BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G60220.1
Length=2016
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475298 jgi|Araly1|475298|fgenesh2_kg.2__428__AT1G60220.1 2211 0.0
> Ahg475298 jgi|Araly1|475298|fgenesh2_kg.2__428__AT1G60220.1
Length=2023
Score = 2211 bits (1197), Expect = 0.0
Identities = 1422/1529 (93%), Gaps = 22/1529 (1%)
Strand=Plus/Plus
Query 402 GCAAGGAAATG-CAGTTTCAAAAGATACCTCT-AG--AGGGAATGCAGACTCAAAAGACA 457
|||||| || | ||| |||||||| |||||| || ||||||||||| ||| |||||||
Sbjct 438 GCAAGGGAA-GACAGACTCAAAAGACACCTCTAAGCAAGGGAATGCAGCCTCGAAAGACA 496
Query 458 CCTCTAGACAAGGGAATGCAGATTCAAAAGAAGTCTCACGGTCAACATTTTCTGCGGTTT 517
||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||
Sbjct 497 CCTCTAGACAAGGGAATACAGACTCAAAAGAAGTCTCACGGTCAACATTTTCTGCCTTTT 556
Query 518 TCAGTAAACCAAAAACGGATTCTCAGTCAAAGAAAGCCTTTGGTAAAGAACTAGAAGATC 577
|||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||
Sbjct 557 TCAGTAAACCAAAAACAGATACTCAGTCAAAGAAAGCATTTGGTAAAGAACTAGAAGATT 616
Query 578 TGGGATGTGAAAGGAGGAAACACAAGGCTGGTAGAAAGCCTGTAACAAGGCTGAGCAACG 637
||||||||||||| | |||||||||||||| ||||||||| |||||||||||||||| ||
Sbjct 617 TGGGATGTGAAAGTAAGAAACACAAGGCTGATAGAAAGCCCGTAACAAGGCTGAGCAGCG 676
Query 638 GGTGGCGGTTGTTGCCAGATGTAGGGAAAGCTGAGCACAGTGCAAAGCAGTTTGATTCTG 697
|||||||||||||| ||||| ||||||| ||||||||||||| |||||||||||||||||
Sbjct 677 GGTGGCGGTTGTTGTCAGATATAGGGAACGCTGAGCACAGTGAAAAGCAGTTTGATTCTG 736
Query 698 GACTTAAAGAATCAAAAGGGAATAAGAAATCCAAGGAACCTTATGGAAAGAAAAGGCCCA 757
|| |||||| ||||| |||||| |||||||||||||| ||||||||||||||| || ||
Sbjct 737 GATTTAAAGGGTCAAATGGGAATCAGAAATCCAAGGAATCTTATGGAAAGAAAAAGCGCA 796
Query 758 TGGAATCTTCGACTTATTCTCtgattgatgatgatgatgatgatgatgatgatgatgaCA 817
|||| ||||| | ||| ||| | || | |||||||||||||||||||||||
Sbjct 797 AGGAAACTTCG----A---TCT-ATT-CT-CTGCT--TGATGATGATGATGATGATGACA 844
Query 818 ACGACACCAGTGGCCATGAAACTCCTAGGGAGTGGTCTTGGGAAAAATCTCCATCACAAA 877
||||| ||| ||| ||||||||||||||||||||||| ||| || ||||||||||| |||
Sbjct 845 ACGACCCCATTGGTCATGAAACTCCTAGGGAGTGGTCGTGGCAAGAATCTCCATCAGAAA 904
Query 878 GTTCAAGGCGCCGTAAGAAATCAGAGGACACAGTGATAAATGTGGATGAAGAAGAAGCTC 937
|||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 905 GTTCAAAGCGCCGTAAGAAATCAGAGGATACAGTGATAAATGTGGATGAAGAAGAACCTC 964
Query 938 AGCCTTCAACAGTGGCGGAGCAAGCGGCTGAACTGCCTGAAGGCTTACAGGAAGATATAT 997
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 965 AGCCTTCAACAGTGGCGGAGCAAGCGGTTGAACTGCCTGAAGGCTTACAGGAAGATATAT 1024
Query 998 GCTACCCAACAAGGGATGATCCTCACTTTGTTCAAGTTTGTCTTAAAGATCTTGAATGCC 1057
