BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G60320.1

Length=516
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg907378 jgi|Araly1|907378|Al_scaffold_0002_459                     780    0.0  


> Ahg907378 jgi|Araly1|907378|Al_scaffold_0002_459
Length=621

 Score =  780 bits (422),  Expect = 0.0
 Identities = 477/504 (95%), Gaps = 2/504 (0%)
 Strand=Plus/Plus

Query  1    ATGACAAAGAGTGTTAAGAAGATCCCGATGGTGGCTATCTCTCGATTCATGCAGCCTCCA  60
            ||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||
Sbjct  1    ATGACAAAGAGTGTTAAGAAGATCCCGATGGTGACCATCTCTCGCTTCATGCAGCCTCCA  60

Query  61   CA-GTTCCAGGACCAGGTGTTTATCAACTTCCGAGGAGAGGAAATTCGCTATAGCTTCCT  119
             | ||| |||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct  61   -AGGTTTCAGGACCAAGTTTTTATCAACTTCCGAGGAGAGGAAATTCGCTATAGCTTCCT  119

Query  120  CAGCCACCTCGCTGCCGCTTTTGAACTACACGGAATAAACTTCTTCATTGACAAAGATGA  179
            ||||||||| | |||||||||| |||||||||||||||| ||||||||||||||||| ||
Sbjct  120  CAGCCACCTTGTTGCCGCTTTTAAACTACACGGAATAAATTTCTTCATTGACAAAGACGA  179

Query  180  ACAGAAGGGAAAAGACCTTAAACACCTTTTCAAAAGGATCAAGCAGTCGCAGATTGCATT  239
            ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
Sbjct  180  ACAGAAGGGAAAAGACCTTAAGCACCTTTTCAAAAGGATCAAGGAGTCGCAGATTGCACT  239

Query  240  AGCAATCTTTTCCGAAAGATATGCGGAGTCCCCATGGTGCTTGAACGAACTGGCAAAGAT  299
            ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct  240  AGCAATCTTTTCCGAAAGATATGCGCAGTCCCGATGGTGCTTGAACGAACTGGCAAAGAT  299

Query  300  GAAGAAACTTGCAAAGAAGGGCAAATTAAATGTGGTTCCTATTTTCTACAAGGTGGAGGT  359
            |||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct  300  GAAGAAACTTGCAAGGAAGGGCAAATTAAATGTGGTTCCAATTTTCTACAAGGTGAAGGT  359

Query  360  AAATGATGTGAGACACCAAGAGGGAAAATTTGGTAGTAACTTTTGGAAGTTGGCAAAGAT  419
            ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| 
Sbjct  360  AAATGATGTGAGACATCAAGAGGGAAAATTTGGTAGCAACTTTTGGAAGTTGGCAAAGAC  419

Query  420  TTCTAGTGGTGACGAGATCAAGAAGTGGAAGGAAGCTTTGGAGTTTTTCTCTAATAAGAT  479
            |||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||
Sbjct  420  TTCTAGTGGTGAGGAAATCAAGAAGTGGAAGGAAGCTTTGGAGTTTTTCTCTAACAAGAT  479

Query  480  GGGCTTGACGTTATGTGGCAAGAG  503
            ||||||||||||||||||||||||
Sbjct  480  GGGCTTGACGTTATGTGGCAAGAG  503



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18772549788


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5