BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G60300.1
Length=969
Score E
Sequences producing significant alignments: (Bits) Value
Ahg338342 jgi|Araly1|338342|fgenesh1_pg.C_scaffold_2000441 1182 0.0
Ahg475292 jgi|Araly1|475292|fgenesh2_kg.2__422__AT1G60350.1 1085 0.0
Ahg925045 jgi|Araly1|925045|scaffold_200606.1 1003 0.0
Ahg925028 jgi|Araly1|925028|scaffold_200589.1 743 0.0
> Ahg338342 jgi|Araly1|338342|fgenesh1_pg.C_scaffold_2000441
Length=1896
Score = 1182 bits (640), Expect = 0.0
Identities = 851/949 (90%), Gaps = 30/949 (3%)
Strand=Plus/Plus
Query 11 ACGACGCAGCTTATGATCTAATCAAACACGAACTGTTATACTCAGAAGACGAAGTAATAA 70
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 956 ACGACGCAGCTTATGATCTAATCAAACACGAACTGTTAAACGCAGAAGACGAAGTAATAA 1015
Query 71 TCTCACGTTATCTGAAGGGTATGGTCGTTAACGGAGATTCTTGGCCAGATCACTTCATCG 130
||||||||||||||||||||||| |||| ||||||||||| ||||| |||||||||||||
Sbjct 1016 TCTCACGTTATCTGAAGGGTATGATCGTCAACGGAGATTCATGGCCTGATCACTTCATCG 1075
Query 131 AAGACGCAAACGTGTTCACCAAGAATCCAGATAAGGTGTTCAATTCTGAGAGACCTAGAT 190
|||||||||||| |||| |||||||||| || |||||||||||||||||||||||||||
Sbjct 1076 TAGACGCAAACGTATTCAACAAGAATCCAAATGAGGTGTTCAATTCTGAGAGACCTAGAT 1135
Query 191 TCGTGATCGTTAAACCACGAACAGAGGCTTGTGGTAAAACCGATGGATGTGATTCGGGTT 250
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1136 TCGTGATCGTTAAACCACGAACAGAGGCTTGTGGTAAAACCGATGGATGTGAATCTGGTT 1195
Query 251 GCTGGAGGATCATTGGTCGTGATAAACTGATAAAGTCGGAGGAGACTGGGAAGATTCTAG 310
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 GCTGGAGGATCATGGGTCGTGATAAACTGATAAAGTCGGAGGAGACTGGGAAGATTCTAG 1255
Query 311 GGTTCAAGAAGATACTCAAGTTTTGCCTA-AAGAGGAAACCTATAGACTACAAGAGAAGT 369
||||||||||||| |||||||| ||| | |||| |||||| | ||| ||||||||||||
Sbjct 1256 GGTTCAAGAAGATTCTCAAGTTCTGCA-AGAAGACGAAACCAAGAGAATACAAGAGAAGT 1314
Query 370 TGGGTAATGGAAGAGTATAGGCTTACCAATAACTTGAACTGGAAGCAAGATCATGTGATT 429
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1315 TGGGTAATGGAAGAGTATAGGCTTACCAAGAACTTGAACTGGAAGCAAGATCATGTCATT 1374
Query 430 TGCAAAATTCGGTTTATGTTTGAAGCTGAAATTAGTTTCTTGCTAA-GCAAGCATTTCTA 488
||||| |||||||| |||||||||||||| |||||||||||||||| | |||||||||||
Sbjct 1375 TGCAAGATTCGGTTAATGTTTGAAGCTGAGATTAGTTTCTTGCTAAAG-AAGCATTTCTA 1433
