATTCA 1020 | ||||||| || ||||| ||||||| | ||||| |||| | | | |||| | | Sbjct 932 GTGCTTTTGAGGGCGTAAGAAAGGTGTCCGTTCATTC-TAAA-A-AC--TCTTATGTAAA 986 Query 1021 GTG-ATCCA-ATTCGAGTATGTAAACAGA-GGCGAGGTGGAAAATCGTGA-CCTGGGGTT 1076 || | || |||| | |||| ||||| | ||| | |||||||| ||||| | | |||| Sbjct 987 TTGCGT-CACATTCCATTATGAAAACA-ATGGCAAAGTGGAAAAGCGTGAGCAT-GGGTC 1043 Query 1077 GAGGGTATTTATAGCAGAAGAAGGAGAGTTTGTTGT-GAACTATCCTTACGAATTTATCA 1135 || || | | | |||||| |||||||| || | ||| ||| | |||||||||| Sbjct 1044 GATGG-----CT-GGAAAAGAAGAAGAGTTTGCGGTCG-ACTTTCCAAATGAATTTATCA 1096 Query 1136 TATCTGTGGAGGGGACATTC-ACAAATGAAAAAGATCCT-CAT-G-TTGCGTCATTGACT 1191 ||| ||||| ||||| || ||| | | | | | | | ||||||| |||||| Sbjct 1097 CATCCGTGGAAGGGAC--TCTGGAAA--CCGATGGTTATACGTGGATTGCGTCCTTGACT 1152 Query 1192 TTCAAAACATCAAAAGGGAGAACTTCTTCAACATTTGGAACTCCGGGTACT-AAA--AAA 1248 ||||||||||| | ||||||||||||| || ||||||||| | | ||| ||| ||| Sbjct 1153 TTCAAAACATCTAGAGGGAGAACTTCTCCACCATTTGGAAGT--ATG-ACTAAAACTAAA 1209 Query 1249 TTTGTGCTTCAG-AGCAAAGGTTGTGGC-GTTGTTGGGTTCCATGGAGTGTTGTCCAATG 1306 || || ||| || || |||||||| || || ||||||||||||||| | ||| | || Sbjct 1210 TTCGTACTTGAGAAG-AAAGGTTG-CGCTGTGGTTGGGTTCCATGGA-CG--GTCTACTG 1264 Query 1307 ATTATATTTCTGG-GCTTGGAGCATATTTCCGTCTGCTGCCACCT-C--TTCCTGACGGA 1362 || ||||| ||| |||||||||||||| || |||||| ||| | || || ||| Sbjct 1265 GTTGTATTT-TGGCTCTTGGAGCATATTTTTATCCGCTGCCTCCTCCGGTTGGTG-TGGA 1322 Query 1363 GAAAAAGTAGAAGCAAAAGGTGGTGATGGAGGAG-CTTCTTGGGACGATGGCGGTTTTGA 1421 | ||| |||||||||||||| ||||| |||||| | |||||||||||||| ||||||| Sbjct 1323 G--AAACTAGAAGCAAAAGGTAGTGATAGAGGAGAC-TCTTGGGACGATGGAAGTTTTGA 1379 Query 1422 TTGCATTAGAAAGATATACATAGGACACGGCGAGATGGGTATCGCATTTGTAAAGTTTCT 1481 | | |||||||| |||||||| |||||| |||||||||| | |||||||| |||||||| Sbjct 1380 TAGTATTAGAAACATATACATGGGACACAACGAGATGGGTGTTGCATTTGTCAAGTTTCT 1439 Query 1482 CTACGACAAGGACAATAAGTTC-GTGGTCGGAGATGATCATGGGAGCAAGACATTACTTG 1540 |||||||| |||| || | ||| |||||||||||||||||| |||||||||||||| Sbjct 1440 GTACGACAAAGACAGCCAG-ACAGTGATCGGAGATGATCATGGGAACAAGACATTACTTG 1498 Query 1541 GAGTTGATGAGTTTGAGTTGGAGCATCC-AGATGAATACCTGATATCTGTGGAGGGTAGT 1599 ||||||||||||||||||||||| |||| | | |||||||||||||| || ||||||||| Sbjct 1499 GAGTTGATGAGTTTGAGTTGGAGTATCCGAAA-GAATACCTGATATCAGTTGAGGGTAGT 1557 Query 1600 TATGATGTAGTAGATGGAAGTGAATCCGAAGTTATACTCATGCTTAGGTTCAAGACCAAT 1659 | |||||| |||| |||||||||| |||||||||| ||||||||| |||||||||||| Sbjct 1558 TGTGATGTTTTAGACGGAAGTGAATATGAAGTTATACGCATGCTTAGTTTCAAGACCAAT 1617 Query 1660 