BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G60180.1
Length=891
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932542 jgi|Araly1|932542|scaffold_400530.1 549 1e-155
Ahg320542 jgi|Araly1|320542|fgenesh1_pm.C_scaffold_4000599 540 7e-153
Ahg337885 jgi|Araly1|337885|fgenesh1_pg.C_scaffold_1004450 416 1e-115
Ahg934878 jgi|Araly1|934878|scaffold_402866.1 307 8e-83
Ahg314380 jgi|Araly1|314380|fgenesh1_pm.C_scaffold_1003160 67.6 1e-10
> Ahg932542 jgi|Araly1|932542|scaffold_400530.1
Length=1435
Score = 549 bits (297), Expect = 1e-155
Identities = 686/867 (79%), Gaps = 54/867 (6%)
Strand=Plus/Plus
Query 12 ATGTTCCGTATCTTGGACGTCCCTGAAGAAGTTGTCCCTGCGTTTTTGTGAGCTCTCTGA 71
||| ||| |||||||||| |||||||||||||||| | | ||| |||| | ||||||||
Sbjct 509 ATGCTCCCTATCTTGGACATCCCTGAAGAAGTTGTACTTACGTAATTGTAATCTCTCTGA 568
Query 72 TGAATGTATTGCGAAGATTCTATCTGGT-TGTCCGATTCTCGAAAGCTTAACATTGTCCC 130
||||| || || ||||||||||||||| | ||| |||||||||||||||||||||
Sbjct 569 TGAATCCATGGCTAAGATTCTATCTGGTAT-TCCCCTTCTCGAAAGCTTAACATTGTATT 627
Query 131 ACTGC-ATCTACCTTACGGTTCTTGATCTTAGCAAATCGCTGCGCTTGAGAACATTAGAA 189
|||| || | || | |||||| ||||| || ||||| ||||| |||||||| || |||
Sbjct 628 TCTGCAAT-GAACTAAGGGTTCTGGATCTCAGTAAATCACTGCGTTTGAGAACGTT-GAA 685
Query 190 -AT-AGCCTGCAACA-TTGACAATACGAGGCCAAGGCAGATTGTGGCACCGCATATCCAT 246
|| | || |||| | ||| | || |||||| || ||||||||||| |||||| ||
Sbjct 686 GATAAACC-GCAAAATTTG-GGTTCCGGGGCCAACACATATTGTGGCACCACATATCTAT 743
Query 247 CGTCTCAGACTGA-AAACCTATCAGTCACCATGTGCTTTAGTTGATGTCTCGTCTTTAGA 305
||||||||| ||| ||| || ||||| ||||||| |||| |||||| ||||||||||||
Sbjct 744 CGTCTCAGATTGAGAAA-CTCTCAGTTACCATGTACTTTTGTTGATCTCTCGTCTTTAGC 802
Query 306 TGAAGCTCA-AGTGGACTGTTT-CATTTACTCACATCTAA--AG-ACCCTCGACGCTTAT 360
|||||| | | ||||| ||| || || || || ||| | ||| || | ||| ||
Sbjct 803 CGAAGCT-AGACTGGAC-ATTTGCA-TT-GTCCCA-ATAACCCGAACCTTCAAGGCTGAT 857
Query 361 TTACTTCAAGACAT--T-CTTAAA-ATGCTAGAGAAGTTGCAGAATGCAGAGAAGCTTAT 416
|| ||||||||||| | | |||| ||| |||| ||||||||||||| |||||||||||
Sbjct 858 TTTCTTCAAGACATGGTAC-TAAAGATGTTAGAAAAGTTGCAGAATGTAGAGAAGCTTAC 916
Query 417 TTTTGGGTGCAACATTCTTCAGATTTTATCTCTTGCCGAGGTTTGCGGTCTTCCTTTCCC 476
||||||| | ||| ||||||| ||| ||||||||||||||||| | ||| ||| ||| ||
Sbjct 917 TTTTGGGGGAAACTTTCTTCATATTATATCTCTTGCCGAGGTTCGTGGTGTTCGTTTTCC 976
Query 477 GATGTTCAAGACAAAAG-CTTTGACTCTTGAGACAGAT-ATCTTTCAGTATGTTATTCCT 534
|||||||||| |||| | |||||||| ||||||| | |||||||||||||||||||||