Query 489 CACTACATCAGAATCGGTTCTTGAAAATGAGCTGTTGCCATCTTATGGATATTATTTATC 548
||||||||||||||||||||||| ||||| | ||||||||||||||||||||| |||
Sbjct 1434 CACTACATCAGAATCGGTTCTTGGAAATGGGTTGTTGCCATCTTATGGATATTC---ATC 1490
Query 549 CAA-TACACAAGAGGAGGATGAATTTTATCTGGACG-CGATAATGACTTCG-GAAGGAAA 605
|| ||| |||||||||||||||| |||| |||| | ||||| |||||| | ||||||||
Sbjct 1491 -AACTACGCAAGAGGAGGATGAATCTTATATGGA-GACGATAGTGACTT-GTGAAGGAAA 1547
Query 606 CGAGTGGCCTAGCTACGTTACCAACAACGTGTACTGTCTGCATCCATTGGAGCTTGTGGA 665
| | ||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||
Sbjct 1548 CTATTGGCCTAGCTACGTTACCAACGACGTGTACTGTCTGCATCCAATGGACCTTGTGGA 1607
Query 666 TCTTCAAGATCGGATGTTTAATGATTACGGAACCTGCATCTTCGCTAACAAGACTTGTGG 725
|| |||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1608 TCCTCAAGATCCGATGTTTCATGATTACGGAACCTGCATCTTCGCTAACGGGACTTGTGG 1667
Query 726 TGAAACTGATAAATGCGATGGTGGTTACTGGAAGATCCTGCACGGTGATAAGCTGATCAA 785
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1668 TGAAACTGATAAATGCGATGGTGGTTACTGGAAGATCCTGCACCATGATAAGCTGATCA- 1726
Query 786 GTCAAATTTCGGAAAGGTCATTGGTTTCAAGAAGGTATTTGAGTTCTATGAAACGGTGAG 845
| ||| ||||| | ||||||||||||||| ||| |||| |||||||| |
Sbjct 1727 --C------CGGGAAGGTTAATGGTTTCAAGAAGGTTTTTAAGTTTTATGAAAC----A- 1773
Query 846 ACAAATATATCTTTGTGATGGAGAAGAAGTGA-CGGTAACTTGGACTATACAAGAGTATA 904
| || |||| |||| || || ||| | |||| || |||||||||||||| |||||||||
Sbjct 1774 -CGAAGATATGTTTGGGAAGGTGAATACGTGAACG-TAACTTGGACTATAGAAGAGTATA 1831
Query 905 GGCTTAGCAAAAACGTGAAGCAGAATAAAGTGTTGTGCGTTATCAAGTT 953
|||||||| |||| | |||| || |||||||| | ||||||||||||||
Sbjct 1832 GGCTTAGCGAAAAGGAGAAGGAGGATAAAGTGATATGCGTTATCAAGTT 1880
Score = 1107 bits (599), Expect = 0.0
Identities = 831/939 (88%), Gaps = 31/939 (3%)
Strand=Plus/Plus
Query 17 CAGCTTATGATCTAATCAAA-CACGAACTGTTATACTCAGAAGACGAAGTAATAATCTCA 75
|||||||||||| ||||||| | |||||||||| || |||||||||||||||||||||||
Sbjct 11 CAGCTTATGATCGAATCAAAGC-CGAACTGTTAAACGCAGAAGACGAAGTAATAATCTCA 69
Query 76 CGTTATCTGAAGGGTATGGTCGTTAACGGAGATTCTTGGCC-AGATCACTTCATCGAAGA 134
|||||||||||| ||||| |||||||||||||||||||||| | |||||||||| ||| |
Sbjct 70 CGTTATCTGAAGCGTATGATCGTTAACGGAGATTCTTGGCCTA-ATCACTTCATTGAATA 128
Query 135 CGCAAACGTGTTCACCAAGAATCCAGATAAGGTGTTCAATTCTGAGAGACCTAGATTCGT 194
|||| ||||||||| |||| ||||| || || | |||| |||||||||||||||||||||
