BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G60170.1
Length=1819
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475301 jgi|Araly1|475301|fgenesh2_kg.2__431__AT1G60170.1 2468 0.0
Ahg342933 jgi|Araly1|342933|fgenesh1_pg.C_scaffold_3002696 880 0.0
Ahg331322 jgi|Araly1|331322|fgenesh1_pm.C_scaffold_8000665 878 0.0
Ahg316028 jgi|Araly1|316028|fgenesh1_pm.C_scaffold_2001061 342 5e-93
Ahg339268 jgi|Araly1|339268|fgenesh1_pg.C_scaffold_2001367 333 3e-90
> Ahg475301 jgi|Araly1|475301|fgenesh2_kg.2__431__AT1G60170.1
Length=1771
Score = 2468 bits (1336), Expect = 0.0
Identities = 1584/1698 (93%), Gaps = 39/1698 (2%)
Strand=Plus/Plus
Query 139 ATGGCAACTCTTGAAGATTCTTTCCTTGCTGAT-TTGGACGAGTTATCTGACAATGAAGC 197
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 96 ATGGCAACTCTTGAAGATTCTTTCCTTGCTGATCTT-GACGAGTTATCTGACAATGAAGC 154
Query 198 AGAATTGGACGAGAATGATGGTGATGTTGGAAAGGAAGAAGAAGATGTTGATATGGATAT 257
||||||||||||||| |||||||||||||| ||||| |||||||||||||| ||||||||
Sbjct 155 AGAATTGGACGAGAACGATGGTGATGTTGGCAAGGAGGAAGAAGATGTTGACATGGATAT 214
Query 258 GGCTGATTTAGAGACACTTAACTATGATGATCTCGATAATGTTTCTAAGCTGCAGAAGAG 317
||| |||||||||||||||||||| ||||||||||||| |||||||||||| ||||| ||
Sbjct 215 GGCGGATTTAGAGACACTTAACTACGATGATCTCGATAGTGTTTCTAAGCTTCAGAAAAG 274
Query 318 TCAGAGATATGCTGATATTATGCATAAAGTAGAGGAGGCTCTTGGGAAAGATTCTGATGG 377
|||||||||| ||||||||||||| |||||||||||||||||| | |||
Sbjct 275 TCAGAGATATACTGATATTATGCAAAAAGTAGAGGAGGCTCTT------G-----GAT-- 321
Query 378 AGCTGAGAAAGGAACTGTCTTGGAAGATGATCCTGAGTATAAGCTTATTGTGGATTGTAA 437
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 322 --CTGAGAAAGGAACTGTGTTGGAAGATGATCCTGAGTACAAGCTTATTGTGGATTGTAA 379
Query 438 TCAGCTTTCGGTCGATATTGAGAATGAAATCGTTATTGTCCACAACTTTATCAAAGACAA 497
|||||| || || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 380 TCAGCTCTCTGTTGATATTGAGAATGAAATCGTTATTGTCCACAACTTTATCAAAGACAA 439
Query 498 GTACAAGCTTAAGTTTCAAGAGCTTGAGTCGTTGGTTCATCACCCTATTGACTATGCATG 557
||||||||||||||||||||||||||||||||||||| ||||||| ||||| || || ||
Sbjct 440 GTACAAGCTTAAGTTTCAAGAGCTTGAGTCGTTGGTTAATCACCCAATTGATTACGCCTG 499
Query 558 TGTTGTGAAGAAGATTGGGAATGAGACGGATTTGGCTCTTGTTGATCTCGCTGACCTTCT 617
||||||||| |||||||| ||||||||||||||| ||||||||||||| |||||||||||
Sbjct 500 TGTTGTGAAAAAGATTGGCAATGAGACGGATTTGACTCTTGTTGATCTTGCTGACCTTCT 559
Query 618 TCCTTCAGCTATTATCATGGTTGTTTCAGTTACTGCTTTAACTACGAAAGGGAG-TGCAC 676
