BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G60280.1
Length=1044
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925028 jgi|Araly1|925028|scaffold_200589.1 1384 0.0
Ahg475292 jgi|Araly1|475292|fgenesh2_kg.2__422__AT1G60350.1 717 0.0
Ahg338342 jgi|Araly1|338342|fgenesh1_pg.C_scaffold_2000441 713 0.0
Ahg925045 jgi|Araly1|925045|scaffold_200606.1 688 0.0
> Ahg925028 jgi|Araly1|925028|scaffold_200589.1
Length=1042
Score = 1384 bits (749), Expect = 0.0
Identities = 935/1024 (91%), Gaps = 16/1024 (2%)
Strand=Plus/Plus
Query 32 TTATCAAA-GACGAACTGATGAAAGCAGAAGACGAAGCAACTTATTGGCTAATCAAAGAA 90
|||| ||| ||||||| ||||||||||||| ||||| |||||||||||| ||||||||
Sbjct 4 TTAT-AAAGGACGAACCAATGAAAGCAGAAGGCGAAGGAACTTATTGGCTGATCAAAGAC 62
Query 91 GAACTGATCAAAGCAGAAGACGATGTAATCATCTCACGTTATCTGAAGCGTATGATCGTT 150
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 63 GAACTGATCAAAGCAGAAGACGATGTAATAATCTCACGTTACCTGAAGCGTATGATCGTT 122
Query 151 AACGGGGATTCGTGGCCTGATCACTTCATCGAAGATGTAGACGTGTTCAACAAGAATCCA 210
||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 123 AACGGAGATTCATGGCCTGATCACTTCATCGAAGACGTAGACGTGTTCAACAAGAATCCA 182
Query 211 AATGAGGAGTTTCATTCTCAGAGCCCTAGATTCGTGATCGTTAAACCACGAACAGAGAAT 270
|||||||||||| |||||| |||| |||||||| ||||||||||| ||||||||||| |
Sbjct 183 AATGAGGAGTTTTATTCTCCGAGCACTAGATTCCTGATCGTTAAAACACGAACAGAGGCT 242
Query 271 TGTGGTAGAACCGATGGATGTCAATCTGGTTGCTGGAGGATCATTGGTCGTGATAAACTG 330
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 243 TGTGGTAGAACCGATGGATGTGAATCGGGTTGCTGGAGGATCATTGGTCGTGATAAACTG 302
Query 331 ATAAAATCGAAGGAGACTGGGAAGATTCTAGGGTTCAAGAAGATTCTCAAGTTCTGCCTA 390
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 303 ATAAAATCGAAGGAGACTGGGAATATTCTAGGGTTCAAGAAGATTCTCAAGTTCTGCTTA 362
Query 391 AAGAAGAAACCTAGAGAATACAAGAGAAGTTGGGTAATGGAAGAGTACAGGCTTAACAAT 450
|||| |||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||
Sbjct 363 AAGACGAAACCTAGAGAATACAAGAGAAGTTGGGTAATGGAAGAGTATAGGGTTACCAAT 422
Query 451 AACTTGAACT-GCAAGCAAGATCATGTGATTTGCAAGATTCGGTTTATGTTCGATGCTGA 509
|||||||||| | |||||||||||||| |||||||||||||||||| ||||||| |||||
Sbjct 423 AACTTGAACTCG-AAGCAAGATCATGTCATTTGCAAGATTCGGTTTCTGTTCGAAGCTGA 481