Sbjct 129 CGCAGACGTGTTCAACAAGGATCCAAATGAGATATTCAGTTCTGAGAGACCTAGATTCGT 188
Query 195 GATCGTTAAACCACGAACAGAGG-CTTGTGGTAAAACCGATGGATGTGAT---TCGGGTT 250
|||||||||||| ||||||| || ||||||||||||||||||||||||| || ||||
Sbjct 189 GATCGTTAAACCTCGAACAG-GGAATTGTGGTAAAACCGATGGATGTGATGAATCTGGTT 247
Query 251 GCTGGAGGATCATTGG-TCGTGATAAACTGATAAAGTCGGAGGAGACTGGGAAGATTCTA 309
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 248 GCTGGAGGATCA-TGGCTCGTGATAAACTGATAAAGTCGGAGGAGACTGGGAAGATTCTA 306
Query 310 GGGTTCAAGAAGATACTCAAGTTTTGCCTAAAGAGGAAACCTATAGACTACAAGAGAAGT 369
|||||||||||||| |||||||| ||||||||| ||||||||| ||| |||||||| |||
Sbjct 307 GGGTTCAAGAAGATCCTCAAGTTCTGCCTAAAGTGGAAACCTAGAGAATACAAGAGGAGT 366
Query 370 TGGGTAATGGAAGAGTATAGGCTTACC-AATAACTTGAACTGGAAGCAAGATCATGTGAT 428
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 367 TGGGTAATGGAAGAGTATAGGCTT-CCTAATAACTTGAACTGGAAGCAAGATCATGTGAT 425
Query 429 TTGCAAAATTCGGTTTATGTTTGAAGCTGAAATTAGTTTCTTGCTAAGC-AAGCATTTCT 487
|||||| ||||||||| ||||||||||||||||||||||||||||| || ||||||||||
Sbjct 426 TTGCAAGATTCGGTTTCTGTTTGAAGCTGAAATTAGTTTCTTGCTA-GCCAAGCATTTCT 484
Query 488 ACACTACATCAGAATCGGTTCTT-GAAAATGAGCTGTTGCCATCTTATGGATATTATTTA 546
|||||||||||||||| ||| | | || ||||||||||||| ||||||||| | | |
Sbjct 485 ACACTACATCAGAATCACTTCCTCGTAA-TGAGCTGTTGCCAGCTTATGGAT-TC-T--A 539
Query 547 TCCA-ATAC--A-CAAGAGGAGGATGAATTTTATCTG--GACGCGATAATGACTTCGGAA 600
|||| || | | |||||||| ||||||| |||| || |||| ||||||||||| |||
Sbjct 540 TCCACATTCTGAACAAGAGGATGATGAATCTTATTTGTTGACG--ATAATGACTTCTGAA 597
Query 601 GGAAACGAGTGGCCTAGCTACGTTACCAACAACGTGTACTGTCTGCATCCATTGGAGCTT 660
|||||||| ||||||||||||||||||||||||||||| ||||||||||| || ||||||
Sbjct 598 GGAAACGATTGGCCTAGCTACGTTACCAACAACGTGTATTGTCTGCATCCTTTCGAGCTT 657
Query 661 GTGGATCTTCAAGATCGGATGTTTAATGATTACGGAACCTGCATCTTCGCTAACAAGACT 720
|||||||||| ||||||||||||| |||||||||||| ||||||| |||||||||||||
Sbjct 658 GTGGATCTTCGAGATCGGATGTTTTGTGATTACGGAACATGCATCTACGCTAACAAGACT 717
Query 721 TGTGGTGAAACTGATAAATGCGATGGTGGTTACTGGAAGATCCTGCACGGTGATAAGCTG 780
|||||||||| |||| || |||||||||||||||||||||||||| |||||| || |
Sbjct 718 GGTGGTGAAACGGATATATATAATGGTGGTTACTGGAAGATCCTGCACCGTGATAGGCCG 777
Query 781 ATCAAGTCAAATTTCGGAAAGGTCATTGGTTTCAAGAAGGTATTTGAGTTCTATGAAACG 840