||| || ||||||||||||||| ||||||||||||||| ||| ||||||||||| | ||
Sbjct 560 TCCATCTGCTATTATCATGGTTATTTCAGTTACTGCTTCAACCACGAAAGGGAGCT-CAT 618
Query 677 TGCCAGAGGATGTTTTGCAAAAGGTGTTAGAGGCTTGTGATCGGGCT-TTAGATCTTGAT 735
||||||||||||| ||||||||||||||||||||||||| |||||| || |||||||||
Sbjct 619 TGCCAGAGGATGTCCTGCAAAAGGTGTTAGAGGCTTGTGACCGGGCTCTT-GATCTTGAT 677
Query 736 TCCGCAAGGAAGAAGGTCCTTGAGTTTGTTGAAAGTAAGATGGGATCTATTGCACCTAAT 795
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 678 TCTGCAAGGAAGAAGGTCCTTGAGTTTGTTGAAAGTAAGATGGGATCTATCGCACCTAAT 737
Query 796 CTTTCTGCTATTGTTGGGAGTGCTGTTGCAGCCAAACTCATGGGGACTGCTGGAGGTTTG 855
||||| | ||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 738 CTTTCCACCATTGTTGGGAGTGCTGTTGCAGCGAAGCTCATGGGGACTGCTGGAGGTTTG 797
Query 856 TCAGCACTTGCTAAAATGCCTGCGTGTAATGTTCAAGTTCTTGGCCACAAGAGGAAGAAC 915
||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 798 TCAGCACTTGCTAAAATGCCTGCCTGTAATGTTCAAGTTCTTGGCCTCAAGAGGAAGAAT 857
Query 916 CTTGCTGGGTTTTCTTCTGCAACGTCTCAGTCCCGTGTGGGTTATCTGGAGCAGACAGAG 975
||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 858 CTTGCTGGGTTCTCGTCTGCAACGTCACAGTCCCGTGTGGGTTATCTGGAGCAGACAGAG 917
Query 976 ATTTACCAAAGCACGCCTCCTGGACTTCAGGCTCGCGCTGGCAGGCTCGTGGCTGCAAAA 1035
|||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 918 ATTTTTCAAAGCACGCCTCCTGGACTTCGGGCTCGCGCTAGCAGGCTCGTGGCTGCAAAA 977
Query 1036 TCAACTTTGGCAGCAAGAGTTGATGCTACTAGAGGGGATCCGTTAGGGATAAGTGGAAAA 1095
|| ||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||
Sbjct 978 TCGACTTTGGCAGCAAGAGTTGATGCTACTAGAGGGGACCCGACAGGGACAAGTGGAAAA 1037
Query 1096 GCTTTCAGGGAGGAGATCCGTAAGAAGATTGAGAAATGGCAAGAACCTCCTCCTGCAAGA 1155
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1038 GCTTTCAGGGAGGAGATCCGTAAGAAGATTGAGAAGTGGCAAGAACCTCCTCCTGCAAGG 1097
Query 1156 CAGCCTAAGCCACTTCCTGTTCCTGATTCTGAACCGAAGAAAAGAAGGGGTGGTCGCCGT 1215
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1098 CAGCCTAAGCCGCTTCCTGTTCCTGATTCTGAGCCGAAGAAAAGAAGGGGTGGTCGCCGT 1157
Query 1216 CTAAGAAAAATGAAAGAAAGGTAT-CAAGTAACAGATATGAGGAAGCTGGCCAACAGAAT 1274
|||||||||||||||||||||||| || |||||||| |||||||||||||||||||| ||
Sbjct 1158 CTAAGAAAAATGAAAGAAAGGTATGCA-GTAACAGACATGAGGAAGCTGGCCAACAGGAT 1216
Query 1275 GGCGTTTGGTACACCTGAAGAGAGCTCCCTCGGTGATGGACTAGGAGAAGGTTATGGAAT 1334
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1217 GGCGTTTGGTACACCTGAAGAGAGCTCCCTAGGTGATGGACTAGGAGAAGGTTATGGAAT 1276