Query 510 AATCAGTTTCTTGCTAGCCAAGCATTTCTCGTGTCTCTCCACTAGATCACCGCTTCCTGC 569
|||||||||||||| ||||||||||| |||| |||||||||||| ||||||| ||||||
Sbjct 482 GATCAGTTTCTTGCTTGCCAAGCATTTATCGTATCTCTCCACTAGGTCACCGCGTCCTGC 541
Query 570 AAATCAATTGTTGCCAGCTTATGGAGTCTGTTTCTTCGATTCAGAAGCGGAGGGTGCATT 629
||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||
Sbjct 542 AAATCAATTGTTGCCAGCTTATGGAGTGTGTTTATTCGATACAGAAGCGGAGGGTGCATT 601
Query 630 TTATCTGGAGACGATAATCGGTTATGATGGAAACACTTGGCCTAGCTACGTTACCAACGA 689
||||||| ||| |||||||| ||| ||||||||||||||||||||||||||||| ||| |
Sbjct 602 TTATCTGCAGAAGATAATCGATTACGATGGAAACACTTGGCCTAGCTACGTTACGAACAA 661
Query 690 TGTGTACCGTTTGCATCCGTTGACGCTTGTGGATCCTCAAGATGACAAGTTTAAAGAGTT 749
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 662 TGTGTACCGTTTGCATCCATCGACGCTTGTGGATCCTCAAGATGACAAGTTTAAAGAGTT 721
Query 750 CGGAACCTGTATCTTTGCTAACAGGACAAAGACTTGTGGTAAAACCGATGAATGTGATGG 809
|||||| ||||||||||||||| |||||||| |||||||||||||||||||||| |||||
Sbjct 722 CGGAACATGTATCTTTGCTAACCGGACAAAGGCTTGTGGTAAAACCGATGAATGCGATGG 781
Query 810 TGGTGGTTGCTGGAGGATCGTAGAAGGTCATAGAGTTATCAAGTCAAAA---GGTAAGGT 866
|||||||| ||||| ||||||||||| |||||||| ||||||||||||| || || |
Sbjct 782 TGGTGGTTACTGGACGATCGTAGAAGTTCATAGAGGTATCAAGTCAAAAACAGGGGAGAT 841
Query 867 TCTTGGTTACAGGAGGATTTTTCAATTTTCGGAAAATGAGGAACCAAGAAATGTTTGTGA 926
|||||||||||| ||| ||||||| || ||||||||||||||||||| || |||||||||
Sbjct 842 TCTTGGTTACAGTAGGGTTTTTCAGTTATCGGAAAATGAGGAACCAATAACTGTTTGTGA 901
Query 927 AGGAGAAGATCCGAA-GAAAACTGCTTGG-TTCATAGAAGAGTATAGGCCTGACGAAAAT 984
|||||||||| ||| |||| | |||||| || |||||||||||||||| |||||||||
Sbjct 902 AGGAGAAGATGTGAATGAAA-CAGCTTGGATT-ATAGAAGAGTATAGGCTTGACGAAAAG 959
Query 985 AATAAGAAGGATAAAGTGTTATGCGTTATCAAGT---TCTTAATCCCACTCAA-CCAAAG 1040
|| ||||||||||||||||| |||||||||||| ||||||||||||| || || | |
Sbjct 960 AAGAAGAAGGATAAAGTGTTGTGCGTTATCAAGAAGATCTTAATCCCACT-AAGCCCACG 1018
Query 1041 GTAA 1044
||||
Sbjct 1019 GTAA 1022
> Ahg475292 jgi|Araly1|475292|fgenesh2_kg.2__422__AT1G60350.1
Length=957
Score = 717 bits (388), Expect = 0.0
Identities = 772/946 (82%), Gaps = 72/946 (8%)
Strand=Plus/Plus
Query 58 GAAGACGAAGCAACTTATTG-GCTAATCAAAGAAGAACTGATCAAA-GCAGAAGACGATG 115