||||||||||| | ||| ||| |||||||||||||||||| ||| |||| |||||| ||
Sbjct 778 ATCAAGTCAAAGTCCGGGAAGACCATTGGTTTCAAGAAGGTTTTTCAGTTTTATGAACCG 837
Query 841 GTGAGACAAATATATCTTT-GTGATGGAGAAGAAGTGACGGTAACTTGGACTATACAAGA 899
| |||| ||| | || ||| || ||||| ||||||||| | || |||||| |||| ||||
Sbjct 838 GAGAGAGAAAGA-ATTTTTTGTAATGGACAAGAAGTGAAGATAGCTTGGATTATAGAAGA 896
Query 900 GTATAGGCTTAGCAAAAACGTGAAGCAGAATAAAGTGTT 938
||||||||||||| |||| ||||||||||||||||||||
Sbjct 897 GTATAGGCTTAGCGAAAAGGTGAAGCAGAATAAAGTGTT 935
> Ahg475292 jgi|Araly1|475292|fgenesh2_kg.2__422__AT1G60350.1
Length=957
Score = 1085 bits (587), Expect = 0.0
Identities = 852/975 (87%), Gaps = 38/975 (4%)
Strand=Plus/Plus
Query 6 GGACGACGACGCAGCTTATGATCTAATCAAA-CACGAACTGTTATACT-CAGAAGACGAA 63
||| ||||||||||||| ||||||||||||| | |||||||||| | | ||||||||||
Sbjct 3 GGAAGACGACGCAGCTTTTGATCTAATCAAAGC-CGAACTGTTA-AATGCAGAAGACGAG 60
Query 64 GTAATAATCTCACGTTATCTGAAGGGTATGGTCGTTAACGGAGATTCTTGGCCAGATCAC 123
|||||||||| ||||||||||||| ||||| |||||||||||||||||||||| ||||||
Sbjct 61 GTAATAATCTTACGTTATCTGAAGCGTATGATCGTTAACGGAGATTCTTGGCCTGATCAC 120
Query 124 TTCATCGAAGACGCAAACGTGTTCACCAAGAATCCAGATAAGGTGTTCAATTCTGAGAGA 183
|||||| |||||||| ||||||||| |||||||||| || ||||||| || |||||||
Sbjct 121 TTCATCAAAGACGCAGACGTGTTCAACAAGAATCCAAATGTGGTGTTCGATGCTGAGAGC 180
Query 184 CCTAGATTCGTGATCGTTAAACCACGAACAGAGGCTTGTGGTAAAACCGATGGATGTGAT 243
||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 181 CCTAGCTTCGTGATCGTTAAACCACGAACAGAGATTTGTGGTGGAACCGATGGATGTGAA 240
Query 244 TCGGGTTGCTGGAGGATCATTGGTCGTGATAAACTGATAAAGTCGGAGGAGACTGGGAAG 303
|| ||||||||||||||||| |||||||| ||||||||||| ||| || |||||||||||
Sbjct 241 TCTGGTTGCTGGAGGATCATGGGTCGTGAGAAACTGATAAAATCGAAGAAGACTGGGAAG 300
Query 304 ATTCTAGGGTTCAAGAAGATACTCAAGTTTTGCCTAAAGAGGAAACCTATAGACTACAAG 363
|||||||||||||||||||| |||||||| ||||||||||||||||||| ||| ||||||
Sbjct 301 ATTCTAGGGTTCAAGAAGATTCTCAAGTTCTGCCTAAAGAGGAAACCTAGAGAATACAAG 360
Query 364 AGAAGTTGGGTAATGGAAGAGTATAGGCTTACCAATAACTTGAACTGGAAGCAAGATCAT 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGAAGTTGGGTAATGGAAGAGTATAGGCTTACCAATAACTTGAACTGGAAGCAAGATCAT 420
Query 424 GTGATTTGCAAAATTCGGTTTATGTTTGAAGCTGAAATTAGTTTCTTGCTAAGC-AAGCA 482
|||||||| || ||||| ||| |||||||| | |||||||||||| ||||| || |||||