Query 1335 GCTTGGCCAGGCAGGAAGCAACAGGCTGCGAGTATCCAGTGTTCCGAGCAAGCTTAAGAT 1394
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1277 GCTTGGCCAGGCAGGTAGCAACAGGCTGCGAGTATCCAGTGTTCCGAGCAAGCTTAAAAT 1336
Query 1395 TAATGCTAAGGTCGCCAAAAAGCTTAAAGAAAGGCAGTATGCGGGTGGTGCGACTACCTC 1454
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1337 TAATGCTAAGGTCGCGAAAAAGCTTAAAGAAAGGCAGTATGCAGGTGGTGCGACTACCTC 1396
Query 1455 TGGTTTGACATCGAGCCTGGCTTTCACTCCTGTGCAGGGAATAGAGTTGTGCAATCCTCA 1514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1397 TGGTTTGACATCGAGCCTGGCTTTCACTCCTGTGCAGGGAATAGAGTTGTGCAATCCTCA 1456
Query 1515 GCAGGCTTTAGGATTAGGAAGTGGGACTCAAAGCACTTACTTCTCAGAGTCAGGAACCTT 1574
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1457 GCAAGCTTTAGGATTAGGCAGTGGGACTCAAAGCACTTACTTCTCAGAGTCAGGAACCTT 1516
Query 1575 CTCGAAGCTGAAGAAGATCTAAAATATGGAAGACAGAGATACAAG-TCTTGAAAAGCCGA 1633
|||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||
Sbjct 1517 CTCGAAGCTGAAGAAGATCTAAAATATGCAAGACAGAGATACAAGCTGTTGAAAAGCCGA 1576
Query 1634 GCACTA-AA-A----G-TGTAAAAATGAAACAAAGGTGGAAAGAAACTGCTTTCTCTATC 1686
|||||| || | | |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1577 GCACTAGAAGATAATGGTGTATAAATGAAACAAAGGTGGAAAGAAACTGCTTTCTCTATC 1636
Query 1687 TCATGTCTGTTTTAAGGTTTCTT-CGGTCACTTAAGAGACAAAAGGCATTGTTTTGATCA 1745
|| ||||||||||||||||||| || ||||| |||||||||||||||||||||||||||
Sbjct 1637 TC--GTCTGTTTTAAGGTTTCTTTCG-TCACTAAAGAGACAAAAGGCATTGTTTTGATCA 1693
Query 1746 CTCTTTGGAAACGTTTTATAAATTTTATTTTTGTATTAGAGCCATAC---C-TAAAGATC 1801
||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||
Sbjct 1694 CTCTTTGGAAACGTTTTATAAATTTTATTTTTGTACTAGAGCCATACATACCTAAAGATC 1753
Query 1802 CATCTTCTTATTACCATC 1819
||||||||||| ||||||
Sbjct 1754 CATCTTCTTATCACCATC 1771
Score = 145 bits (78), Expect = 1e-33
Identities = 92/98 (94%), Gaps = 3/98 (3%)
Strand=Plus/Plus
Query 1 ATTCCTCTTCGCCTTCCTAAGGAAAAAACACTAGTCGCTCGCTGCTCTTCAATTTTCTTC 60
||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||
Sbjct 1 ATTCCTCTTCGCCTTCCAAAGG--AAAACACTAGTCGCTCGCTGCTCTTCAATTT-CTTC 57
Query 61 TCGAATCTAATCGATTGATTTCTCCTTCGATTCTTCAG 98
|||||||| ||||||||||||||||||||||||||||
Sbjct 58 TCGAATCTGGTCGATTGATTTCTCCTTCGATTCTTCAG 95
> Ahg342933 jgi|Araly1|342933|fgenesh1_pg.C_scaffold_3002696
Length=1335
Score = 880 bits (476), Expect = 0.0