|||||||| ||| ||| ||| |||||||||| |||||| | ||| ||||||||||| |
Sbjct 4 GAAGACGACGCAGCTT-TTGATCTAATCAAAGCCGAACTG-TTAAATGCAGAAGACGAGG 61
Query 116 TAATCATCTCACGTTATCTGAAGCGTATGATCGTTAACGGGGATTCGTGGCCTGATCACT 175
|||| |||| |||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 62 TAATAATCTTACGTTATCTGAAGCGTATGATCGTTAACGGAGATTCTTGGCCTGATCACT 121
Query 176 TCATCGAAGATGTAGACGTGTTCAACAAGAATCCAAATGAGGAGTTTC-ATTCTCAGAGC 234
||||| |||| | |||||||||||||||||||||||||| || | ||| || || |||||
Sbjct 122 TCATCAAAGACGCAGACGTGTTCAACAAGAATCCAAATGTGGTG-TTCGATGCTGAGAGC 180
Query 235 CCTAGATTCGTGATCGTTAAACCACGAACAGAGAATTGTGGTAGAACCGATGGATGTCAA 294
||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||| ||
Sbjct 181 CCTAGCTTCGTGATCGTTAAACCACGAACAGAGATTTGTGGTGGAACCGATGGATGTGAA 240
Query 295 TCTGGTTGCTGGAGGATCATTGGTCGTGATAAACTGATAAAATCGAAGGAGACTGGGAAG 354
|||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||
Sbjct 241 TCTGGTTGCTGGAGGATCATGGGTCGTGAGAAACTGATAAAATCGAAGAAGACTGGGAAG 300
Query 355 ATTCTAGGGTTCAAGAAGATTCTCAAGTTCTGCCTAAAGAAGAAACCTAGAGAATACAAG 414
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 301 ATTCTAGGGTTCAAGAAGATTCTCAAGTTCTGCCTAAAGAGGAAACCTAGAGAATACAAG 360
Query 415 AGAAGTTGGGTAATGGAAGAGTACAGGCTTAACAATAACTTGAACTGCAAGCAAGATCAT 474
||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||
Sbjct 361 AGAAGTTGGGTAATGGAAGAGTATAGGCTTACCAATAACTTGAACTGGAAGCAAGATCAT 420
Query 475 GTGATTTGCAAGATTCGGTTTATGTTCGA-TGCTGAAATCAGTTTCTTGCTAGCCAAGCA 533
|||||||| |||||||| ||| |||| || | | ||||| |||||| |||||||||||||
Sbjct 421 GTGATTTGTAAGATTCGATTTTTGTTTGAATCC-GAAATTAGTTTCGTGCTAGCCAAGCA 479
Query 534 TTTCTCGTGTCTCTCCA-CTAGA-TCACCGCTTCCT-GCAAATCAATTGTTGCCAGCTTA 590
||||| | || || | ||| |||| ||||| | || | | |||||||||||||
Sbjct 480 TTTCTA----CACTACATC-AGAATCAC---TTCCTCGTAA-TGAGCTGTTGCCAGCTTA 530
Query 591 TGGAGTCTGTTTCTTC-GATTCAGAAGCGGAGGGTGCATTTTATCTGGAGACGATAATCG 649
|||| || |||| || ||| | ||| |||| | || |||||||| |||||| || |
Sbjct 531 TGGATTCC-TTTCATCAGATAAACAAGTAGAGGATATATCTTATCTGGTGACGATCAT-G 588
Query 650 G-TTATGATGGA--AA-C-ACTTGGCCTAGCTACGTTACCAACGATGTGTACCGTTTGCA 704
|| ||| ||| || | | |||||||||||||||||||||||| ||||| | ||||
