BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G60200.1
Length=2896
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925037 jgi|Araly1|925037|scaffold_200598.1 4204 0.0
> Ahg925037 jgi|Araly1|925037|scaffold_200598.1
Length=2884
Score = 4204 bits (2276), Expect = 0.0
Identities = 2704/2898 (93%), Gaps = 79/2898 (3%)
Strand=Plus/Plus
Query 42 ACTCCCATGGCCGACGAATCTTCTTCTCCGGCCACGGGGGATCCCAATTCACAGAAACCA 101
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 18 ACTCCCATGGCCGACGAATCTTCTTCTCCGGCCACGGGGGATCTCAATTCTCAGAAACCA 77
Query 102 GAATCCACTACTCCGATTTCAATTCCCAATCCAAATCCCAATCCTTCACTAACACCACCG 161
||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 78 GAAGCCACTACTCCGATTCCAATTCCCAATCCAAATCCCAATCCTTCACTAACACCACCA 137
Query 162 CCGCCTCAACAACATTCGCAACCACCAGTCGCTCCTCTGGTTCCACCTGGTCCGCCTTAT 221
||||||||||| ||| ||||||||| ||| ||| ||||| |||| |||||||||||||||
Sbjct 138 CCGCCTCAACACCATACGCAACCACAAGTAGCTGCTCTGATTCCGCCTGGTCCGCCTTAT 197
Query 222 GCTCCTCCGGCTCAGATTCCTAGCTCGCTTCTCCCCACCAATCTCCCGCCGCCACCACCA 281
|||||||| | ||||||||| |||| ||||||||||||||||| |||||||||||||||
Sbjct 198 ACTCCTCCGTCACAGATTCCTGGCTCACTTCTCCCCACCAATCTTCCGCCGCCACCACCA 257
Query 282 TTCCGTCCCGGTATGCAGTTCACTCCCGTTGCGAATTTTCAAAA--C---C-CT--AG-- 331
|||||||||||||||||||||||||||| || |||||||||||| | | || ||
Sbjct 258 TTCCGTCCCGGTATGCAGTTCACTCCCGCTGGGAATTTTCAAAACCCTAGCTCTGGAGTT 317
Query 332 -CT-CT------G-GAGTTC-CT--C--CTCCAGGATCTATGCCTCAGTATC-A----A- 371
|| || | || ||| | | ||||||||||||||||||||||| | |
Sbjct 318 CCTCCTCCCGGCGTGAATTCTATGGCGGTTCCAGGATCTATGCCTCAGTATCAACTGCAG 377
Query 372 ---CCG---CAGCCTGGTATGAGACCTTTCCAGCCTATGGCTAATGGTTATCCCGGAATT 425
||| |||||||||||||| |||| |||||||||||||||||||| ||||||||||
Sbjct 378 CCTCCGAACCAGCCTGGTATGAGGCCTTACCAGCCTATGGCTAATGGTTTTCCCGGAATT 437
Query 426 CATGGTGTTGCTCCTCCTGGTGCCATGCCTCCTCATGGGCTTCTCCGGTATCCTTCTCCA 485
||||||||||||||||| | || | ||||||||||||||||||||||||
Sbjct 438 CATGGTGTTGCTCCTCC---T-CC--G---------GGGCTTCTCCGGTATCCTTCTCCA 482
Query 486 TATCCAACAATGGTTCGTCCTGGATTCATTATGCGGCCGCCTGGTACAATCGGTGCTGTT 545
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 483 TATCCAACAATGGTTCGTCCTGGGTTCATTATGCGCCCGCCTGGTACAATCGGTGCTGTT 542
Query 546 CAACTAGCACCACGACC-CCTTATTCCAGGAATGCCTGGTCTCCGTCCTGTAATGCCTCC 604
||||||||||||||||| | | | || ||||||||||||||||||||||||||||||||
Sbjct 543 CAACTAGCACCACGACCTGC-TGTCCCGGGAATGCCTGGTCTCCGTCCTGTAATGCCTCC 601
Query 605 TATGGTTAGACCGGCTTCTCTTCCTTTTGTAACACCTGCAGAAAAGCCCCAGACCACAAT 664
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 TATGGTTAGACCAGCTTCTCTTCCTTTTGTAACACCTGCAGAAAAGCCCCAGACCACAAT 661