Identities = 809/964 (84%), Gaps = 46/964 (5%)
Strand=Plus/Plus
Query 647 TTACTGCTTTAACTACGAAAGGGAGTGCACTGCCAGAGGATGT-T-TTGCAAAAGGTGTT 704
||||||||||||| || ||||||| |||| ||||| | || | | | |||| |||
Sbjct 404 TTACTGCTTTAACCACAAAAGGGAAACCACTTCCAGA-TA-GTATCCTACGAAAGACGTT 461
Query 705 AGAGGCTTGTGATCGGGCT-TTAGATCTTGATTCCGCAAGGAAGAAGGTCCTTGAGTTTG 763
||| |||||||||| ||| || ||||||||||| |||||||| ||||| ||||||||||
Sbjct 462 AGACGCTTGTGATCACGCTATT-GATCTTGATTCGGCAAGGAAAAAGGTTCTTGAGTTTG 520
Query 764 TTGAAAGTAAGATGGGATCTATTGCACCTAATCTTTCTGCTATTGTTGGGAGTGCTGTTG 823
||||||| |||||||||||||| ||||| ||||| ||||||||||| |||||||||||||
Sbjct 521 TTGAAAGAAAGATGGGATCTATCGCACCAAATCTCTCTGCTATTGTCGGGAGTGCTGTTG 580
Query 824 CAGCCAAACTCATGGGGACTGCTGGAGGTTTGTCAGCACTTGCTAAAATGCCTGCGTGTA 883
||||||| || |||| |||||||||||||| || |||||||| || |||||||| ||||
Sbjct 581 CAGCCAAGCTTTTGGGAACTGCTGGAGGTTTATCGGCACTTGCGAACATGCCTGCTTGTA 640
Query 884 ATGTTCAAGTTCTTGGCCACAAGAGGAAGAACCTTGCT-GGGTTTTCTTCTGCAACGTCT 942
|| ||| ||||||||||||||| |||||||||| || | || || ||| |||||| |||
Sbjct 641 ATCTTCTAGTTCTTGGCCACAACAGGAAGAACCATG-TCGGATTCTCTACTGCAATGTCA 699
Query 943 CAGTCCCGTGTGGGTTATCTGGAGCAGACAGAGATTTACCAAAGCACGCCTCCTGG-ACT 1001
||||| |||| ||||||| |||||||||||||||||| ||||||||||||||| || |||
Sbjct 700 CAGTCTCGTGCGGGTTATTTGGAGCAGACAGAGATTTTCCAAAGCACGCCTCC-GGAACT 758
Query 1002 TCAGGCT-CGCGCTGGCAGGCTCGTGGCTGCAAAATCAACTTTGGCAGCAAGAGTTGATG 1060
||| | |||||| |||| ||| ||||| ||||||| |||||||||||||||||||| |
Sbjct 759 TCA-AATGCGCGCTAGCAGACTCTTGGCTTCAAAATCGACTTTGGCAGCAAGAGTTGACG 817
Query 1061 CTACTAGAGGGGATCCGT-TAGGGATAAGTGGAAAAGCTTTCAGGGAGGAGATCCGTAAG 1119
|||||||||| ||||| | | || | || || |||||||| |||||||| ||||| |||
Sbjct 818 CTACTAGAGGAGATCCATCT-GGAACAAACGGGAAAGCTTTGAGGGAGGAAATCCGCAAG 876
Query 1120 AAGATTGAGAAATGGCAAGAACCTCCTCCTGCAAGACAGCCTAAGCCACTTCCTGTTCCT 1179
|| ||||| || |||||||||||||| |||||||| || | ||||||||||| |||||||
Sbjct 877 AATATTGACAAGTGGCAAGAACCTCCACCTGCAAGGCAACGTAAGCCACTTCATGTTCCT 936
Query 1180 GATTCTGAACCGAAGAAA-AGAAGGGGTGGTCGCCGTCTAAGAAAAATGAAAGAAAGGTA 1238
||||||| || || ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 937 TATTCTGAGCCTAA-AAAGAGAAGGGGTGGTCGCCGTCTAAGAAAAATGAAAGAAAGGTA 995
Query 1239 TCAAGTAACAGATATGAGGAAGCTGGCCAACAGAATGGCGTTTGGTACACCTGAAGAGAG 1298
|||||| ||||| || || |||||||||||||| ||||||||||||||||||||||||||
Sbjct 996 TCAAGTGACAGACATAAGAAAGCTGGCCAACAGGATGGCGTTTGGTACACCTGAAGAGAG 1055