Sbjct 589 ACTTCTGAAGGATTAAACGA-TTGGCCTAGCTACGTTACCAACGACGTGTATTGCCTGCA 647
Query 705 TCCGTTG-ACGCTTGTGGATCCTCAAGAT-GACAAGTTTAAAGAGTT-CGGAACC-TGTA 760
||| || | ||||| ||||| ||||||| | | |||| | | || ||||||| | ||
Sbjct 648 TCCACTGGA-GCTTGCGGATCTTCAAGATCGG-ATGTTTCAT-ATTTACGGAACCCT-TA 703
Query 761 TCTT-TGCTAACAGGACAAAGACTTGTGGTAAAACCGAT-GAATGTGATGGTGGTGGTTG 818
|||| | |||||| | ||||||||||||||||||| || || |||||||| |
Sbjct 704 TCTTCT-CTAACA--A----GACTTGTGGTAAAACCGATAGA-TGCAATGGTGGT--TA- 752
Query 819 CTGGAGGATCGTAGAAG-GTCATAGAGTT-ATCAAGTCAAAA---GGTAAGGTTC-TTGG 872
|||||||||| | | | || ||| || | ||||||||||| || ||| | ||||
Sbjct 753 CTGGAGGATCTT-GCACCGTGATA-AGCTGATCAAGTCAAAGTCCGGGAAGAC-CATTGG 809
Query 873 TTACAGGA-GGATTTTTCAATTT-TCGGAAAATGAGGAACCAA-GAAA-TGTTTGTGAAG 928
|| || || || ||||| || || | |||| ||| || || || | | ||||||| |
Sbjct 810 TTTCAAGAAGG-TTTTT-AAGTTCTATGAAACGGAG-AAGGAAAGATACT-TTTGTGATG 865
Query 929 GAGAAGATCCGAAGAAAACTGCTTGGT-TCATAGAAGAGTATAGGC 973
||||||| ||||| |||| | || | ||||||||||||||||
Sbjct 866 AAGAAGATGTGAAGATAACT--T-GGACT-ATAGAAGAGTATAGGC 907
> Ahg338342 jgi|Araly1|338342|fgenesh1_pg.C_scaffold_2000441
Length=1896
Score = 713 bits (386), Expect = 0.0
Identities = 792/977 (81%), Gaps = 71/977 (7%)
Strand=Plus/Plus
Query 62 ACGAAGCAACTTATTG-GCTAATCAAAGAAGAACTGATCAAA-GCAGAAGACGATGTAAT 119
|||| ||| |||| || ||||||||| | |||||| | ||| ||||||||||| |||||
Sbjct 956 ACGACGCAGCTTA-TGATCTAATCAAACACGAACTG-TTAAACGCAGAAGACGAAGTAAT 1013
Query 120 CATCTCACGTTATCTGAAGCGTATGATCGTTAACGGGGATTCGTGGCCTGATCACTTCAT 179
|||||||||||||||||| |||||||||| ||||| ||||| |||||||||||||||||
Sbjct 1014 AATCTCACGTTATCTGAAGGGTATGATCGTCAACGGAGATTCATGGCCTGATCACTTCAT 1073
Query 180 CGAAGATGTAGACGTGTTCAACAAGAATCCAAATGAGGAGTTTC-ATTCTCAGAGCCCTA 238
|| ||| | | |||| |||||||||||||||||||||| | ||| ||||| |||| ||||
Sbjct 1074 CGTAGACGCAAACGTATTCAACAAGAATCCAAATGAGGTG-TTCAATTCTGAGAGACCTA 1132
Query 239 GATTCGTGATCGTTAAACCACGAACAGAGAATTGTGGTAGAACCGATGGATGTCAATCTG 298
||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||
Sbjct 1133 GATTCGTGATCGTTAAACCACGAACAGAGGCTTGTGGTAAAACCGATGGATGTGAATCTG 1192
Query 299 GTTGCTGGAGGATCATTGGTCGTGATAAACTGATAAAATCGAAGGAGACTGGGAAGATTC 358
