BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G60240.1

Length=834
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg475296 jgi|Araly1|475296|fgenesh2_kg.2__426__AT1G60240.1          737    0.0  


> Ahg475296 jgi|Araly1|475296|fgenesh2_kg.2__426__AT1G60240.1
Length=682

 Score =  737 bits (399),  Expect = 0.0
 Identities = 492/536 (92%), Gaps = 9/536 (2%)
 Strand=Plus/Plus

Query  84   GATGATGAAGTCAAGACGTGAACAATCAATCGAAGAAGCAATCGTCGCAAATTATTTGAA  143
            ||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||
Sbjct  1    GATGATGAAGTCAAGACGTGACCAATCAATTGAAGATGCAATCGTCGCAAATTATTTGAA  60

Query  144  GATGATGATCGATAACGTAAACGTTTGGCCTCGCCACTTCCTCCGAAG-CGAAGACGTGT  202
            |||||||||||||||||||| |||||||||||| |||||||||||||| | |||||||||
Sbjct  61   GATGATGATCGATAACGTAATCGTTTGGCCTCGTCACTTCCTCCGAAGTC-AAGACGTGT  119

Query  203  ACTGCAAGAATCCGTGGACGCTTTTCGTTACTAGAGATCCTATAATCCTACACTTCGGAC  262
            ||||||||||||| |||||||||||||||||| ||||||||||  |||||||   |||| 
Sbjct  120  ACTGCAAGAATCCATGGACGCTTTTCGTTACTCGAGATCCTATGGTCCTACAAGCCGGAG  179

Query  263  GATACTTCTTCGTTAATCGGAGTGTGAATTCAGGTTTAACCGATGGATGTGAATACGGTT  322
            |||||||||||||||| ||||||||||||||||||  |||||||||||||||||||||||
Sbjct  180  GATACTTCTTCGTTAACCGGAGTGTGAATTCAGGTAAAACCGATGGATGTGAATACGGTT  239

Query  323  GTTGGAGAATCATCGGTCGTGATAGAGTGATCAAGTCGGTGACGACCGGGAAGATTCTAG  382
            ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  240  GTTGGAGAATCATTGGTCGTGATAAAGTGATCAAGTCGGTGACGACCGGGAAGATTCTAG  299

Query  383  GGTTAAAGAAGGTTTATAAGTTCTGTGAAACTGATCGGAAACCGAAATCGGTTT-TTAAG  441
            |||||||||||||||||||||||||| |||||||  |||| |||| |||| ||| |||||
Sbjct  300  GGTTAAAGAAGGTTTATAAGTTCTGTAAAACTGA--GGAA-CCGAGATCG-TTTATTAAG  355

Query  442  TTCTTGGAAAAGGAGAAGAGAAGAGTAAGAGATAGACGAATCTGGGCGATGGAAGAGTAT  501
            ||| |||||| |||||||||||||| |||||||| | |||||||||||||||| ||||||
Sbjct  356  TTCGTGGAAATGGAGAAGAGAAGAGCAAGAGATAAAAGAATCTGGGCGATGGAGGAGTAT  415

Query  502  AGGTTTGCAAGTACGTGGAAACAAGATTACGTGATCTGCAAGATTCGACGTCT-GTATCC  560
            |||||||||||| |||||||||||||||||||||||||||||||| ||| ||| | ||||
Sbjct  416  AGGTTTGCAAGTGCGTGGAAACAAGATTACGTGATCTGCAAGATTAGACTTCTTG-ATCC  474

Query  561  ACAACCATTTGACTACATGTTGGCCCAGCACATTCGAGGTTACTATAAATGAATCA  616
            ||| |||||||| ||||||||| | || || |||||||||||||||||||||||||
Sbjct  475  ACAGCCATTTGAGTACATGTTGTCTCACCATATTCGAGGTTACTATAAATGAATCA  530


 Score = 63.9 bits (34),  Expect = 2e-09
 Identities = 34/34 (100%), Gaps = 0/34 (0%)
 Strand=Plus/Plus

Query  796  CTAGAATTGAAAAGAAAGATTGGTGGAATCGTTT  829
            ||||||||||||||||||||||||||||||||||
Sbjct  649  CTAGAATTGAAAAGAAAGATTGGTGGAATCGTTT  682



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30841439853


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5