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1025 GCTACCCATCAAGGGATGATCCTCACTTTGTTCAAGTTTGTCTTAAAGATCTTGAATGCC 1084
Query 1058 TTGCACCTCGAGAATATCTGACATCGCCGGTTATGAATTTCTACATGAGGTTCTTGCAGC 1117
|||| |||||||||| ||| ||||| |||||||||||||||||||| |||||||||||||
Sbjct 1085 TTGCGCCTCGAGAATTTCTAACATCACCGGTTATGAATTTCTACATCAGGTTCTTGCAGC 1144
Query 1118 AGCAGATATCATCATCGAATCAAATCTCTGCTGATTGTCACTTCTTTAATACCTATTTCT 1177
|||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct 1145 AGCAGATATCATCATCGAATCAAATCTCTGCTGATTGTCATTTCTTCAATACATATTTCT 1204
Query 1178 ACAAGAAGCTCAGTGACGCTGTTACGTACAAGGGGAATGACAAGGATGCCTTCTTTGTGA 1237
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1205 ACAAGAAGCTCAGTGACGCTGTTACGTACAAGGGGAATGACAAGGATGCCTTTTTTGTGA 1264
Query 1238 GGTTCAGGCGGTGGTGGAAGGGTATTGATCTATTTCGTAAGGCTTATATTTTCATACCAA 1297
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1265 AGTTCAGGCGGTGGTGGAAGGGTATTGATCTATTTCGTAAAGCTTATATTTTCATACCAA 1324
Query 1298 TACATGAAGATCTCCACTGGAGCCTTGTGATAGTTTGCATCCCTGATAAGAAAGATGAAT 1357
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1325 TACATGAAGATCTTCATTGGAGCCTTGTGATAGTTTGCATCCCTGATAAGAAAGATGAAT 1384
Query 1358 CGGGGTTGACTATACTTCACCTTGATTCTCTAGGACTTCACTCGAGAAAATCAATTGTTG 1417
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1385 CGGGGTTGACTATACTTCACCTTGATTCTTTAGGACTTCACTCGAGAAAATCAATTGTTG 1444
Query 1418 AAAATGTAAAAAGGTTTCTAAAAGACGAATGGAATTATTTGAATCAAGATGACTATTCCT 1477
|||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1445 AAAACGTAAAAAGGTTTCTGAAAGACGAATGGAATTATTTGAATCAAGATGATTATTCCT 1504
Query 1478 TGGATCTGCCTATCTCAGAAAAAGTATGGAAAAACCTCCCTCGTAGGATCAGCGAAGCTG 1537
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1505 TGGATCTACCTATCTCAGAAAAAGTATGGAAAAACCTCCCTCGTAGGATCAGCGAAGCTG 1564
Query 1538 TTGTTCAGGTTCCGCAGCAGAAAAACGATTTTGATTGTGGTCCGTTTGTGCTCTTCTTCA 1597
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1565 ATATACAGGTTCCGCAGCAGAAAAACGATTTTGATTGTGGTCCGTTTGTGCTCTTCTTCA 1624
Query 1598 TTAAACGGTTCATTGAAGAGGCGCCTCAAAGGCTGAAAAGGAAAGACCTGGGAATGTTCG 1657
|| |||||||||| |||||||| ||||||||| ||||||||||||| ||| |||||||||
Sbjct 1625 TTCAACGGTTCATCGAAGAGGCACCTCAAAGGTTGAAAAGGAAAGATCTGAGAATGTTCG 1684
Query 1658 ACAAGAAGTGGTTTAGACCCGATGAAGCCTCTGCTCTGAGAATCAAAATCCGAAACACGC 1717
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1685 ACAAGAAGTGGTTTAGACCCGATGAAGCTTCTGCTCTGAGAATCAAAATCCGAAACACAC 1744
Query 1718 TCATCGAGCTATTCCGTGTCAGTGACCAGACAGAGTAAACCAGTACAGATTATGCAGCTT 1777
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |
Sbjct 1745 TCATCGAGCTATTCCGTGTCAGTGACCAGACAGACTAAACCAGTACAGATTATGCATCAT 1804