|||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 1193 GTTGCTGGAGGATCATGGGTCGTGATAAACTGATAAAGTCGGAGGAGACTGGGAAGATTC 1252
Query 359 TAGGGTTCAAGAAGATTCTCAAGTTCTGCCTA-AAGAAGAAACCTAGAGAATACAAGAGA 417
||||||||||||||||||||||||||||| | |||| |||||| |||||||||||||||
Sbjct 1253 TAGGGTTCAAGAAGATTCTCAAGTTCTGCA-AGAAGACGAAACCAAGAGAATACAAGAGA 1311
Query 418 AGTTGGGTAATGGAAGAGTACAGGCTTAACAATAACTTGAACTGCAAGCAAGATCATGTG 477
|||||||||||||||||||| ||||||| ||| ||||||||||| ||||||||||||||
Sbjct 1312 AGTTGGGTAATGGAAGAGTATAGGCTTACCAAGAACTTGAACTGGAAGCAAGATCATGTC 1371
Query 478 ATTTGCAAGATTCGGTTTATGTTCGATGCTGAAATCAGTTTCTTGCTAGCCAAGCATTTC 537
||||||||||||||||| ||||| || ||||| || |||||||||||| |||||||||
Sbjct 1372 ATTTGCAAGATTCGGTTAATGTTTGAAGCTGAGATTAGTTTCTTGCTAAAGAAGCATTTC 1431
Query 538 TCGTGTCTCTCCA-CTAGATCACCGCTTCCTGCAAATCAATTGTTGCCAGCTTATGGAGT 596
| | || || | ||| | || ||| || |||| ||||||||| |||||||| |
Sbjct 1432 TA----CACTACATC-AGA--ATCGGTTCTTGGAAATGGGTTGTTGCCATCTTATGGA-T 1483
Query 597 CTGTTTCTTCGATT-CAG-AAGCGGAGGGTGCATTTTATCTGGAGACGATAATCGG-TTA 653
| | | || | | | | ||| ||||| || || |||| ||||||||||| | | ||
Sbjct 1484 AT-T--CATCAACTAC-GCAAGAGGAGGATGAATCTTATATGGAGACGATAGT-GACTTG 1538
Query 654 TGATGGAAAC-ACTTGGCCTAGCTACGTTACCAACGATGTGTACCGTTTGCATCCGTTG- 711
||| |||||| | |||||||||||||||||||||||| |||||| || ||||||| ||
Sbjct 1539 TGAAGGAAACTA-TTGGCCTAGCTACGTTACCAACGACGTGTACTGTCTGCATCCAATGG 1597
Query 712 ACGCTTGTGGATCCTCAAGATGACAA-GTTTAAAGAGTT-CGGAACCTGTATCTTTGCTA 769
|| |||||||||||||||||| | | |||| | || || ||||||||| ||||| ||||
Sbjct 1598 AC-CTTGTGGATCCTCAAGATC-CGATGTTTCATGA-TTACGGAACCTGCATCTTCGCTA 1654
Query 770 ACAGGACAAAGACTTGTGGTAAAACCGATGAATGTGATGGTGGTGGTTGCTGGAGGATCG 829
|| || |||||||||| |||| ||| |||| ||||||||| | ||||| ||||
Sbjct 1655 AC-GG-----GACTTGTGGTGAAACTGATAAATGCGATGGTGGT--TA-CTGGAAGATCC 1705
Query 830 TAGAAGGTCATAGAGTTATCA-AGTCAAAAGGTAAGGTTCTTGGTTACAGGA-GGATTTT 887
| | | ||| || | | | | ||| || |||||| ||||| || || || ||||
Sbjct 1706 T-GCAC--CAT-GA-TAAGCTGA-TCACCGGG-AAGGTTAATGGTTTCAAGAAGG-TTTT 1757
Query 888 TCAA-TTTTCGGAAAATGAGGAACCAAGAAATGTTTGTGAAGGAGAAGATCC-GAA-GAA 944
| || |||| |||| | ||| || ||||||| ||||| ||| | | ||| | |
Sbjct 1758 T-AAGTTTTATGAAAC--ACGAA----GATATGTTTGGGAAGGTGAATA-CGTGAACGTA 1809
