BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G60220.1 Length=2016 Score E Sequences producing significant alignments: (Bits) Value Ahg475298 jgi|Araly1|475298|fgenesh2_kg.2__428__AT1G60220.1 2211 0.0 > Ahg475298 jgi|Araly1|475298|fgenesh2_kg.2__428__AT1G60220.1 Length=2023 Score = 2211 bits (1197), Expect = 0.0 Identities = 1422/1529 (93%), Gaps = 22/1529 (1%) Strand=Plus/Plus Query 402 GCAAGGAAATG-CAGTTTCAAAAGATACCTCT-AG--AGGGAATGCAGACTCAAAAGACA 457 |||||| || | ||| |||||||| |||||| || ||||||||||| ||| ||||||| Sbjct 438 GCAAGGGAA-GACAGACTCAAAAGACACCTCTAAGCAAGGGAATGCAGCCTCGAAAGACA 496 Query 458 CCTCTAGACAAGGGAATGCAGATTCAAAAGAAGTCTCACGGTCAACATTTTCTGCGGTTT 517 ||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||| Sbjct 497 CCTCTAGACAAGGGAATACAGACTCAAAAGAAGTCTCACGGTCAACATTTTCTGCCTTTT 556 Query 518 TCAGTAAACCAAAAACGGATTCTCAGTCAAAGAAAGCCTTTGGTAAAGAACTAGAAGATC 577 |||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||| Sbjct 557 TCAGTAAACCAAAAACAGATACTCAGTCAAAGAAAGCATTTGGTAAAGAACTAGAAGATT 616 Query 578 TGGGATGTGAAAGGAGGAAACACAAGGCTGGTAGAAAGCCTGTAACAAGGCTGAGCAACG 637 ||||||||||||| | |||||||||||||| ||||||||| |||||||||||||||| || Sbjct 617 TGGGATGTGAAAGTAAGAAACACAAGGCTGATAGAAAGCCCGTAACAAGGCTGAGCAGCG 676 Query 638 GGTGGCGGTTGTTGCCAGATGTAGGGAAAGCTGAGCACAGTGCAAAGCAGTTTGATTCTG 697 |||||||||||||| ||||| ||||||| ||||||||||||| ||||||||||||||||| Sbjct 677 GGTGGCGGTTGTTGTCAGATATAGGGAACGCTGAGCACAGTGAAAAGCAGTTTGATTCTG 736 Query 698 GACTTAAAGAATCAAAAGGGAATAAGAAATCCAAGGAACCTTATGGAAAGAAAAGGCCCA 757 || |||||| ||||| |||||| |||||||||||||| ||||||||||||||| || || Sbjct 737 GATTTAAAGGGTCAAATGGGAATCAGAAATCCAAGGAATCTTATGGAAAGAAAAAGCGCA 796 Query 758 TGGAATCTTCGACTTATTCTCtgattgatgatgatgatgatgatgatgatgatgatgaCA 817 |||| ||||| | ||| ||| | || | ||||||||||||||||||||||| Sbjct 797 AGGAAACTTCG----A---TCT-ATT-CT-CTGCT--TGATGATGATGATGATGATGACA 844 Query 818 ACGACACCAGTGGCCATGAAACTCCTAGGGAGTGGTCTTGGGAAAAATCTCCATCACAAA 877 ||||| ||| ||| ||||||||||||||||||||||| ||| || ||||||||||| ||| Sbjct 845 ACGACCCCATTGGTCATGAAACTCCTAGGGAGTGGTCGTGGCAAGAATCTCCATCAGAAA 904 Query 878 GTTCAAGGCGCCGTAAGAAATCAGAGGACACAGTGATAAATGTGGATGAAGAAGAAGCTC 937 |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||| Sbjct 905 GTTCAAAGCGCCGTAAGAAATCAGAGGATACAGTGATAAATGTGGATGAAGAAGAACCTC 964 Query 938 AGCCTTCAACAGTGGCGGAGCAAGCGGCTGAACTGCCTGAAGGCTTACAGGAAGATATAT 997 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 965 AGCCTTCAACAGTGGCGGAGCAAGCGGTTGAACTGCCTGAAGGCTTACAGGAAGATATAT 1024 Query 998 GCTACCCAACAAGGGATGATCCTCACTTTGTTCAAGTTTGTCTTAAAGATCTTGAATGCC 1057 