BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G60230.1
Length=1594
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925035 jgi|Araly1|925035|scaffold_200596.1 2353 0.0
> Ahg925035 jgi|Araly1|925035|scaffold_200596.1
Length=1417
Score = 2353 bits (1274), Expect = 0.0
Identities = 1368/1414 (97%), Gaps = 3/1414 (0%)
Strand=Plus/Plus
Query 62 ATTTTGTGATTGGTCGTATGTCGACGACAATGAGGCGTCTTGGAATCATCACTCTCACCA 121
||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 7 ATTTTGTGA-T--TCGTATATCGACGACAATGAGGCGTCTTGGAATCATCACTCTCACCA 63
Query 122 ATTCCGCCGCCGTCGTCACTCCGTCGCTACTCTCTTCAACGGCAGCTTTCCCCGGAACCC 181
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 64 ATTCCGCCGCCGTCGTCACTCCGACACTACTCTCTTCAACGGCAGCTTTCCCCGGAACCC 123
Query 182 TAACTTTACCCTCTCCCCTCCTCAGCGACCGTCTTACCAATTCAATTCTCTTTCACGAAT 241
||||| |||||||||| |||| || | |||||||||||||||| |||| ||| ||| |||
Sbjct 124 TAACTCTACCCTCTCCTCTCCACAACCACCGTCTTACCAATTCCATTCGCTTCCACAAAT 183
Query 242 CCAGAAGCctctccttctcttgcttctcttcttcttcttcttcttcAGCAGCTTATCTTC 301
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 184 CCAAAAGCCTCTCTTTCTCTTGCTTCTCTTCTTCTTCTTCTTCTTCAGCAGCTTATCTTC 243
Query 302 CTTCACTAGAAGAGTACCCATCAGCTAAAGGTTCTGTGAAGAGAGATGATAACCAGAAGG 361
||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||
Sbjct 244 CTTCACTAGAAGAGTACCCATCAACTAAAGGTTCTGTGGCGAGAGATGATAAGCAGAAGG 303
Query 362 TGGTCTTGAAGGGTATGACTTATGCTTCGCTCCAAGAATGGGTTCAATCTCATGGGTTTA 421
|||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||
Sbjct 304 TGGTCTTGAAGGGTATGACTTATGCTGCTCTCCAAGAATGGGTTCAGTCTCATGGGTTTA 363
Query 422 GACCAGGACAGGCTTTAATGTTGTGGAAGAGATTGTACAAGGACAATATATGGGCAAATA 481
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 364 GACCAGGACAGGCTTTGATGTTGTGGAAGAGATTATACAAGGACAATATATGGGCAAGTA 423
Query 482 ATGTTGATGAACTTGAAGGTTTGAACAAAGATCTCAAGAGAATGATTAGTGAACATGCTG 541
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 424 ATGTTGATGAACTTGAAGGTTTGAATAAAGATCTCAAGAGAATGATTAGTGAACATGCTG 483
Query 542 AGTTTGGGGCATTATCTTTTAAGGATATTCGTTCGGCTTCAGATGGAACTAGGAAGATTC 601
|||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 484 AGTTTGGGGCGTTATCGTTTAAGGATATTCGTTCCGCTTCAGATGGAACTAGGAAGATTC 543
Query 602 TGTTCACGTTGGATGATGGACTTGTGATTGAGACTGTTGTTATACCTTGTGATCGAGGCA 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 TGTTCACGTTGGATGATGGACTTGTGATTGAGACTGTTGTTATACCTTGTGATCGAGGCA 603
Query 662 GGACAACAGTTTGTGTTTCGAGCCAAGTTGGTTGTGCCATGAATTGTCAGTTCTGCTACA 721
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 604 GGACTACAGTTTGTGTTTCGAGCCAAGTGGGTTGTGCCATGAATTGTCAGTTCTGCTACA 663