Query 1299 CTCCCTCGGTGATGGACTAGG-AGAAGGTTATGGAATGCTTGGCCAGGCAGGAAGCAACA 1357
|||||| ||||||||| |||| | || |||||||||||||| ||||| || ||||| |
Sbjct 1056 CTCCCTAGGTGATGGATTAGGTATC-GGATATGGAATGCTTGGTCAGGCTGGGAGCAATA 1114
Query 1358 GGCTGCGAGTATCCAGTGTTCCGAGCAAGCTTAA-GATTAATGCTAAGGTCGCCAAAAAG 1416
||||||| | || ||| ||||||||| || | |||||||||||||||||||||||
Sbjct 1115 GGCTGCG--T-----GT-TTC-GAGCAAGCTGAAAG-TTAATGCTAAGGTCGCCAAAAAG 1164
Query 1417 CTTAAAGAAAGGCAGTATG-CGGGTGGTGCGACTACCTCTGGTTTGAC-A--TCGAGCCT 1472
| || |||| | | |||||| | ||||||||||||||||| | || || ||
Sbjct 1165 C-----GA----CAGT-TCACAGGTGGTTCTACTACCTCTGGTTTGACGACATCAAGTCT 1214
Query 1473 GGCTTTCACTCCTGTGCAGGGAATAGAGTTGTGCAATCCTCAGCAGGCTTTAGGATTAGG 1532
|||||| |||| |||||| |||||||||||||||||||||||| | | ||||||||||
Sbjct 1215 GGCTTTTACTCTTGTGCAAGGAATAGAGTTGTGCAATCCTCAG--G-CATTAGGATTAGT 1271
Query 1533 AAGTGGGACTCAAAGCACTTACTTCTCAGAGTCAGGAACCTTCTCGAAGCTGAAGAAGAT 1592
||| ||| |||||||||||||||||||||||| ||||| ||||| || || ||||||||
Sbjct 1272 CAGTTGGATTCAAAGCACTTACTTCTCAGAGTCGGGAACTTTCTCCAAACTCAAGAAGAT 1331
Query 1593 CTAA 1596
|||
Sbjct 1332 TTAA 1335
> Ahg331322 jgi|Araly1|331322|fgenesh1_pm.C_scaffold_8000665
Length=1368
Score = 878 bits (475), Expect = 0.0
Identities = 791/943 (84%), Gaps = 24/943 (3%)
Strand=Plus/Plus
Query 405 TGATCCTGAGTATAAGCTTATTGTGGATTGTAATCAGCTTTCGGTCGATATTGAGAATGA 464
||||||||| || || || || || ||||| |||||||| || || ||||||||||| ||
Sbjct 222 TGATCCTGAATACAAACTAATCGTAGATTGCAATCAGCTGTCAGTTGATATTGAGAACGA 281
Query 465 AATCGTTATTGTCCACAACTTTATCAAAGACAAGTACAAG-CTTAAGTTTCAAGAGCTTG 523
|| || || ||||||||||||||| ||||||||| | | |||||| ||||||||||
Sbjct 282 GATAGTCATCGTCCACAACTTTATCCGCGACAAGTAC-GGACGTAAGTTCCAAGAGCTTG 340
Query 524 AGTCGTTGGTTCATCACCCTATTGACTATGCATGTGTTGTGAAGAAGATTGGGAATGAGA 583
||||| | | ||| |||| || || ||||| |||||||||| || ||||| |||||||
Sbjct 341 AGTCGCTAATACATGACCCAATCGATTATGCCCGTGTTGTGAAAAAAATTGGCAATGAGA 400
Query 584 CGGATTTGGCTCTTGTTGATCTCGCTGACCTTCTTC--CTT----CAGCTATTATCATGG 637
| ||||| | |||||| |||| | |||||||||| ||| |||| | ||| ||
Sbjct 401 CAGATTTAACCCTTGTTAATCTGGAAGACCTTCTTCTTCTTAAACCAGCGACTATTAT-T 459
Query 638 T-TGTTTCAGTTACTGCTTTAACTACGAAAGGGAGTGCACTGCCAGAGGATGTTTTGCAA 696
| ||||||| ||||||||||||| |||||||||| | || ||||||| ||| | | |||
Sbjct 460 TCTGTTTCACTTACTGCTTTAACCACGAAAGGGAATCCATTGCCAGATGATATCCTACAA 519