Sbjct 421 GTGATTTGTAAGATTCGATTTTTGTTTGAATCCGAAATTAGTTTCGTGCTA-GCCAAGCA 479
Query 483 TTTCTACACTACATCAGAATCGGTTCTT-GAAAATGAGCTGTTGCCATCTTATGGATATT 541
||||||||||||||||||||| ||| | | || ||||||||||||| ||||||||| |
Sbjct 480 TTTCTACACTACATCAGAATCACTTCCTCGTAA-TGAGCTGTTGCCAGCTTATGGAT-TC 537
Query 542 ATTT-ATCCA-ATACACAAG-AGGAGGATGA-ATTTTATCTGGACG-CGATAATGACTTC 596
||| ||| | ||| ||||| || ||||| | || |||||||| | |||| ||||||||
Sbjct 538 CTTTCATC-AGATAAACAAGTAG-AGGAT-ATATCTTATCTGGT-GACGATCATGACTTC 593
Query 597 GGAAGGA--AA-CGAGTGGCCTAGCTACGTTACCAACAACGTGTACTGTCTGCATCCATT 653
|||||| || ||| ||||||||||||||||||||| ||||||| || ||||||||| |
Sbjct 594 TGAAGGATTAAACGATTGGCCTAGCTACGTTACCAACGACGTGTATTGCCTGCATCCACT 653
Query 654 GGAGCTTGTGGATCTTCAAGATCGGATGTTTAATGATT-ACGGAACC-TGCATCTTCGCT 711
|||||||| |||||||||||||||||||||| || ||| |||||||| | |||||| ||
Sbjct 654 GGAGCTTGCGGATCTTCAAGATCGGATGTTTCAT-ATTTACGGAACCCTT-ATCTTCTCT 711
Query 712 AACAAGACTTGTGGTGAAACTGATAAATGCGATGGTGGTTACTGGAAGATCCTGCACGGT 771
||||||||||||||| |||| |||| |||| ||||||||||||||| |||| ||||| ||
Sbjct 712 AACAAGACTTGTGGTAAAACCGATAGATGCAATGGTGGTTACTGGAGGATCTTGCACCGT 771
Query 772 GATAAGCTGATCAAGTCAAATTTCGGAAAGGTCATTGGTTTCAAGAAGGTATTTGAGTTC 831
|||||||||||||||||||| | ||| ||| |||||||||||||||||| ||| |||||
Sbjct 772 GATAAGCTGATCAAGTCAAAGTCCGGGAAGACCATTGGTTTCAAGAAGGTTTTTAAGTTC 831
Query 832 TATGAAACGGTGA-GACAAATATATCTTT-GTGATGGAGAAGAAGTGACGGTAACTTGGA 889
|||||||||| || | ||| ||| |||| |||||| |||||| |||| | |||||||||
Sbjct 832 TATGAAACGGAGAAGG-AAAGATA-CTTTTGTGATGAAGAAGATGTGAAGATAACTTGGA 889
Query 890 CTATACAAGAGTATAGGCTTAGCAAAAACGTGAAGCAGAATAAAGT-GTTGTGCGTTATC 948
||||| ||||||||||||||| | |||||||||||||||| | || ||||||||||
Sbjct 890 CTATAGAAGAGTATAGGCTTA--A----CGTGAAGCAGAATAAATTCGT-GTGCGTTATC 942
Query 949 AA-GTTGACTTATGA 962
|| ||| ||||||||
Sbjct 943 AAAGTTTACTTATGA 957
> Ahg925045 jgi|Araly1|925045|scaffold_200606.1
Length=982
Score = 1003 bits (543), Expect = 0.0
Identities = 821/950 (86%), Gaps = 40/950 (4%)
Strand=Plus/Plus
Query 17 CAGCTTATGATCTAATCAAA-CACGAACTGTTATACTCAGAAGACGAAGTAATAATCTCA 75
|||||||||||| ||||||| | |||||||||| || |||||||||||||||||||||||
Sbjct 31 CAGCTTATGATCGAATCAAAGC-CGAACTGTTAAACGCAGAAGACGAAGTAATAATCTCA 89