Query 945 AACTGCTTGGT-TCATAGAAGAGTATAGGCCT-GACGAAAATAATAAGAAGGATAAAGTG 1002
| || | || | |||||||||||||||| | | |||||| | ||| |||||||||||
Sbjct 1810 A-CT--T-GGACT-ATAGAAGAGTATAGGCTTAG-CGAAAAGGAGAAGGAGGATAAAGTG 1863
Query 1003 TTATGCGTTATCAAGTT 1019
||||||||||||||||
Sbjct 1864 ATATGCGTTATCAAGTT 1880
Score = 669 bits (362), Expect = 0.0
Identities = 773/959 (81%), Gaps = 78/959 (8%)
Strand=Plus/Plus
Query 81 AATCAAAGAAGAACTGATCAAA-GCAGAAGACGATGTAATCATCTCACGTTATCTGAAGC 139
|||||||| |||||| | ||| ||||||||||| ||||| |||||||||||||||||||
Sbjct 24 AATCAAAGCCGAACTG-TTAAACGCAGAAGACGAAGTAATAATCTCACGTTATCTGAAGC 82
Query 140 GTATGATCGTTAACGGGGATTCGTGGCCTGATCACTTCATCGAAGATGTAGACGTGTTCA 199
|||||||||||||||| ||||| |||||| |||||||||| ||| | | |||||||||||
Sbjct 83 GTATGATCGTTAACGGAGATTCTTGGCCTAATCACTTCATTGAATACGCAGACGTGTTCA 142
Query 200 ACAAGAATCCAAATGAGGAGT-TTCA-TTCTCAGAGCCCTAGATTCGTGATCGTTAAACC 257
||||| ||||||||||| | | |||| |||| |||| |||||||||||||||||||||||
Sbjct 143 ACAAGGATCCAAATGAG-A-TATTCAGTTCTGAGAGACCTAGATTCGTGATCGTTAAACC 200
Query 258 ACGAACAGAGAATTGTGGTAGAACCGATGGATGTCA--A-TCTGGTTGCTGGAGGATCAT 314
||||||| ||||||||||| ||||||||||||| | | ||||||||||||||||||||
Sbjct 201 TCGAACAGGGAATTGTGGTAAAACCGATGGATGTGATGAATCTGGTTGCTGGAGGATCAT 260
Query 315 TGG-TCGTGATAAACTGATAAAATCGAAGGAGACTGGGAAGATTCTAGGGTTCAAGAAGA 373
|| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 261 -GGCTCGTGATAAACTGATAAAGTCGGAGGAGACTGGGAAGATTCTAGGGTTCAAGAAGA 319
Query 374 TTCTCAAGTTCTGCCTAAAGAAGAAACCTAGAGAATACAAGAGAAGTTGGGTAATGGAAG 433
| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 320 TCCTCAAGTTCTGCCTAAAGTGGAAACCTAGAGAATACAAGAGGAGTTGGGTAATGGAAG 379
Query 434 AGTACAGGCTTAAC-AATAACTTGAACTGCAAGCAAGATCATGTGATTTGCAAGATTCGG 492
|||| |||||| | |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 380 AGTATAGGCTTC-CTAATAACTTGAACTGGAAGCAAGATCATGTGATTTGCAAGATTCGG 438
Query 493 TTTATGTTCGATGCTGAAATCAGTTTCTTGCTAGCCAAGCATTTCTCGTGTCTCTCCA-C 551
||| |||| || |||||||| ||||||||||||||||||||||||| | || || |
Sbjct 439 TTTCTGTTTGAAGCTGAAATTAGTTTCTTGCTAGCCAAGCATTTCTA----CACTACATC 494
Query 552 TAGA-TCACCGCTTCCT-GCAAATCAATTGTTGCCAGCTTATGGAGTCTGTTTCTTCGAT 609