Query 697 AAGGTGTTAGAGGCTTGTGATCGGGCT-TTAGATCTTGATTCCGCAAGGAAGAAGGTCCT 755
||| |||||| ||||||||||||||| ||| ||||||||||||||||||||||||| ||
Sbjct 520 AAGACGTTAGACGCTTGTGATCGGGCTCTTA-ATCTTGATTCCGCAAGGAAGAAGGTTCT 578
Query 756 TGAGTTTGTTGAAAGTAAGATGGGATCTATTGCACCTAATCTTTCTGCTATTGTTGGGAG 815
||| ||| |||||||||||||||||| ||| ||||| ||||||||||| ||||| |||||
Sbjct 579 TGACTTTCTTGAAAGTAAGATGGGATATATCGCACCAAATCTTTCTGCCATTGTCGGGAG 638
Query 816 TGCTGTTGCAGCCAAACTCATGGGGACTGCTGGAGGTTTGTCAGCACTTGCTAAAATGCC 875
|||||||||||||| |||||||| |||||||||||||| | |||||||| ||||||||
Sbjct 639 CGCTGTTGCAGCCAAGCTCATGGGAACTGCTGGAGGTTTAACGGCACTTGCAAAAATGCC 698
Query 876 TGCGTGTAATGTTCAAGTTCTTGGCCACAAGAGGAAGAACCTTG-CTGGGTTTTCTTCTG 934
||| |||||||||| ||| ||||||||||||||||||||||||| | || || ||| |||
Sbjct 699 TGCCTGTAATGTTCTAGTACTTGGCCACAAGAGGAAGAACCTTGAC-GGATTCTCTACTG 757
Query 935 CAACGTCTCAGTCCCGTGTGGGTTATCTGGAGCAGACAGAGATTTACCAAAGCACGCCTC 994
||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 758 CAACGTCACAGTCCCGTGTGGGTTATCTGGAGCAGACAGAGATTTTTCAAAGCACGCCTC 817
Query 995 CTGGACTTCAGGCT-CGCGCTGGCAGGCTCGTGGCTGCAAAATCAACTTTGGCAGCAAGA 1053
||||||||| | | |||||| |||||||| ||||| ||||||| |||||||| ||||||
Sbjct 818 CTGGACTTC-GAATGCGCGCTAGCAGGCTCTTGGCTTCAAAATCGACTTTGGCGGCAAGA 876
Query 1054 GTTGATGCTACTAGAGGGGATCCGT-TAGGGATAAGTGGAAAAGCTTTCAGGGAGGAGAT 1112
||||| ||||||||||| ||| | | | || | || || |||||||| |||||| | ||
Sbjct 877 GTTGACGCTACTAGAGGAGATGCATCT-GGAACAAACGGGAAAGCTTTGAGGGAGCAAAT 935
Query 1113 CCGTAAGAAGATTGAGAAATGGCAAGAACCTCCTCCTGCAA-GACAGCCTAAGCCACTTC 1171
||| ||||| ||||| || |||||||||| |||||||| || | || |||| ||||||||
Sbjct 936 CCGCAAGAATATTGACAAGTGGCAAGAACGTCCTCCTGGAAAG-CAACCTACGCCACTTC 994
Query 1172 CTGTTCCTGATTCTGAACCGAAGAA-AAGAAGGGGTGGTCGCCGTCTAAGAAAAATGAAA 1230
|||||||| ||||||| || || || || |||||||||||||||||||||||||| ||||
Sbjct 995 CTGTTCCTTATTCTGAGCCTAAAAAGAA-AAGGGGTGGTCGCCGTCTAAGAAAAACGAAA 1053
Query 1231 GAAAGGTATCAAGTAACAGATATGAGGAAGCTGGCCAACAGAATGGCGTTTGGTACACCT 1290
|||||||||||||| ||||| || |||||| | ||||| || |||||||||||||||||
Sbjct 1054 GAAAGGTATCAAGTGACAGACATAAGGAAGTTAGCCAATAGGATGGCGTTTGGTACACCC 1113
Query 1291 GAAGAGAGCTCCCTCGGTGATGGACTA-GGAGAAGGTTATGGA 1332
||||||||||| || ||||||||| || || || || ||||||
Sbjct 1114 GAAGAGAGCTCTCTGGGTGATGGA-TATGGTGATGGATATGGA 1155
Score = 183 bits (99), Expect = 3e-45
Identities = 142/162 (88%), Gaps = 6/162 (4%)
Strand=Plus/Plus