Query 76 CGTTATCTGAAGGGTATGGTCGTTAACGGAGATTCTTGGCCAGATCACTTCATCGAAGAC 135
|||||||||||| ||||| |||||||||||||||||||||| | | ||||||||||||||
Sbjct 90 CGTTATCTGAAGCGTATGATCGTTAACGGAGATTCTTGGCCTGCTAACTTCATCGAAGAC 149
Query 136 GCAAACGTGTTCACCAAGAATCCAGATAAGGTGTTCAATTCTGAGAGAC-CTAGATTCGT 194
||||||||||||| |||||||||| || || ||| ||||||| || | |||| |||||
Sbjct 150 GCAAACGTGTTCAACAAGAATCCATATGTGGAGTTTGATTCTGATAG-CACTAGCTTCGT 208
Query 195 GATCGTTAAACC-ACGAACAGAGGCTTGTGGTAAAACCGATGGATGTGATTCGGGTTGCT 253
|||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 209 GATCGTTAAACCTA-GAACAGAGGCTTGTGGTAAAACCGATGGATGTGAATCGGGTTGCT 267
Query 254 GGAGGATCATTGGTCGTGATAAACTGAT-AAAGTCGGAGGAGACTGGGAAGATTCTAGGG 312
|||||||||| |||||||||||||| || ||| ||| | | |||||||||||||||||||
Sbjct 268 GGAGGATCATCGGTCGTGATAAACTTATCAAA-TCGAAAGCGACTGGGAAGATTCTAGGG 326
Query 313 TTCAAGAAGATACTCAAGTTTTGCCTA-AAGAGGAAACCTATAGACTACAAGAGAAGTTG 371
||||||||||| |||||||| || | | |||| |||||||| ||| |||||||||||| |
Sbjct 327 TTCAAGAAGATTCTCAAGTTCTG-CAAGAAGACGAAACCTAGAGAATACAAGAGAAGTCG 385
Query 372 GGTAATGGAAGAGTATAGGCTTACCAATAACTTGAACTGGAAGCAAGATCATGTGATTTG 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 386 GGTAATGGAAGAGTATAGGCTTACCAATAACTTGAACTGGAAGCAAGATCATGTGATTTG 445
Query 432 CAAAATTCGGTTTATGTTTGAAGCTGAAATTAGTTTCTTGCTAAGCAAGCATTTCTACAC 491
||| ||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 446 CAAGATTCGGTTTCTGTTTGAAGCTGAGATTAGTTTCTTGCTAACCAAGCATTTCTACAC 505
Query 492 TACATCAGAATCGGTTCTT-GAAAATGAGCTGTTGCCATCTTATGGATAT-TATTTATCC 549
||||||| |||| |||| | || ||||||||||||| ||||||||| | |||| ||
Sbjct 506 TACATCAAAATCACCTCTTCGTAA-TGAGCTGTTGCCAGCTTATGGAT-TCTATT---CC 560
Query 550 AAT-ACACAAGAGGAGGATGAATTTTATC-TG-GACGCGATAATGACTTCGGAAGGAAAC 606
||| | ||||||| | |||||||||||| || || | ||||||| ||| |||||||||
Sbjct 561 AATGA-ACAAGAGAATGATGAATTTTATTGTGTGAAG--ATAATGAGTTCTGAAGGAAAC 617
Query 607 GAGTGGCCTAGCTACGTTACCAACAACGTGTACTGTCTGCATCCATTGGAGCTTGTGGAT 666
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 618 GATTGGCCTAGCTACGTTACCAACAACGTGTATTGTCTGCATCCATTGGAGCTTGTGGAT 677
Query 667 CTTCAAGATCG-GATGTTT-AATGATTACGGAACCTGCATCTTCGCTAACAAGACTTGTG 724
| ||||||| | || |||| || | || ||||| |||||| ||||||||||||||| |
Sbjct 678 CCTCAAGAT-GAGAAGTTTCAACGTTT-CGGAATCTGCATATTCGCTAACAAGACTAAAG 735