Sbjct 977 GATGTTCAAGGTGAAAGAC-TTGACTCTGGAGACAG-TGATCTTTCAGTATGTTATTCCT 1034
Query 535 GGTATAGAAAGACTTTTACAAAACTCACCTGATTTAAAGACGGTGAC-AGTTCGTC-CAA 592
|||||||||||||| ||||||||||||||| ||||||||| | | || | | || | |||
Sbjct 1035 GGTATAGAAAGACTGTTACAAAACTCACCTAATTTAAAGAAGCTAACTA-TACG-CGCAA 1092
Query 593 GTGATGGCAACATCATGCCGGGTAGGTGTTT-TGA-CAACTACTTGGACTTGCAAGGCTT 650
| ||| ||||| ||| | || ||| || | | | |||||||||| | |||||||||||
Sbjct 1093 GGGATACCAACACCATAC-GGA-AGGAGTATATAAACAACTACTTGAAGTTGCAAGGCTT 1150
Query 651 GAATCCGA-ATCAATGTTGGAGATCAAAAGATGGGGTC-TTTTGGAATAAATCCCGTTCG 708
|| || | ||||||| ||||||||||||||||||||| |||| || || | |||| |
Sbjct 1151 AAA-CCTAGATCAATGCTGGAGATCAAAAGATGGGGTCGTTTTC-AACAATTTACGTTGG 1208
Query 709 AATTTAGGGTCAAAG-AGAGTGACTTTATTCGTGGAACTTATGCTTAAAAACACAAAGA- 766
|||||| ||||||| | | ||||| ||| ||||||||| ||||||||||||||||||
Sbjct 1209 GATTTAGAGTCAAAGCAC-GCGACTTCATTTGTGGAACTTGTGCTTAAAAACACAAAGAC 1267
Query 767 -T--A--TTAGACAAGATGGTCGTTCAGTTAAACGAACATTACCTTAGGTCTAAGTTAAA 821
| | ||||||||||| ||| | | || || || | ||||||| ||| |||||| |
Sbjct 1268 ATTGAAGTTAGACAAGATAGTCATACTTTTGAATGAGCGTTACCTTCGGTTTAAGTTTGA 1327
Query 822 AGAGTT--T-GTTCCAACATTTTCTCA 845
|||| | | ||||||||| |||||||
Sbjct 1328 AGAGCTGGTCGTTCCAACACTTTCTCA 1354
> Ahg320542 jgi|Araly1|320542|fgenesh1_pm.C_scaffold_4000599
Length=918
Score = 540 bits (292), Expect = 7e-153
Identities = 632/791 (80%), Gaps = 44/791 (6%)
Strand=Plus/Plus
Query 12 ATGTTCCGTATCTTGGACGTCCCTGAAGAAGTTGTCCCTGCGTTTTTGTGAGCTCTCTGA 71
||| ||| | |||||||| |||||||||||||||| | | || |||| | |||||||
Sbjct 12 ATGCTCCTTGTCTTGGACATCCCTGAAGAAGTTGTACTTATGTAATTGTAATATCTCTGA 71
Query 72 TGAATGTATTGCGAAGATTCTATCTGGTTGTCCGATTCTCGAAAGCTTAACATTGTCCCA 131
||||| || || ||||||||||||||| |||| |||||||||||||||| ||||
Sbjct 72 TGAATCCATGGCTAAGATTCTATCTGGTAGTCCCCTTCTCGAAAGCTTAACTTTGTATTT 131
Query 132 CTGC-ATCTACCTTACGGTTCTTGATCTTAGCAAATCGCTGCGCTTGAGAACATTAG-AA 189
|||| ||| | || | |||||| ||||| |||||||| ||||| |||||||| || | ||
Sbjct 132 CTGCGATC-AACTAAGGGTTCTGGATCTCAGCAAATCACTGCGTTTGAGAACGTT-GAAA 189
Query 190 AT-AGCCTGCAACA-TTGACAATAC-GAGGCCAAGGCAGATTGTGGCACCGCATATCCAT 246
|| | || |||||| ||| | | | |||||| ||| ||||||||||| |||||||||
Sbjct 190 ATAAACC-GCAACATTTG--GGTTCTGGGGCCAACGCATATTGTGGCACCACATATCCAT 246
Query 247 CGTCTCAGACTGA-AAACCTATCAGTCACCATGTGCTTTAGTTGATGTCTCGTCTTTAGA 305
||||||||| ||| ||| || ||||| ||||||| |||| ||| || ||||||||||||
Sbjct 247 CGTCTCAGATTGACAAA-CTCTCAGTTACCATGTACTTTTGTTAATCTCTCGTCTTTAGC 305