Query 1438 GGTGGTGCGACTACCTCTGGTTT---GACATCGAGCCTGGCTTTCACTCCTGTGCAGGGA 1494
|||||||| |||||||||||||| |||||| || ||||||||||||| ||||||||||
Sbjct 1210 GGTGGTGCCACTACCTCTGGTTTGAGGACATCAAGTCTGGCTTTCACTCTTGTGCAGGGA 1269
Query 1495 ATAGAGTTGTGCAATCCTCAGCAGGCTTTAGGATTAGGAAGTGGGACTCAAAGCACTTAC 1554
|||||||||||||||||||| || | |||||||||| ||||||| |||||||| ||||
Sbjct 1270 ATAGAGTTGTGCAATCCTCA--AG-CGATAGGATTAGGCAGTGGGAGTCAAAGCAGTTAC 1326
Query 1555 TTCTCAGAGTCAGGAACCTTCTCGAAGCTGAAGAAGATCTAA 1596
||||||||||||||||| ||||| ||| | |||||||| |||
Sbjct 1327 TTCTCAGAGTCAGGAACTTTCTCCAAGTTCAAGAAGATTTAA 1368
> Ahg316028 jgi|Araly1|316028|fgenesh1_pm.C_scaffold_2001061
Length=510
Score = 342 bits (185), Expect = 5e-93
Identities = 416/520 (80%), Gaps = 46/520 (9%)
Strand=Plus/Plus
Query 256 ATGGCTGATTTAGAGACACTTAACTATGATGATCTCGATAATGTTTCTAAGCTGCAGAAG 315
||||| || ||| ||||||||||||| ||||||||||||||| |||| ||||| || ||
Sbjct 1 ATGGCAGACTTAAAGACACTTAACTACGATGATCTCGATAATTTTTCAAAGCTACAAAAA 60
Query 316 AGTCAGAGATATGCTGATATTATGCATA-AAGTAGAGGAGGCTCTTGGGAAAGATTCTGA 374
||||||||||||||||||| || ||| || | | | | | || |||| ||
Sbjct 61 AGTCAGAGATATGCTGATA-TA---ATACAA--A-A--A-G----T-GG-AAGAGGCT-C 103
Query 375 TGGAGCTGAGAAAGGAACTGTCTTGGAAGATGATCCTGAGTATAAGCTTATTGTGGATTG 434
| ||||||||||||||| || ||| | | | | | ||||| || | ||||||
Sbjct 104 T-----TGAGAAAGGAACTGTATT---AGA-G-TAC--A--AGAAGCTAATCGAGGATTG 149
Query 435 TAATCAGCT-TTCGGTCGATATTGAGAATGAAATCGTTATTGTCCACAACTTTATCAAAG 493
||||||||| || || ||||||||||||||||| || || || |||||||||||| |
Sbjct 150 TAATCAGCTCTT-AGTTGATATTGAGAATGAAATAGTCATCGTTCACAACTTTATCCGTG 208
Query 494 ACAAGTACAAG-CTTAAGTTTCAAGAGCTTGAGTCGTTGGTTCATCACCCTATTGACTAT 552
| ||||| || |||||||||||||||||||||||||||||||||||||| || || |||
Sbjct 209 AGAAGTA-TAGACTTAAGTTTCAAGAGCTTGAGTCGTTGGTTCATCACCCAATCGATTAT 267
Query 553 GCAT-GTGTTGTGAAGAAGA-TTGGGAATGAGACGGATTTGGCTCTTGTTGATCTCGCTG 610
| | |||||||||| |||| |||| ||||||| ||| || | ||||||||||| | |
Sbjct 268 GT-TCGTGTTGTGAA-AAGAATTGGCAATGAGATGGACTTAACCCTTGTTGATCTTGAAG 325
Query 611 ACCTTCTTCCTTCAGCTATTATCATGGTTGTTTCAGTTACTGCTTTAACTACGAAAGGGA 670
||||||||| |||||||| ||||||||||||||||||||||||| ||| |||||||| |
Sbjct 326 GCCTTCTTCCATCAGCTATGATCATGGTTGTTTCAGTTACTGCTTCAACCACGAAAGGTA 385
Query 671 GTGCA-CTGCC-AGAGGATGTTTTGC-AAAAGGTGTTAGAGGCTTGTGATCGGGCTTTAG 727
|| ||||| | |||||||| ||| |||| | |||| |||||| |||||||| |||