Query 725 GTGA-AACTGATAAATGCGATGGTGGTTACTGGAAGATCCTGCACGGTGATAAGCTGATC 783
| | || ||||||||||||||||||||||||||| || | | | ||||| || ||||
Sbjct 736 CT-ATAAGAGATAAATGCGATGGTGGTTACTGGAAGCTCTTACGCCATGATAGGCCGATC 794
Query 784 AAGTCAAATTTCGGAAAGGTCATTGGTTTCAAGAAGG-TATTTGAGTTCTATGAAACGGT 842
||| || | ||||| | |||||||| ||||| || | |||||||| | ||||||||
Sbjct 795 AAGGCAGAGTTCGGGAC---CATTGGTTACAAGA-GGCTTTTTGAGTTTTGTGAAACGGA 850
Query 843 GAGACAA-ATATAT-CTTTGTGATGGAGAAGAAGTGACGGTAACTTGGACTATACAAGAG 900
|| | || | |||| || || ||||| |||| |||| |||||||||||||||| |||||
Sbjct 851 GAAAGAAGA-ATATGCTC-GTAATGGAAAAGATGTGAAGGTAACTTGGACTATAGAAGAG 908
Query 901 TATAGGCTTAGCAAAAACGTGAAGCAGAATAAAGTG-TTGTGCGTTATCA 949
||||||||||||||||||||||||| ||||| || |||||||||||||
Sbjct 909 TATAGGCTTAGCAAAAACGTGAAGCGGAATAG-GTTCTTGTGCGTTATCA 957
> Ahg925028 jgi|Araly1|925028|scaffold_200589.1
Length=1042
Score = 743 bits (402), Expect = 0.0
Identities = 786/962 (82%), Gaps = 64/962 (7%)
Strand=Plus/Plus
Query 31 ATCAAACACGAACTG-TTATACTCAGAAGACGAAGTAATAATCTCACGTTATCTGAAGGG 89
|||||| |||||||| | | | |||||||||| ||||||||||||||||| |||||| |
Sbjct 54 ATCAAAGACGAACTGATCA-AAGCAGAAGACGATGTAATAATCTCACGTTACCTGAAGCG 112
Query 90 TATGGTCGTTAACGGAGATTCTTGGCCAGATCACTTCATCGAAGACGCAAACGTGTTCAC 149
|||| |||||||||||||||| ||||| ||||||||||||||||||| | |||||||||
Sbjct 113 TATGATCGTTAACGGAGATTCATGGCCTGATCACTTCATCGAAGACGTAGACGTGTTCAA 172
Query 150 CAAGAATCCAGATAAGGTGTTCAATTCTGAGAGAC-CTAGATTCGTGATCGTTAAACCAC 208
|||||||||| || ||| ||| ||||| ||| | |||||||| ||||||||||| |||
Sbjct 173 CAAGAATCCAAATGAGGAGTTTTATTCTCCGAG-CACTAGATTCCTGATCGTTAAAACAC 231
Query 209 GAACAGAGGCTTGTGGTAAAACCGATGGATGTGATTCGGGTTGCTGGAGGATCATTGGTC 268
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 232 GAACAGAGGCTTGTGGTAGAACCGATGGATGTGAATCGGGTTGCTGGAGGATCATTGGTC 291
Query 269 GTGATAAACTGATAAAGTCGGAGGAGACTGGGAAGATTCTAGGGTTCAAGAAGATACTCA 328
|||||||||||||||| ||| ||||||||||||| |||||||||||||||||||| ||||
Sbjct 292 GTGATAAACTGATAAAATCGAAGGAGACTGGGAATATTCTAGGGTTCAAGAAGATTCTCA 351
Query 329 AGTTTTGCCTAAAGAGGAAACCTATAGACTACAAGAGAAGTTGGGTAATGGAAGAGTATA 388
|||| ||| |||||| |||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 352 AGTTCTGCTTAAAGACGAAACCTAGAGAATACAAGAGAAGTTGGGTAATGGAAGAGTATA 411
