BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G60250.1
Length=756
Score E
Sequences producing significant alignments: (Bits) Value
Ahg338347 jgi|Araly1|338347|fgenesh1_pg.C_scaffold_2000446 778 0.0
> Ahg338347 jgi|Araly1|338347|fgenesh1_pg.C_scaffold_2000446
Length=825
Score = 778 bits (421), Expect = 0.0
Identities = 671/785 (85%), Gaps = 44/785 (6%)
Strand=Plus/Plus
Query 1 ATGGCTCAAGTTTGTCACACATGTAGACATGTAACAGCCGTGATCCATTGTGTTACAGAA 60
||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1 ATGGCTCAAGTGTGTCACACATGTAGACATGTAAAAGCCGTGATCCGTTGTGTTACAGAA 60
Query 61 GCTCTTAACTTCTGCCTTACATGTGACAACCTT-CGCCATCATAATAACATACATGCAGA 119
||||||||| |||||||||||||||| || || | |||| ||||||| |||||||||
Sbjct 61 ACTCTTAACTACTGCCTTACATGTGACTAC-TTGCACCATTGTAATAACTTACATGCAGG 119
Query 120 ACACGTACGTTACCAACTTTGCGATAACTGCTCGATGTATCCGTCTATACTTTTCTGTTA 179
||||||||||||||||||||||||||||||| |||| |||| ||||||||| |||||||
Sbjct 120 ACACGTACGTTACCAACTTTGCGATAACTGCACGATAAATCCATCTATACTTCTCTGTTA 179
Query 180 TGAGGACGGGATGGTTCTTTGTCAATCATGTTATTCG-CACCATTACAATTGTGCCACTA 238
|| ||||||| || |||||||||||| |||||||| ||| |||||||||||||| |||
Sbjct 180 CGAAGACGGGAAGGCTCTTTGTCAATCTTGTTATTCAACAC-ATTACAATTGTGCCCCTA 238
Query 239 ATGGCCATCAAACTCAAGTCGTC-------T----T-CGCTAACATGAATAATCAACACC 286
|||||||||| | |||| ||||| | | | |||||| |||| ||||||||
Sbjct 239 ATGGCCATCACATTCAAATCGTCAGACGCATACAATACCCTAACAACAATACTCAACACC 298
Query 287 ATGATCATGCACATATGCCTCATGTGGTTCACCATAACAATAACAATAATCATCAGCAGC 346
||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||
Sbjct 299 ATGATCATGCACATATGCCTCATGTGGTTGACCATAACAATAATAATAATCGTCAGCAGC 358
Query 347 A------G---CATGTG--------GG-TGGTCACCA--A-AGAAGAGCAGAGATGTTTG 385
| | |||||| || ||||||||| | |||||||||| ||||||||
Sbjct 359 ATCATCAGGAGCATGTGCAACATCAGGGTGGTCACCAGCAGAGAAGAGCAGGGATGTTTG 418
Query 386 AGAGGAGCTGCCACGGGGATAACAATTGCGAGAGATGGATGTTTGCAATGAGATGTGAGT 445
||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||| |
Sbjct 419 AGAGGAGCTGCCATGGGGATAACAATTGCGAGAGATGGATGCTTGCAATGGGATGTGACT 478
Query 446 TATGCGTAGCTTCGAATTCAAATGCTGTTGTTTATTGTCCTACACACAACCAGATTCTAT 505
| ||| ||||||||| |||||||||||||||||||||| || |||||||| || ||||||
Sbjct 479 TGTGCTTAGCTTCGAGTTCAAATGCTGTTGTTTATTGTTCTGCACACAACAAGCTTCTAT 538
Query 506 GCGAT-AGTTGCGACCGGATGATTCACAGTCACGAGGACGCGGTGCCGCCGCATTCGAGG 564
||||| | |||||||||||||| ||||| ||| |||| | |||| ||||||||||| |||
Sbjct 539 GCGATGA-TTGCGACCGGATGACTCACATTCAAGAGGCCACGGTACCGCCGCATTCAAGG 597
Query 565 TGTAAGCTTTGCGTAATCTGCAAGAGACCTTCTCGCCGTTTTCTCATTGGCGGCTATCAG 624
|||||||||||||||| |||||||||||||||| || ||||||||||||||||||||
Sbjct 598 TGTAAGCTTTGCGTAAACTGCAAGAGACCTTCTAGCAAATTTCTCATTGGCGGCTATCAT 657
Query 625 TTTAATTTCCCACCGGTTCATCCTCCTGCGGCAGAGGGGATTCCAGT-TACGCCCCCAAC 683
||||||||||||| |||||||||||| ||||| |||| |||||||| | ||||||| |
Sbjct 658 TTTAATTTCCCACGGGTTCATCCTCCGGCGGCCGAGGAGATTCCAGCGT-CGCCCCCTAG 716
Query 684 AGAACTACCTCAACAAGATATTAATTATGATTATCTAGATGATGTTGATGATTTTTCTTG 743
|||||| |||||||||||||||||| |||| || |||||||| |||||| ||||||||
Sbjct 717 AGAACTCCCTCAACAAGATATTAATG--GATT-TCAAGATGATGATGATGACTTTTCTTG 773
Query 744 GTTTG 748
|||||
Sbjct 774 GTTTG 778
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27867852327
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5