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1025 GCTACCCATCAAGGGATGATCCTCACTTTGTTCAAGTTTGTCTTAAAGATCTTGAATGCC 1084 Query 1058 TTGCACCTCGAGAATATCTGACATCGCCGGTTATGAATTTCTACATGAGGTTCTTGCAGC 1117 |||| |||||||||| ||| ||||| |||||||||||||||||||| ||||||||||||| Sbjct 1085 TTGCGCCTCGAGAATTTCTAACATCACCGGTTATGAATTTCTACATCAGGTTCTTGCAGC 1144 Query 1118 AGCAGATATCATCATCGAATCAAATCTCTGCTGATTGTCACTTCTTTAATACCTATTTCT 1177 |||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||| Sbjct 1145 AGCAGATATCATCATCGAATCAAATCTCTGCTGATTGTCATTTCTTCAATACATATTTCT 1204 Query 1178 ACAAGAAGCTCAGTGACGCTGTTACGTACAAGGGGAATGACAAGGATGCCTTCTTTGTGA 1237 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1205 ACAAGAAGCTCAGTGACGCTGTTACGTACAAGGGGAATGACAAGGATGCCTTTTTTGTGA 1264 Query 1238 GGTTCAGGCGGTGGTGGAAGGGTATTGATCTATTTCGTAAGGCTTATATTTTCATACCAA 1297 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1265 AGTTCAGGCGGTGGTGGAAGGGTATTGATCTATTTCGTAAAGCTTATATTTTCATACCAA 1324 Query 1298 TACATGAAGATCTCCACTGGAGCCTTGTGATAGTTTGCATCCCTGATAAGAAAGATGAAT 1357 ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1325 TACATGAAGATCTTCATTGGAGCCTTGTGATAGTTTGCATCCCTGATAAGAAAGATGAAT 1384 Query 1358 CGGGGTTGACTATACTTCACCTTGATTCTCTAGGACTTCACTCGAGAAAATCAATTGTTG 1417 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1385 CGGGGTTGACTATACTTCACCTTGATTCTTTAGGACTTCACTCGAGAAAATCAATTGTTG 1444 Query 1418 AAAATGTAAAAAGGTTTCTAAAAGACGAATGGAATTATTTGAATCAAGATGACTATTCCT 1477 |||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct 1445 AAAACGTAAAAAGGTTTCTGAAAGACGAATGGAATTATTTGAATCAAGATGATTATTCCT 1504 Query 1478 TGGATCTGCCTATCTCAGAAAAAGTATGGAAAAACCTCCCTCGTAGGATCAGCGAAGCTG 1537 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1505 TGGATCTACCTATCTCAGAAAAAGTATGGAAAAACCTCCCTCGTAGGATCAGCGAAGCTG 1564 Query 1538 TTGTTCAGGTTCCGCAGCAGAAAAACGATTTTGATTGTGGTCCGTTTGTGCTCTTCTTCA 1597 | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1565 ATATACAGGTTCCGCAGCAGAAAAACGATTTTGATTGTGGTCCGTTTGTGCTCTTCTTCA 1624 Query 1598 TTAAACGGTTCATTGAAGAGGCGCCTCAAAGGCTGAAAAGGAAAGACCTGGGAATGTTCG 1657 || |||||||||| |||||||| ||||||||| ||||||||||||| ||| ||||||||| Sbjct 1625 TTCAACGGTTCATCGAAGAGGCACCTCAAAGGTTGAAAAGGAAAGATCTGAGAATGTTCG 1684 Query 1658 ACAAGAAGTGGTTTAGACCCGATGAAGCCTCTGCTCTGAGAATCAAAATCCGAAACACGC 1717 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | Sbjct 1685 ACAAGAAGTGGTTTAGACCCGATGAAGCTTCTGCTCTGAGAATCAAAATCCGAAACACAC 1744 Query 1718 TCATCGAGCTATTCCGTGTCAGTGACCAGACAGAGTAAACCAGTACAGATTATGCAGCTT 1777 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | | Sbjct 1745 TCATCGAGCTATTCCGTGTCAGTGACCAGACAGACTAAACCAGTACAGATTATGCATCAT 