ATGCGAACCTCTCAAGTCTTTGGACTCGACACAACATCAAGCTTCATACTCGAGAAGGAA 1719 |||||||||||| || | ||||||||||| ||||| ||||||||||||||| |||||||| Sbjct 1618 ATGCGAACCTCTAAAATTTTTGGACTCGAGACAACCTCAAGCTTCATACTCCAGAAGGAA 1677 Query 1720 TGTCACAAGATCGTCGGGTTCCATGGGAAAA-TAGGTAAGATGCTTCATCAAATTGGGGT 1778 ||||| |||||||| ||||||||||| |||| || |||| ||||||||||||||||| || Sbjct 1678 TGTCATAAGATCGTTGGGTTCCATGG-AAAAGTAAGTAACATGCTTCATCAAATTGGTGT 1736 Query 1779 CCATGTCTTACCTATTA 1795 ||||||| ||||||||| Sbjct 1737 CCATGTCCTACCTATTA 1753 Score = 121 bits (65), Expect = 2e-26 Identities = 291/395 (74%), Gaps = 36/395 (9%) Strand=Plus/Plus Query 529 GATGGAGCTGACCATGAAGGTGTTGCAAAAATATAC-GTCCGAGGTGGGC-GTGATTGTA 586 |||||| | |||||||| | ||| |||| |||| | || ||||| | | | || | | Sbjct 55 GATGGATCGGACCATGATGATGTAACAAAGATAT-CTGTGAGAGGT-GACATTAATGGCA 112 Query 587 TACAATACAT-CAAGTTCGATTATGTCAAGGA-TAGA-AAATATATATATGGGCCAGCCC 643 |||||||||| | | ||||| ||| |||| || | || ||||| | |||||| || | Sbjct 113 TACAATACATCCGA-TTCGACTATATCAA-GAGTGGACAAATA-AAATATGGATCATTTC 169 Query 644 ATGG-TGTCAGGGGTAGAGGT-T-TCACAGAGTC-TTTCGAGATTAACCATCTCGACA-A 698 |||| || | | || |||| | ||||| | | ||| ||||||||| | || | | | Sbjct 170 ATGGTTG-GACGAGTCCAGGTCTCTCACA-A-ACGTTT-GAGATTAACAAACT-AAAAGA 224 Query 699 TGAATATA-TGGTATCTGTTGAGGGTTATTATGACGAAGGTGATTCGGG-GATCATTCAG 756 ||| | | | | ||| ||||||||||| | ||||| | ||||| | | ||||| Sbjct 225 CGAACA-ACTTGAATCCGTTGAGGGTTA--CT-ACGAACCCAACTCGGGTG-TGATTCAA 279 Query 757 GGAATTCAATTCAGAACTAA-TATCAAGACTTCAGAACTGATAGGATAC--A-ACAATGG 812 ||||||||||||| ||| || | | | | ||| ||||| ||||||||| | | ||||| Sbjct 280 GGAATTCAATTCAAAACCAACT-TGAGGGTTTCTGAACTAATAGGATACGAAGAAAATGG 338 Query 813 TAAGAAGTTTTCACTTGCAGCCAATGGAAAGAAGATCATTGGGTTTCATGGAT-ATGCTG 871 || ||||||||||| || | |||||||||||||||||||||||||||||| | | | Sbjct 339 TACTAAGTTTTCACTAGCTGTGGATGGAAAGAAGATCATTGGGTTTCATGGATCAAGTTC 398 Query 872 ACCAGAATCT-AAACTCTCTTGGAGCATATTTCAC 905 | || || || ||| |||||||||||||||||||| Sbjct 399 ATCA-AAGCTCAAA-TCTCTTGGAGCATATTTCAC 431 > Ahg355180 jgi|Araly1|355180|fgenesh1_pg.C_scaffold_7002353 Length=456 Score = 134 bits (72), Expect = 3e-30 Identities = 265/355 (75%), Gaps = 25/355 (7%) Strand=Plus/Plus Query 1365 AAAAGTAGAAGCAAAAGGTGGTGATGGAGGAGCTTCTTGGGACGATGG-CGG--TTTTGA 1421 |||| |||| |||||||||||||||||||||||||||||||| || || || |||||| Sbjct 78 AAAACTAGAGGCAAAAGGTGGTGATGGAGGAGCTTCTTGGGATGACGGTCGTAATTTTGA 137 Query 1422 TTGCATTAGAAAGATATACATAGGAC-ACGGCGAGATGGGTATCGCATTTGTAAAGTTTC 1480 | |||||||||||| |||||||| | | ||| | | ||| || || || |||||| Sbjct 138 