Query 665 TTACATTGGCAAGATAGCTACCGTGGAAAATGACTTTATGATGTCTATTCTTGAGTTTTG 724
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 662 TTACATTGGCAAGATAGCAACCGTGGAAAATGACTTTATGATGTCTATTCTCGAGTTTTG 721
Query 725 TGGCCATGTCAAAAGCTGTTTACGTGCGGAAGATCCTACCACCAAGAAACCTAAAGGTTT 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 TGGCCATGTCAAAAGCTGTTTACGTGCGGAAGATCCTACCACCAAGAAACCTAAAGGTTT 781
Query 785 TGGATTCTATGAATTTGAATCAGCTGAAGGGATTCTCCGCGCAATACGCCTGCTGACCCA 844
||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |
Sbjct 782 TGGATTCTATGAATTTGAATCAGCTGAAGGGATTCTCCGTGCAATACGCCTACTGACCAA 841
Query 845 ACGTACTATAGATGGACAAGAGCTTTTGGTGAATGTTAATCAAGCAACAAAGGAGTATTT 904
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 842 ACGTACTATAGATGGACAAGAACTTTTGGTGAATGTTAATCAAGCAACAAAGGAGTATTT 901
Query 905 GCTAAAATATGTTGAGAAGAAAATAGAGACTGCAAAGAAAGCCAAGGAAAGTCAAG--G- 961
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 902 GCTAAAATATGTTGAGAAGAAAATAGAGACTGCAAAGAAAGCCAAGGAAAGTCAAGCTGT 961
Query 962 A--A-CCAAAGAGAACCAAGCTGAAGGTCCTGAGAGTGAGCAA-GACAAGCTTGAGAGTG 1017
| | || ||||||||||||||||||||||||| ||||||| | || || ||||||||||
Sbjct 962 AGGAACCGAAGAGAACCAAGCTGAAGGTCCTGAAAGTGAGCGACGAAAA-CTTGAGAGTG 1020
Query 1018 CTGATAATGAGACAGGGAAGGATGGAGAATCGAAGATTAAAGAAAACATCGATATTGCGA 1077
|||| |||||||||||||| ||||||||| | |||| |||||||||||| ||||||||||
Sbjct 1021 CTGAAAATGAGACAGGGAAAGATGGAGAACCCAAGAGTAAAGAAAACATTGATATTGCGA 1080
Query 1078 ATTCTGCTGTCCTAACTGATGAAGAAAGGGAAGCAGACAGAGAGGCTATGGAAAAGATTG 1137
||||||| ||| ||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 ATTCTGCGGTCATAAATGACGAAGAAAGGGAAGCAGACAGAGAGGCTATGGAAAAGATTG 1140
Query 1138 AAACTGCTATTGAAGAAAGGTTAAAGTCCAACCCTTTGCCTCCTCCACC---ACCACCAC 1194
||| ||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||
Sbjct 1141 AAAGTGCTATTGAAGAAAGGTTAAAGTCCAACCCTCTGCCTCCACCACCCCCACCACCAC 1200
Query 1195 CTGCTGATGGTTCAGGCATGGAATTTGCTTTCAAATCTAAGGATGGTGACTCCAACACTG 1254
|||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 1201 CTGCTGATCGTTCAGGCATGGAACTTGCTTTCACATCTAAGGATGGTGACTCCAACACTG 1260
Query 1255 ACGTAGCTAGGAGTGATGCCGCAGCAAATGATGTTGAGACTTCTGGAGAACACAATAGGC 1314
|| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 1261 ACATAGCTAGGAGTGATGCCGCAGCAAATGATGTTGAGACTTCTAGAGAACAGAATAGGC 1320
Query 1315 CTGACACAAGCTCACCTGATTGGAGTAAGAGAAATGACCGAAGAAGCAGAGAAAGAGGTG 1374
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 CTGACACAAGCTCTCCTGATTGGAGTAAGAGAAATGACCGAAGAAGCAGAGAAAGAGGTG 1380
Query 1375 AGAAGGAGCAAGAAATGGATAGA-TACGAGAGGGAGGCTGAAAGAGAACGGTCAAGGAAA 1433
| |||||||||||||| |||||| | |||||||||||||||| |||||||| ||||||||