Query 1778 C-AAATCAAGACATTTCTCACCGCTCTAACAGAGTTCAAGTTTTTGTTCTTGTATAGACT 1836
| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1805 CCAAATCAAGACATTGCTCACCGCTCTAACAGAGTTCAAGTTTTTGTTCTTGTATAGACT 1864
Query 1837 T----GGCAGAAGTATTATTTGGGCCAAAAGTTAAATTAAAAAATGGCTACAGACTCCAT 1892
| |||||||||| ||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 1865 TTAAAGGCAGAAGTAATATTTGGGCCAAAAGTTAAATTAAAAAATGGGTACATACTCCAT 1924
Query 1893 AGGTTAATGTTGTAATCCaaaaaaaaaaa 1921
||||| |||||||||||||||||||||||
Sbjct 1925 AGGTTGATGTTGTAATCCAAAAAAAAAAA 1953
Score = 553 bits (299), Expect = 2e-156
Identities = 437/501 (87%), Gaps = 20/501 (4%)
Strand=Plus/Plus
Query 1 ATGACGAAGAGGAAGAAGGAAGTAATAGATGTCGATTGCTCCGAGAAGAAAGATTTTGTG 60
||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGACGAAGAGGAAGAAGGAAGTTGTAGATGTCGATTGTTCCGAGAAGAAAGATTTTGTG 60
Query 61 ATTGATTGGTCTTCCGCTATGGATAAGGAAGACGAAGTTCCCGAGCTCGAGATTGTTAAT 120
|||||||||||||| || |||||||||||||| |||||||||||||| ||||||||||||
Sbjct 61 ATTGATTGGTCTTCAGCCATGGATAAGGAAGAAGAAGTTCCCGAGCTGGAGATTGTTAAT 120
Query 121 ACCACCAAACCTACTCCTCCGCCACCGCCAACGTTTTTCTCCGACGATCAAACCGATTCT 180
|||||||||||| | || |||| | ||||||||||| ||||||||||||| || ||||||
Sbjct 121 ACCACCAAACCTCCGCCGCCGCAAACGCCAACGTTTCTCTCCGACGATCAGACGGATTCT 180
Query 181 CCGAAA-CTCCTAACCGATCGTGACCTCGACGAGCAGCTAGAGCGTAA-AAAAGCGA-TC 237
| || | ||| |||||||||||| ||| ||||||||||| ||||||| |||| ||| ||
Sbjct 181 CAGATATCTC-TAACCGATCGTGCCCTTGACGAGCAGCTGGAGCGTAGCAAAA-CGAATC 238
Query 238 CTG--ACATTAGGTCCGGGCTTACCCGACAAGGGTGAGAAAATTCGACTCAAAATCG-CT 294
|| |||||||||||||| ||||||||||||||||||| ||| ||||||| ||||| ||
Sbjct 239 TTGTGACATTAGGTCCGGGTTTACCCGACAAGGGTGAGAGAATCCGACTCAGAATCGTCT 298
Query 295 GATCTCGAAGAGGAGAAGCAGCGTAGAGTTTTAGAAGGCTCGAAAATGGAGGTGGACAGA 354
| || ||||| |||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 299 -ACCTTGAAGAAGAGAAGCAGCGTAGGGTTTTAGACCGCTCGAAAATGGAGGTGGACAGA 357
Query 355 AGTTCTAAGGTCGTGTCTTCGACTAGCTCAGGTTCAGATGTTTTACCGCAAGG-AAATGC 413
||||| |||||| |||||||||| ||||||||||||||||| ||| | ||||| ||| ||
Sbjct 358 AGTTCGAAGGTCATGTCTTCGACGAGCTCAGGTTCAGATGTCTTAACACAAGGGAAA-GC 416
Query 414 AGTTTCAAAAGATACCT-CTAG--A-GGGAATG-CAGACTCAAAAGACACCTCTA-GACA 467
|| |||||||| ||| |||| | ||||| | ||||||||||||||||||||| | ||
Sbjct 417 AGCCTCAAAAGAC-CCTTCTAGGCAAGGGAA-GACAGACTCAAAAGACACCTCTAAG-CA 473
Query 468 AGGGAATGCAGATTCAAAAGA 488
||||||||||| || |||||
Sbjct 474 AGGGAATGCAGCCTCGAAAGA 494
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75799587550
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5