Query 722 CTGGCAGGATGGGCTTGAAGAGAAATCTCACTACTGCTGAGATAGTTGAGCAGGCTGTTT 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 CTGGCAGGATGGGCTTGAAGAGAAATCTCACTACTGCTGAGATAGTTGAGCAGGCTGTTT 723
Query 782 ATGCCAGGCGATTGCTTTCCCATGAAGTTGGGTCAATTACAAATGTCGTCTTTATGGGAA 841
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 724 ATGCCAGGCGATTGCTTTCCCATGAAGTTGGGTCAATAACAAATGTCGTATTTATGGGAA 783
Query 842 TGGGAGAGCCATTTCACAACATTGACAATGTCATCAAAGCTGCAAACATAATGGTAGACG 901
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 784 TGGGGGAGCCATTTCACAACATTGATAATGTCATCAAAGCTGCAAACATAATGGTAGACG 843
Query 902 AGAATGGACTTCACTTCAGTCCCCGCAAGGTCACAGTCTCGACTAGTGGCCTTGTTCCTC 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 844 AGAATGGACTTCACTTCAGTCCCCGCAAGGTCACAGTCTCGACTAGTGGCCTTGTTCCTC 903
Query 962 AGCTGAAGCGTTTTCTCCGTGAGTCAAATTGCGCTTTGGCAGTCAGTCTGAATGCAACAA 1021
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 904 AGCTGAAGCGTTTTCTCCGTGAGTCAAATTGCGCTTTGGCAGTCAGTCTGAATGCAACAA 963
Query 1022 CTGATGAGGTCAGAAACTGGATTATGCCTATAAACAGGAAATACAAGTTATCTTTGCTCC 1081
| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 964 CCGATGAGGTCAGAAACTGGATCATGCCCATAAACAGGAAATACAAGTTATCTTTGCTCC 1023
Query 1082 TTGAGACGCTCAGAGAAGGACTCAGTTCAAGGCATAAGTACAAAGTGTTGTTTGAATATG 1141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1024 TTGAGACGCTCAGAGAAGGACTCAGTTCAAGGCATAAGTACAAAGTGTTGTTTGAATATG 1083
Query 1142 TAATGCTCGCAGGAGTCAATGACAGCATGGATGATGCAAGGAGGCTAGTGGAGCTTGTGC 1201
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1084 TAATGCTCGCAGGAGTCAATGACAACATGGATGATGCAAGGAGGCTAGTGGAGCTTGTGC 1143
Query 1202 AGGGGATTCCATGCAAGATCAACCTTATTCAATTCAACCCACACAGTGGTTCTCAGTTCA 1261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1144 AGGGGATTCCATGCAAGATCAACCTTATTCAATTCAACCCACACAGTGGTTCTCAGTTCA 1203
Query 1262 TACAGACCGAGGAAGACAAGATGATCAAGTTTCGTAACGTTTTGGCTGAAGGAGGCTGCA 1321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1204 TACAGACCGAGGAAGACAAGATGATCAAGTTTCGTAACGTTTTGGCTGAAGGAGGCTGCA 1263
Query 1322 CTGTTCTCATGCGGTTTAGCCGAGGCAATGATCAAATGGCAGCATGTGGGCAGCTTGGTA 1381
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1264 CAGTTCTCATGCGGTTTAGCCGAGGCAACGATCAAATGGCAGCATGTGGGCAGCTTGGTA 1323
Query 1382 TGATTGGGGCGGTTCAGGCACCAGTGATGCGGGTGCCCGAGCAGTTCCGCACCGCTTTAA 1441
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1324 TGATTGGGGCGGTTCAGGCACCAGTGATGCGGGTGCCCGAGCAGTTCCGCGCCGCTTTAA 1383
Query 1442 AAGCATCAGTTTGATCTGTCAAATGTTGGATTAG 1475
|||||||||||||||||||||||||| ||||||
Sbjct 1384 AAGCATCAGTTTGATCTGTCAAATGTCAGATTAG 1417
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59725504160
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5