Query 306 TGAAGCTCA-AGTGGACTGTTT-CATTTACTCACATCTAA--AG-ACCCTCGACGCTTAT 360
|||||| | | ||||| ||| || || || || ||| | | | |||| ||| ||
Sbjct 306 CGAAGCT-AGACTGGAC-ATTTGCA-TT-GTCCCA-ATAACCGGAATCTTCGAGGCTGAT 360
Query 361 TTACTTCAAGACAT--T-CTTAAA-ATGCTAGAGAAGTTGCAGAATGCAGAGAAGCTTAT 416
|| ||||||||||| | | |||| ||| |||| ||||||||||||| |||||||||||
Sbjct 361 TTTCTTCAAGACATGGTGC-TAAAGATGTTAGAAAAGTTGCAGAATGTAGAGAAGCTTAC 419
Query 417 TTTTG-GGTGCAACATTCTTCAGATTTTATCTCTTGCCGAGGTTTGCGGTCTTCCTTTCC 475
||||| || | ||| ||||||| ||| ||||||||||||||||| | ||| ||||||| |
Sbjct 420 TTTTGAGG-GAAACTTTCTTCAAATTATATCTCTTGCCGAGGTTCGTGGTGTTCCTTTTC 478
Query 476 CGATGTTCAAGACAAAAGCTTTGACTCTTGAGACAGAT-ATCTTTCAGTATGTTATTCCT 534
||||||||||| |||| |||||| || || |||| | || ||||||||||||||||||
Sbjct 479 CGATGTTCAAGGTGAAAGATTTGACGCTGGAAACAG-TGATATTTCAGTATGTTATTCCT 537
Query 535 GGTATAGAAAGACTTTTACAAAACTCACCTGATTTAAAGACGGTGAC-AGTTCGTC-CAA 592
|||||||||||||| ||||||||||||||||||||||||| | | || | | || | |||
Sbjct 538 GGTATAGAAAGACTGTTACAAAACTCACCTGATTTAAAGAAGCTAACTA-TACG-CGCAA 595
Query 593 GTGATGGCAACATCATGCCGG-GTAGGTGTTTTGACAACTACTTGGACTTGCAAGGCTTG 651
| ||| ||||| ||| | || | ||| | | ||||||||||| | |||||||||||
Sbjct 596 GGGATACCAACACCATACGGGAGAAGGA-TATAAACAACTACTTGCAGTTGCAAGGCTTA 654
Query 652 AATCC-GAATCAATGTTGGAGATCAAAAGATGGGGTCTTTTGGAATAAATC-CCGTTCGA 709
|| || || |||||||||||||||||||||||||||||||| || || | || || |
Sbjct 655 AACCCAGA-TCAATGTTGGAGATCAAAAGATGGGGTCTTTTTCAACAATTTACC-TTGGT 712
Query 710 ATTTAGGGTCAAAG-AGAGTGACTTTATTCGTGGAACTTATGCTTAAAAACACAAAGATA 768
|||||| ||||||| | | ||||| ||| ||||||||| |||||||||||||||||| |
Sbjct 713 ATTTAGAGTCAAAGCAC-GCGACTTCATTTGTGGAACTTGTGCTTAAAAACACAAAGACA 771
Query 769 TTAGACA-AGA 778
||||||| |||
Sbjct 772 TTAGACATAGA 782
> Ahg337885 jgi|Araly1|337885|fgenesh1_pg.C_scaffold_1004450
Length=1287
Score = 416 bits (225), Expect = 1e-115
Identities = 593/765 (78%), Gaps = 48/765 (6%)
Strand=Plus/Plus
Query 143 TTACGGTTCTTGATCTTAGCAAATCGCTGCGCTTGAGAACATTAGAAATAGCCTGCAACA 202
||| |||||||||||| ||||||| | ||| ||||||||||||||||||| | || |||
Sbjct 515 TTAAGGTTCTTGATCTCAGCAAATTGTTGCACTTGAGAACATTAGAAATAAACAGCCACA 574
Query 203 TTGACA-ATACGA-GGCCAAGGCAGATTGTGGCACCGCATATCCATCGTCTCAGACTGAA 260
|| | | | | | |||||| ||||||||| ||||| ||||||||| |||| ||| |||
Sbjct 575 TT-A-AGTTTCTAGGGCCAACGCAGATTGTTGCACCACATATCCATTGTCTTAGATTGAT 632
Query 261 AACCTATCAGTCACCATGTGCTTTAGTTGATGTCTCGTCTTTAGA-TGAAGCTCAAGTGG 319
| ||| ||| | ||||||| ||||||||||| ||||||||||| | ||||| || |||