1804 Query 1778 C-AAATCAAGACATTTCTCACCGCTCTAACAGAGTTCAAGTTTTTGTTCTTGTATAGACT 1836 | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1805 CCAAATCAAGACATTGCTCACCGCTCTAACAGAGTTCAAGTTTTTGTTCTTGTATAGACT 1864 Query 1837 T----GGCAGAAGTATTATTTGGGCCAAAAGTTAAATTAAAAAATGGCTACAGACTCCAT 1892 | |||||||||| ||||||||||||||||||||||||||||||| |||| ||||||| Sbjct 1865 TTAAAGGCAGAAGTAATATTTGGGCCAAAAGTTAAATTAAAAAATGGGTACATACTCCAT 1924 Query 1893 AGGTTAATGTTGTAATCCaaaaaaaaaaa 1921 ||||| ||||||||||||||||||||||| Sbjct 1925 AGGTTGATGTTGTAATCCAAAAAAAAAAA 1953 Score = 553 bits (299), Expect = 2e-156 Identities = 437/501 (87%), Gaps = 20/501 (4%) Strand=Plus/Plus Query 1 ATGACGAAGAGGAAGAAGGAAGTAATAGATGTCGATTGCTCCGAGAAGAAAGATTTTGTG 60 ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| Sbjct 1 ATGACGAAGAGGAAGAAGGAAGTTGTAGATGTCGATTGTTCCGAGAAGAAAGATTTTGTG 60 Query 61 ATTGATTGGTCTTCCGCTATGGATAAGGAAGACGAAGTTCCCGAGCTCGAGATTGTTAAT 120 |||||||||||||| || |||||||||||||| |||||||||||||| |||||||||||| Sbjct 61 ATTGATTGGTCTTCAGCCATGGATAAGGAAGAAGAAGTTCCCGAGCTGGAGATTGTTAAT 120 Query 121 ACCACCAAACCTACTCCTCCGCCACCGCCAACGTTTTTCTCCGACGATCAAACCGATTCT 180 |||||||||||| | || |||| | ||||||||||| ||||||||||||| || |||||| Sbjct 121 ACCACCAAACCTCCGCCGCCGCAAACGCCAACGTTTCTCTCCGACGATCAGACGGATTCT 180 Query 181 CCGAAA-CTCCTAACCGATCGTGACCTCGACGAGCAGCTAGAGCGTAA-AAAAGCGA-TC 237 | || | ||| |||||||||||| ||| ||||||||||| ||||||| |||| ||| || Sbjct 181 CAGATATCTC-TAACCGATCGTGCCCTTGACGAGCAGCTGGAGCGTAGCAAAA-CGAATC 238 Query 238 CTG--ACATTAGGTCCGGGCTTACCCGACAAGGGTGAGAAAATTCGACTCAAAATCG-CT 294 || |||||||||||||| ||||||||||||||||||| ||| ||||||| ||||| || Sbjct 239 TTGTGACATTAGGTCCGGGTTTACCCGACAAGGGTGAGAGAATCCGACTCAGAATCGTCT 298 Query 295 GATCTCGAAGAGGAGAAGCAGCGTAGAGTTTTAGAAGGCTCGAAAATGGAGGTGGACAGA 354 | || ||||| |||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 299 -ACCTTGAAGAAGAGAAGCAGCGTAGGGTTTTAGACCGCTCGAAAATGGAGGTGGACAGA 357 Query 355 AGTTCTAAGGTCGTGTCTTCGACTAGCTCAGGTTCAGATGTTTTACCGCAAGG-AAATGC 413 ||||| |||||| |||||||||| ||||||||||||||||| ||| | ||||| ||| || Sbjct 358 AGTTCGAAGGTCATGTCTTCGACGAGCTCAGGTTCAGATGTCTTAACACAAGGGAAA-GC 416 Query 414 AGTTTCAAAAGATACCT-CTAG--A-GGGAATG-CAGACTCAAAAGACACCTCTA-GACA 467 || |||||||| ||| |||| | ||||| | ||||||||||||||||||||| | || Sbjct 417 AGCCTCAAAAGAC-CCTTCTAGGCAAGGGAA-GACAGACTCAAAAGACACCTCTAAG-CA 473 Query 468 AGGGAATGCAGATTCAAAAGA 488 ||||||||||| || ||||| Sbjct 474 AGGGAATGCAGCCTCGAAAGA 494 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 75799587550 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5