Query 389 GGCTTACCAATAACTTGAACTGGAAGCAAGATCATGTGATTTGCAAAATTCGGTTTATGT 448
|| |||||||||||||||||| ||||||||||||||| |||||||| ||||||||| |||
Sbjct 412 GGGTTACCAATAACTTGAACTCGAAGCAAGATCATGTCATTTGCAAGATTCGGTTTCTGT 471
Query 449 TTGAAGCTGAAATTAGTTTCTTGCTAAGC-AAGCATTT--C-TA-CACTACA-TCAGA-- 500
| |||||||| || ||||||||||| || |||||||| | || | || || | ||
Sbjct 472 TCGAAGCTGAGATCAGTTTCTTGCTT-GCCAAGCATTTATCGTATCTCTCCACT-AGGTC 529
Query 501 ATCG-GTTCTTGAAAATGAGCTGTTGCCATCTTATGGA-TATTATTTATCCAATACACAA 558
| || || || | |||| | |||||||| |||||||| | | ||||| | ||||| ||
Sbjct 530 ACCGCGTCCT-GCAAATCAATTGTTGCCAGCTTATGGAGTGTG-TTTATTCGATACAGAA 587
Query 559 GAGGAGGATGAATTTTATCTGGACGC-GATAAT-GACTT-CGGAAGGAAACGAGT-GGCC 614
| ||||| || |||||||||| | | |||||| || || || | |||||| | | ||||
Sbjct 588 GCGGAGGGTGCATTTTATCTGCA-GAAGATAATCGA-TTACG-ATGGAAAC-ACTTGGCC 643
Query 615 TAGCTACGTTACCAACAACGTGTACTGTCTGCATCCATTGGA-GCTTGTGGATCTTCAAG 673
|||||||||||| ||||| |||||| || ||||||||| | | ||||||||||| |||||
Sbjct 644 TAGCTACGTTACGAACAATGTGTACCGTTTGCATCCATCG-ACGCTTGTGGATCCTCAAG 702
Query 674 ATCGG-ATGTTTAATGA-TTACGGAACCTGCATCTTCGCTAAC---A-AGA--CTTGTGG 725
|| | | |||||| || || |||||| || ||||| |||||| | | | |||||||
Sbjct 703 AT-GACAAGTTTAAAGAGTT-CGGAACATGTATCTTTGCTAACCGGACAAAGGCTTGTGG 760
Query 726 TGAAACTGATAAATGCGATGGTGGT--T-ACTGGAAGATCCT-GCACGGTGATA-AGCTG 780
| |||| ||| |||||||||||||| | |||||| |||| | | | | | ||| || |
Sbjct 761 TAAAACCGATGAATGCGATGGTGGTGGTTACTGGACGATCGTAGAA-GTTCATAGAGGT- 818
Query 781 ATCAAGTCAAATTTC-GGAAAGGT-CATTGGTTTCAAGAAGG-TATTTGAGTTCTATGAA 837
||||||||||| | || || | | |||||| || | ||| | ||| |||| | |||
Sbjct 819 ATCAAGTCAAAAA-CAGGGGAGATTC-TTGGTTACA-GTAGGGTTTTTCAGTTATCGGAA 875
Query 838 ACGGTGAG-A-CAAATATA-TCTTTGTGATGGAGAAGAAGTGACGGTAAC---TTGGACT 891
| |||| | | |||| | | ||||||| |||||||| |||| | ||| ||||| |
Sbjct 876 AA--TGAGGAACCAATA-ACTGTTTGTGAAGGAGAAGATGTGAATGAAACAGCTTGGATT 932
Query 892 ATACAAGAGTATAGGCTT-AGCAAAAACGT-GAAGCAGAATAAAGTGTTGTGCGTTATCA 949
||| |||||||||||||| | | |||| | |||| || |||||||||||||||||||||
Sbjct 933 ATAGAAGAGTATAGGCTTGA-CGAAAA-GAAGAAGAAGGATAAAGTGTTGTGCGTTATCA 990
Query 950 AG 951
||
Sbjct 991 AG 992
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35988033648
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5