Sbjct 633 AGCCTCTCAATTACCATGTACTTTAGTTGATATCTCGTCTTTA-ACCGAAGCGAAACTGG 691
Query 320 ACTGTTT-CATTTACTC-ACATCTAAAGACCCTCGACGCT--TATT--T--ACTTCAAGA 371
|| ||| ||| | || | | | ||| | || | ||| | || | ||||||||
Sbjct 692 AC-ATTTGTATTAAATCAAGAGAT-GAGATCTTCAAGGCTGATTTTCCTCAACTTCAAGC 749
Query 372 CAT--T-CTTA-AAATGCTAGAGAAGTTGCAGAATGCAGAGAAGCTTATTTTTGGGT-GC 426
||| | | || | ||||| || || | ||||||| |||||||| | |||| ||| |
Sbjct 750 CATGGTGC-TAGAGATGCTGGAAAAACTACAGAATGTTGAGAAGCTAACTTTT-GGTGGA 807
Query 427 AACATTCTTCAGATTTTATCTCTTGCCGAG-GTTTGCGGTCTTCCTTTCCCGATGTTCAA 485
||| |||||||||||||||||||||| | | ||| | ||| ||||||| |||||||| ||
Sbjct 808 AACTTTCTTCAGATTTTATCTCTTGCTG-GTGTTCGTGGTGTTCCTTTTCCGATGTTAAA 866
Query 486 -GACAAAAGCTTTGACTCTTGAGACAGAT-ATCTTTCAGTATGTTATTCCTGGTATAGAA 543
| ||||| |||||| |||||| || | | ||||||||||||||||||||||||||||||
Sbjct 867 GGTCAAAA-CTTTGATTCTTGAAAC-GGTAATCTTTCAGTATGTTATTCCTGGTATAGAA 924
Query 544 AGACTT-TTACAAAACTCACCTGATTTAAAGACGGTGACAGTTCGTCCAAGTGATGGCAA 602
||| || |||||||||||| ||| ||||||| | | | || || |||| ||| ||||
Sbjct 925 AGA-TTGTTACAAAACTCATTTGAATTAAAGAAGCTAATGGTACGAGCAAGGGATTGCAA 983
Query 603 CATCATGCCGGGTAGGTGTTTTGACAACT-ACTTGGACTTGCAAGGCTTGAATCCGAATC 661
|| ||| ||||| || | || ||||| | ||||||||| | ||||||| |||| || |
Sbjct 984 CACCATACCGGGGAGTTACTT-GACAAATTACTTGGACTCACTAGGCTTGGATCCAAA-C 1041
Query 662 A-ATGTTGGAGATCAAAAGATGGG--G-TC-TTTTGGAATAAATCCCGTTCG-AATTTAG 715
| |||||||||||| ||||||||| | || ||||| || ||||||| | || ||| |||
Sbjct 1042 ATATGTTGGAGATCGAAAGATGGGAAGGTCATTTTG-AACAAATCCCAT-CGGAATATAG 1099
Query 716 GGTCAAAG-AGAGTGACTTTATTCGTGGAACTTATGCTTAAAAACACAAAGATATTAGAC 774
| ||||| | || |||| ||| | ||| ||| ||||||||||||||||| |||||
Sbjct 1100 AGACAAAGCAT-GTTACTTCGTTCATAGAATTTACGCTTAAAAACACAAAGAGCTTAGAT 1158
Query 775 AAGATGGTCGTTCAGTTAAACGAACATTACCTTAGGTCTAAGTTAAAAGAGTTTGTTCCA 834
||||||||||| ||||| |||||| |||| |||| | || ||| ||||| || || |||
Sbjct 1159 AAGATGGTCGTACAGTTGGACGAACGTTACATTAGTTTTAGGTTTAAAGACTTGGTACCA 1218
Query 835 ACA-TT-TTCTCAGAAGAATAATGTCTTGATTGTGCTCTCAACCA 877
||| || ||| || | |||||||||| |||| |||||||||||
Sbjct 1219 ACACTTATTCCCA-AC-AATAATGTCTCCATTGGGCTCTCAACCA 1261
> Ahg934878 jgi|Araly1|934878|scaffold_402866.1
Length=4121
Score = 307 bits (166), Expect = 8e-83
Identities = 457/593 (77%), Gaps = 38/593 (6%)
Strand=Plus/Plus
Query 4 ATTCCTAGATGTTCCGTATCTTGGACGTCCCTGAAGAAGT-TGTCCCTGCGTTTTTGTGA 62
||||| | ||| || || || ||||| ||||||||||| | ||||| || | | ||| |