||| |||| ||||| | || | | ||||||||||||||||| ||| | | | ||
Sbjct 495 -AGAATCAC---TTCCTCGTAA-TGAGCTGTTGCCAGCTTATGGATTCTATC-CA-C-AT 546
Query 610 TCAGAAGCG-GAGG--G-TGCATTTTATCTGGAGACGATAATCGG-TTATGATGGAAAC- 663
|| ||| | |||| | || || |||| || ||||||||| | || ||| ||||||
Sbjct 547 TCTGAA-CAAGAGGATGATGAATCTTATTTGTTGACGATAAT-GACTTCTGAAGGAAACG 604
Query 664 ACTTGGCCTAGCTACGTTACCAACGATGTGTACCGTTTGCATCCGTT-GACGCTTGTGGA 722
| |||||||||||||||||||||| | ||||| || ||||||| || || |||||||||
Sbjct 605 A-TTGGCCTAGCTACGTTACCAACAACGTGTATTGTCTGCATCCTTTCGA-GCTTGTGGA 662
Query 723 TCCTCAAGAT-GACAAGTTTAAAGAGTT-CGGAACCTGTATCTTTGCTAACAGGACAAAG 780
|| || |||| | | |||| || || |||||| || |||| ||||||| | |
Sbjct 663 TCTTCGAGATCGG-ATGTTTTGTGA-TTACGGAACATGCATCTACGCTAACA--A----G 714
Query 781 ACTTGTGGTAAAACCGATGAATGTGATGGTGGTGGTTGCTGGAGGATCGTAGAAG-GTCA 839
||| ||||| |||| ||| | | | || |||||||| ||||| |||| | | | || |
Sbjct 715 ACTGGTGGTGAAACGGAT-A-TAT-ATAATGGTGGTTACTGGAAGATCCT-GCACCGTGA 770
Query 840 TAGAGTT-ATCAAGTCAAAA---GGTAAGGTTC-TTGGTTACAGGA-GGATTTTTCAATT 893
||| | ||||||||||| || ||| | |||||| || || || ||||||| ||
Sbjct 771 TAG-GCCGATCAAGTCAAAGTCCGGGAAGAC-CATTGGTTTCAAGAAGG-TTTTTCAGTT 827
Query 894 TTCGGAAAATGAG-GA-ACCAAGAAATGTTTGTGAA-GGAGAAGATCCGAAGAAAACTGC 950
|| ||| ||| || | ||||| | ||||| || ||| |||| ||||| | ||
Sbjct 828 TTATGAACCGGAGAGAGA--AAGAATTTTTTGT-AATGGACAAGAAGTGAAGATA---GC 881
Query 951 TTGG-TTCATAGAAGAGTATAGGCCT-GACGAAAATAAT-AAGAAGGATAAAGTGTTAT 1006
|||| || |||||||||||||||| | | |||||| | ||| || ||||||||||||
Sbjct 882 TTGGATT-ATAGAAGAGTATAGGCTTAG-CGAAAAGG-TGAAGCAGAATAAAGTGTTAT 937
> Ahg925045 jgi|Araly1|925045|scaffold_200606.1
Length=982
Score = 688 bits (372), Expect = 0.0
Identities = 602/710 (85%), Gaps = 28/710 (4%)
Strand=Plus/Plus
Query 81 AATCAAAGAAGAACTGATCAAA-GCAGAAGACGATGTAATCATCTCACGTTATCTGAAGC 139
|||||||| |||||| | ||| ||||||||||| ||||| |||||||||||||||||||
Sbjct 44 AATCAAAGCCGAACTG-TTAAACGCAGAAGACGAAGTAATAATCTCACGTTATCTGAAGC 102
Query 140 GTATGATCGTTAACGGGGATTCGTGGCCTGATCACTTCATCGAAGATGTAGACGTGTTCA 199
|||||||||||||||| ||||| ||||||| | ||||||||||||| | | |||||||||
Sbjct 103 GTATGATCGTTAACGGAGATTCTTGGCCTGCTAACTTCATCGAAGACGCAAACGTGTTCA 162