Sbjct 1381 AAAAGGAGCAAGAAATTGATAGACT-CGAGAGGGAGGCTGAACGAGAACGGACAAGGAAA 1439
Query 1434 GAGAGAGAGCAAAGGAGGAAACTTGAGGATGCAGAGCGTGCTTACCAGACTCGTCTTCGA 1493
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 GAGAGGGAGCTAAGGAGGAAACTTGAGGATGCAGAGCGTGCTTACCAGACTCGTCTTCGA 1499
Query 1494 CAATGggaacgaagagaaagagaaaaggagaaggaacgacagtacgagaaggagaaagag 1553
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 CAATGGGAACGCAGTGAAAGAGAAAAGGAGAAGGAACGACAGTACGAGAAGGAGAAAGAG 1559
Query 1554 aaagagaaagagcgcaagaggaaaaaggaaatccgctatgaggaagaagaggaagaagaC 1613
||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1560 AAAGATAAAGAGCGTAAGAGGAAAAAGGAAATCCGCTATGAAGAAGAAGAGGAAGAAGAC 1619
Query 1614 GATGATGATTCAAGAAGAAGATGGCATAGGGCTGCATTAGATGAGAGAAGAAGACGACAA 1673
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1620 GATGATGATTCAAGAAGAAGATGGCATAGGGCTGCATTAGATGAGAGAAGAAGACGACGA 1679
Query 1674 CTAAGAGAAAAGGAGGATGACTTAGCTGATAGATTGAAAGAAGAGGAAGAGGTTGCTGAG 1733
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1680 CTAAGAGAAAAGGAGGATGACTTAGCTGATAGATTGAAAGAAGAAGAAGAGGTTGCTGAG 1739
Query 1734 GCGAAGAGGAGTGCCGAGGAGCAAAATTTGCAGCAACAGCAATTAGATGCCTTAAGAATC 1793
|||||||| | ||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1740 GCGAAGAGAAATGCCGAGGAGCAAAAGTTGCAGCAACAGCAATTAGATGCCTTAAGGATC 1799
Query 1794 CTATCGGGACAGGCAGCTATTGGAAGCGAAACGGTTCAGACATCACCTATTGAAAATGAT 1853
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1800 CTATCTGGACAGGCAGCTATTGGAAGTGAAACGGTTCAGACATCACCTATTGAAAATGAT 1859
Query 1854 CACAAGGCAACTCTCCAAACTGTCGGTGAATCTGCCAATGAGCACCATGCAGCAGATTTT 1913
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1860 CATAAGGCAACTCTCCAAACTGTCGGTGAATCTGCCAATGAGCACCATGCAGCAGATTTT 1919
Query 1914 GAAGAAAATGGTTCTGGTAATGAATCGATGGCTATCGATAATAATAGTGGATCAGAGGCA 1973
||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1920 GAACAAAATGGTTCTGGTAATGAATCCATGGCTATTGATAATAATAGTGGATCAGAGGCA 1979
Query 1974 CATGCTCCCTCAAAGAAATTAGGATTTGGGCTTGTGGGATCCGGAAAGCGAACTTCTGTG 2033
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1980 CATGCTCCCTCAAAGAAATTAGGGTTTGGGCTTGTGGGATCCGGAAAGCGAACATCTGTG 2039
Query 2034 CCTTCTGTTTTCTATGAGGAGGATGAAGATGAAGCACGTAAGGCTAAAAAGATGAAACCT 2093
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 2040 CCTTCTGTTTTCTATGAGGAGGATGAAGACGAAGCGCGTAAGGCTAAAAAGATGAAACCT 2099
Query 2094 TTGGTTCCTATAGATTACTCAACCGAGGAACAAGAGGCTGTGGCCCATGGTGGCTCAGGG 2153
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 2100 TTGGTTCCTATAGATTACTCAACCGAGGAACAGGAGGCCGTGGCCCATGGTGGCTCAGGG 2159
Query 2154 AATACACCACCTCATTTGGCTTTAGCCGCTGAATTTGCAAAACGAATTTCGAGTACCAAT 2213