Sbjct 537 ATTCCCAAATGCTCTGTGTCGTGGACATCCCTGAAGAA-TATGTCCTTGTGGTGTTGCAA 595
Query 63 GCTCTCTGATGAATGTATTGCGAAGATTCTATCTGGTTGTCCGATTCTCGAAAGCTTAAC 122
|||||||||||||| ||||| ||||| |||| |||||||||||||||||||||||||||
Sbjct 596 GCTCTCTGATGAATCCATTGCTAAGATCCTATTTGGTTGTCCGATTCTCGAAAGCTTAAC 655
Query 123 ATTGTCCCACTGCATCTACCTTACGGTTCTTGATCTTAGCAAATCGCTGCG-CTTGAGAA 181
||||| ||||| | || | |||||||||||| |||||||| | ||| || || ||
Sbjct 656 ATTGTGTTTCTGCAAGGAACTGAAGGTTCTTGATCTCAGCAAATCACCGCGTCT-GATAA 714
Query 182 CATTAGAAATAGCCTG-CAACATTGACAATACGAGGCCAAGGCAGATTGTGGCACCGCAT 240
|||||| ||| | | ||| || ||| || |||||||| |||| |||||||| |||
Sbjct 715 CATTAGTAATTTA-TAACGACAGTGTGAATCCGGGGCCAAGGAAGATCGTGGCACCACAT 773
Query 241 ATCCATCGTCTCAGACTGAAAACCTA-TCAGTCACCATGTGCTTTA---GTTGATGTCTC 296
||||||||||||||| |||||| | | ||||| |||||||| |||| |||||||||||
Sbjct 774 ATCCATCGTCTCAGATTGAAAAAC-ACTCAGTTACCATGTGATTTATTAGTTGATGTCTC 832
Query 297 GTCTTTAGAT-GAAGCTCAAGTGGACTGTTT-CATTTA-CTCAC-ATC-T-AAAGACCCT 350
|||||| | |||||| || | ||| || | | || ||| | | | | ||| || |
Sbjct 833 ATCTTTA-ACCGAAGCTAAACTAGACA-TTAGC-TATAACTC-CTACCGTGAAAAAC--T 886
Query 351 CGA-CGCTTATTTACTTCA-AGACAT--T-CTTAAA-ATGCTAGAGAAGT-TGCAGAATG 403
|| |||| |||||||||| | ||| | || | | | |||||| |||| | |||||||
Sbjct 887 -GAACGCTGATTTACTTCACAT-CATGGTGCT-AGAGAGGCTAGACAAGTGT-CAGAATG 942
Query 404 CAGAGAAGCTTATTTTTGGGTGCAA-CATTCTTC-AGATTTTATCTCTTGCCGAGGTTTG 461
||||||||||| ||| ||| | || | |||| | |||||||||||||||||||| | |
Sbjct 943 TAGAGAAGCTTACTTTGGGG-GAAAGCTTTCT-CGAGATTTTATCTCTTGCCGAGCTCCG 1000
Query 462 CGGTCTTCCTTTCCCGATGTTCAAGACAAAAGCTTTGACTCTTGAGACAGATATCTTTCA 521
||| ||||||| || | |||||| | |||||| || ||||||||| |||| |||
Sbjct 1001 TGGTGTTCCTTTTCCAAACTTCAAGGTTAGAGCTTTAACGCTTGAGACACCGATCTCTCA 1060
Query 522 GTATGTTATTCCTGGTATAGAAAGACTTTTACAAAACTCACCTGATTTAAAGA 574
||||| ||||||||||||| ||| | |||||||||| ||||| |||||||
Sbjct 1061 CTATGTAATTCCTGGTATAGTAAGGGTGCTACAAAACTCTCCTGAATTAAAGA 1113
> Ahg314380 jgi|Araly1|314380|fgenesh1_pm.C_scaffold_1003160
Length=1062
Score = 67.6 bits (36), Expect = 1e-10
Identities = 50/57 (88%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 65 TCTCTGATGAATGTATTGCGAAGATTCTATCTGGTTGTCCGATTCTCGAAAGCTTAA 121
|||||||||||| | ||| || ||| | ||||||||||||||||||||||||||||
Sbjct 455 TCTCTGATGAATCCAATGCTAATATTATTTCTGGTTGTCCGATTCTCGAAAGCTTAA 511
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33014446122
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5