Sbjct 386 AC-CAACTGCCTA-AGGATGTTCTGCTAAAAAC-GATAGATGCTTGTAATCGGGCTCTAG 442
Query 728 ATCTTGATTCCGCAAGGAAGAAGGTCCTTGAGTTTGTTGA 767
||||||||||||||||||||||||||||||| ||||||||
Sbjct 443 ATCTTGATTCCGCAAGGAAGAAGGTCCTTGACTTTGTTGA 482
> Ahg339268 jgi|Araly1|339268|fgenesh1_pg.C_scaffold_2001367
Length=1713
Score = 333 bits (180), Expect = 3e-90
Identities = 415/521 (80%), Gaps = 46/521 (9%)
Strand=Plus/Plus
Query 238 GAAGATGTTGATATGGATATGGCTGATTTAGAGACACTTAACTATGATGATCTCGATAAT 297
|||||| ||| |||||| ||||| || ||| ||||||||||||| |||||||||||||||
Sbjct 1132 GAAGATATTGGTATGGACATGGCAGACTTAAAGACACTTAACTACGATGATCTCGATAAT 1191
Query 298 GTTTCTAAGCTGCAGAAGAGTCAGAGATATGCTGATATTATGCATA-AAGTAGAGGAGGC 356
|||| ||||| || || ||||||||||||||||||| || ||| || | | | |
Sbjct 1192 TTTTCAAAGCTACAAAAAAGTCAGAGATATGCTGATA-TA---ATACAA--A-A--A-G- 1240
Query 357 TCTTGGGAAAGATTCTGATGGAGCTGAGAAAGGAACTGTCTTGGAAGATGATCCTGAGTA 416
| || |||| || | ||||||||||||||| || ||| | | | | |
Sbjct 1241 ---T-GG-AAGAGGCT-CT-----TGAGAAAGGAACTGTATT---AGA-G-TAC--A--A 1280
Query 417 TAAGCTTATTGTGGATTGTAATCAGCT-TTCGGTCGATATTGAGAATGAAATCGTTATTG 475
||||| || | ||||||||||||||| || || ||||||||||||||||| || || |
Sbjct 1281 GAAGCTAATCGAGGATTGTAATCAGCTCTT-AGTTGATATTGAGAATGAAATAGTCATCG 1339
Query 476 TCCACAACTTTATCAAAGACAAGTACAAG-CTTAAGTTTCAAGAGCTTGAGTCGTTGGTT 534
| |||||||||||| || ||||| || ||||||||||||||||||||||||||||||
Sbjct 1340 TTCACAACTTTATCCGTGAGAAGTA-TAGACTTAAGTTTCAAGAGCTTGAGTCGTTGGTT 1398
Query 535 CATCACCCTATTGACTATGCAT-GTGTTGTGAAGAAGA-TTGGGAATGAGACGGATTTGG 592
|||||||| || || |||| | |||||||||| |||| |||| ||||||| ||| ||
Sbjct 1399 CATCACCCAATCGATTATGT-TCGTGTTGTGAA-AAGAATTGGCAATGAGATGGACTTAA 1456
Query 593 CTCTTGTTGATCTCGCTGACCTTCTTCCTTCAGCTATTATCATGGTTGTTTCAGTTACTG 652
| ||||||||||| | | ||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1457 CCCTTGTTGATCTTGAAGGCCTTCTTCCATCAGCTATGATCATGGTTGTTTCAGTTACTG 1516
Query 653 CTTTAACTACGAAAGGGAGTGCA-CTGCC-AGAGGATGTTTTGC-AAAAGGTGTTAGAGG 709
||| ||| |||||||| | || ||||| | |||||||| ||| |||| | |||| |
Sbjct 1517 CTTCAACCACGAAAGGTAAC-CAACTGCCTA-AGGATGTTCTGCTAAAAAC-GATAGATG 1573
Query 710 CTTGTGATCGGGCTTTAGATCTTGATTCCGCAAGGAAGAAG 750
||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1574 CTTGTAATCGGGCTCTAGATCTTGATTCCGCAAGGAAGAAG 1614
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68295809285
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5