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 2160 AATACACCACCTCATTTGGCTTTAGCCGCTGAATTTGCTAAACGAATTTCGAGTACTAAT 2219
Query 2214 CCCAAGGAAGAGACGATAGAAACCGAAAAACAAAGGAGCAGACGTTCTCATGATAAGGCA 2273
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2220 CCCAAGGAAGAGACAATAGAAACCGAAAAACAAAGGAGCAGACGTTCTCATGATAAGTCA 2279
Query 2274 AGCCACCgggacagggaaagggaaagggaaagggacagggacagggaTAGAGTCAGGGAC 2333
||||||||||||||||||||||||||||| ||||||||| | | ||||||||
Sbjct 2280 AGCCACCGGGACAGGGAAAGGGAAAGGGA------CAGGGACAG--A--G--TCAGGGAC 2327
Query 2334 CGAGGTGACGGGCATAGTGGTCCCACCAAAGACGCCAAAGAGTCTGGAAAAGCAAAGATA 2393
|||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 2328 CGAGGTGATGGGCATAGTGGTCCAACCAAAGACGCTAAAGAGTCTGGAAAAGCAAAGATA 2387
Query 2394 ATTGATACTAAGTTTCTGGATGCGAAACAATTGATAGATACAATCCCAAAGACAAAGGAA 2453
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2388 CCTGATACCAAGTTTCTGGATGCGAAACAATTGATAGATACAATCCCAAAGACAAAGGAA 2447
Query 2454 GATTTATTTTCTTACGAGATAAACTGGGCTATGTATGACAAGCACCAAGTGCACGAAAGA 2513
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2448 GACTTATTTTCGTACGAGATAAACTGGGCTATGTATGACAAGCACCAAGTGCACGAAAGA 2507
Query 2514 ATGAGACCATGGATCTCAAAGAAAATTATGGAGTTTCTCGGAGAAGAGGAAGCCACTCTG 2573
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2508 ATGAGACCATGGATCTCAAAGAAAATTATGGAGTTTCTCGGAGAAGAGGAAGCCACGCTG 2567
Query 2574 GTAGATTTCATCGTGTCAAACACTCAACAACACGTGCAGGCGTCTCAGATGCTTGAGCTG 2633
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 2568 GTAGATTTCATCGTGTCAAACACTCAACAACACGTGAAGGCGTCTCAGATGCTCGAGCTG 2627
Query 2634 TTGCAATCAATTCTAGACGAAGAAGCTGAGATGTTTGTGCTGAAGATGTGGAGAATGCTC 2693
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2628 TTGCAATCAATTCTAGACGAAGAGGCTGAGATGTTTGTGCTGAAGATGTGGAGAATGCTC 2687
Query 2694 ATCTTTGAGATCAAGCGGGTTGAAGCTGGAGTCCCGGTAAAATCCAAAGCCTGAAACTTT 2753
|||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 2688 ATCTTTGAAATCAAGCGAGTCGAAGCTGGAGTCCCGGTAAAATCCAAAGCCTGAAACTTT 2747
Query 2754 TCTTTAAAGATCTTTATCTTCCTTTGTTGCTTAGTATCCCAAtttttttCCAAGTCTTCT 2813
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2748 TCTTTAAAGATTTTTATCTTCCTTTGTTGCTTAGTATCCCAATTTTTTTC-AAGTCTTCT 2806
Query 2814 TGTCTTTGGATTAAAAAAGAATCGCCATGTTTAAATGCAAAAGAAGATATTGAAACAAGA 2873
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2807 TGTCTTTGGATTATAAAAGAATCGCCATGTTTAAATGCAAAAGAAGAGATTGAAACAAGA 2866
Query 2874 AAATACAAAATATACATT 2891
||||||||| ||||||||
Sbjct 2867 AAATACAAATTATACATT 2884
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109319003150
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5