AGGTGTTAGAAAGATATTCATAGGACTAAG-CGAAAACGCTATAGCCTTCGTCAAGTTTA 196 Query 1481 TCTACGACAAGGACAATAAGTTCGTGGT-CGGAGATGATCATGGGAGCAAGACATTACTT 1539 | ||| |||| ||| | | | || | ||||||||||||||||| |||||| ||| || Sbjct 197 TGTACTACAAAGACGCTCGGATGGTC-TACGGAGATGATCATGGGAACAAGACCTTATTT 255 Query 1540 GGA-GTTGATGAGTTTGAGTTGGAGCATCCAGATGAATACCTGATATCTGTGGAGGGTAG 1598 | | | | ||||| || || | |||||| |||||| | | || ||||||||||| Sbjct 256 G-ATGACAAAGAGTTCGAACTGAATTATCCAGTTGAATATGTCACGTCAGTGGAGGGTAG 314 Query 1599 TTATGATGTAGTAGATGGAAGTGAATCCGAAGTTATA-CTCATGCTTAGGTTCAAGACCA 1657 |||||| | | || || | |||| |||||| | |||||||||||||||||||| Sbjct 315 TTATGA---A--A-AT--AA---A-TCCGGGGTTATAAC-CATGCTTAGGTTCAAGACCA 361 Query 1658 ATATGCGAACCTCTCAAGTCTTTGGACTCGACACAACATCAAGCTTC-ATACTCG 1711 | | | ||||| || || | ||||| ||| |||||||| || ||| | ||||| Sbjct 362 ACAACCAAACCTTTCCAGACATTGGAATCGGTACAACATCTAGTTTCGA-ACTCG 415 > Ahg923717 jgi|Araly1|923717|scaffold_104998.1 Length=574 Score = 97.1 bits (52), Expect = 4e-19 Identities = 205/275 (75%), Gaps = 26/275 (9%) Strand=Plus/Plus Query 675 TTTCGAGATTAACCATCTCGACAATGAATATATGGTATCTGTTGAGGGTTATTATGACGA 734 ||| |||||||||||| ||||||| |||||| || | ||| | || ||||| ||||| | Sbjct 282 TTT-GAGATTAACCATATCGACAAGGAATATCTGCTGTCTATCGATGGTTACTATGATG- 339 Query 735 AGGTGATTC-GGGGATCATTCAGGGAATTCAATTCAGA-ACTAATATCAAGACTTCAGAA 792 | | | || || | ||||||| | | | ||||||| | || || || ||| ||| | | Sbjct 340 A-GACA-TCAGGTG-TCATTCAAGCACTGCAATTCA-ATACCAACATGAAGCCTTGGGCA 395 Query 793 CTGATAGG--A-TA-CAACA--ATGGTAAGAAGTTTTCACTTGCA-GCCAATGGAAAGAA 845 || || || | || || | ||| | ||||||| || ||| | | |||||| || || Sbjct 396 CTTATGGGCTACTATGAAGATGATGCTGTGAAGTTTACAATTGGATG-CAATGGTAATAA 454 Query 846 GATCATTGGG------TTTCATGGATATGCTGACCAGAATCTAAACTCTCTTGGAGCATA 899 |||||||||| ||||||||||| ||||| |||| |||||||||||||||||||| Sbjct 455 GATCATTGGGTTTCATTTTCATGGATACGCTGAGAAGAACCTAAACTCTCTTGGAGCATA 514 Query 900 TTTCACAAC-CTCTCCTTT-TAT-TAAATTGGAAT 931 |||||||| || |||| || ||||||||||| Sbjct 515 TTTCACAATACT-TCCTCGCTACCTAAATTGGAAT 548 > Ahg474323 jgi|Araly1|474323|fgenesh2_kg.1__4277__AT1G52050.1 Length=1015 Score = 65.8 bits (35), Expect = 1e-09 Identities = 47/52 (90%), Gaps = 4/52 (8%) Strand=Plus/Plus Query 1181 CGTCATTGACTTTCAAAACATCAAAAGGGAGAA-CTTCTTCA-ACATTTGGA 1230 |||||||||||||||||||||||||||| |||| || || || ||||||||| Sbjct 787 CGTCATTGACTTTCAAAACATCAAAAGGAAGAATCT-CT-CAGACATTTGGA 836 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67686365365 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5