Query 200 ACAAGAATCCAAATGAGGAGTTTCATTCTCAGAGCCCTAGATTCGTGATCGTTAAACC-A 258
||||||||||| ||| ||||||| ||||| | ||| |||| ||||||||||||||||| |
Sbjct 163 ACAAGAATCCATATGTGGAGTTTGATTCTGATAGCACTAGCTTCGTGATCGTTAAACCTA 222
Query 259 CGAACAGAGAATTGTGGTAGAACCGATGGATGTCAATCTGGTTGCTGGAGGATCATTGGT 318
|||||||| |||||||| ||||||||||||| |||| ||||||||||||||||| |||
Sbjct 223 -GAACAGAGGCTTGTGGTAAAACCGATGGATGTGAATCGGGTTGCTGGAGGATCATCGGT 281
Query 319 CGTGATAAACTGATAAAATCGAAGGAGACTGGGAAGATTCTAGGGTTCAAGAAGATTCTC 378
||||||||||| || |||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 282 CGTGATAAACTTATCAAATCGAAAGCGACTGGGAAGATTCTAGGGTTCAAGAAGATTCTC 341
Query 379 AAGTTCTGCCTA-AAGAAGAAACCTAGAGAATACAAGAGAAGTTGGGTAATGGAAGAGTA 437
||||||||| | |||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 342 AAGTTCTGCA-AGAAGACGAAACCTAGAGAATACAAGAGAAGTCGGGTAATGGAAGAGTA 400
Query 438 CAGGCTTAACAATAACTTGAACTGCAAGCAAGATCATGTGATTTGCAAGATTCGGTTTAT 497
||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 401 TAGGCTTACCAATAACTTGAACTGGAAGCAAGATCATGTGATTTGCAAGATTCGGTTTCT 460
Query 498 GTTCGATGCTGAAATCAGTTTCTTGCTAGCCAAGCATTTCTCGTGTCTCTCCA-CTAGAT 556
||| || ||||| || |||||||||||| |||||||||||| | || || | | ||
Sbjct 461 GTTTGAAGCTGAGATTAGTTTCTTGCTAACCAAGCATTTCTA----CACTACATCAAAAT 516
Query 557 CACCGCTTCCTGCAAATCAATTGTTGCCAGCTTATGGAGTCTGTTTCTTCGATTCAGAAG 616
|||| |||| | || | | ||||||||||||||||| ||| || | | || | |||
Sbjct 517 CACCTCTTCGT--AA-TGAGCTGTTGCCAGCTTATGGATTCTATT-C--CAATGAACAAG 570
Query 617 CGGAGGGTGCATTTTATCTG-GAGACGATAATCG-GTTATGATGGAAAC-ACTTGGCCTA 673
| | | || ||||||| || | || |||||| | ||| ||| |||||| | ||||||||
Sbjct 571 AGAATGATGAATTTTAT-TGTGTGAAGATAAT-GAGTTCTGAAGGAAACGA-TTGGCCTA 627
Query 674 GCTACGTTACCAACGATGTGTACCGTTTGCATCCGTTG-ACGCTTGTGGATCCTCAAGAT 732
|||||||||||||| | ||||| || ||||||| ||| | |||||||||||||||||||
Sbjct 628 GCTACGTTACCAACAACGTGTATTGTCTGCATCCATTGGA-GCTTGTGGATCCTCAAGAT 686
Query 733 GACAAGTTTAAAGAGTT-CGGAACCTGTATCTTTGCTAACAGGAC-AAAG 780
|| |||||| || ||| ||||| ||| || || ||||||| ||| ||||
Sbjct 687 GAGAAGTTTCAAC-GTTTCGGAATCTGCATATTCGCTAACAAGACTAAAG 735
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38847252423
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5