BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G60350.1
Length=963
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475292 jgi|Araly1|475292|fgenesh2_kg.2__422__AT1G60350.1 1301 0.0
Ahg338342 jgi|Araly1|338342|fgenesh1_pg.C_scaffold_2000441 1081 0.0
Ahg925045 jgi|Araly1|925045|scaffold_200606.1 1007 0.0
Ahg925028 jgi|Araly1|925028|scaffold_200589.1 721 0.0
> Ahg475292 jgi|Araly1|475292|fgenesh2_kg.2__422__AT1G60350.1
Length=957
Score = 1301 bits (704), Expect = 0.0
Identities = 880/964 (91%), Gaps = 15/964 (2%)
Strand=Plus/Plus
Query 1 ATGGAGGAAGATGCAGCTTTTGATCTACTCAAAGCCGAACTCTTAAACGCAGAAGACGAT 60
||||| || || ||||||||||||||| ||||||||||||| ||||| |||||||||||
Sbjct 1 ATGGAAGACGACGCAGCTTTTGATCTAATCAAAGCCGAACTGTTAAATGCAGAAGACGAG 60
Query 61 GCAATAATCTCACGTTATCTGAAGCGTATGGTCGTCAACGGAGACTCATGGCCTGATCAC 120
| |||||||| ||||||||||||||||||| |||| |||||||| || ||||||||||||
Sbjct 61 GTAATAATCTTACGTTATCTGAAGCGTATGATCGTTAACGGAGATTCTTGGCCTGATCAC 120
Query 121 TTCATCGAAGACGCAGACGTGTTCAACAAGAATCCAAATGTGGAGTTCGATGCTGAGAGC 180
|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 121 TTCATCAAAGACGCAGACGTGTTCAACAAGAATCCAAATGTGGTGTTCGATGCTGAGAGC 180
Query 181 CCTAGCTTCGTGATAGTTAAACCTCGAACAGAGGCTTGTGGTAAAACCGATGGATGTGAA 240
|||||||||||||| |||||||| ||||||||| ||||||| ||||||||||||||||
Sbjct 181 CCTAGCTTCGTGATCGTTAAACCACGAACAGAGATTTGTGGTGGAACCGATGGATGTGAA 240
Query 241 ACTGGTTGCTGGAGGATCATGGGTCGTGATAAACCGATAAAATCGACGGAGACTGTGAAG 300
|||||||||||||||||||||||||||| |||| ||||||||||| | |||||| ||||
Sbjct 241 TCTGGTTGCTGGAGGATCATGGGTCGTGAGAAACTGATAAAATCGAAGAAGACTGGGAAG 300
Query 301 ATTCAAGGGTTCAAGAAGATTCTCAAGTTCTGCCTAAAGAGGAAACCTAGAGGATACAAG 360
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 301 ATTCTAGGGTTCAAGAAGATTCTCAAGTTCTGCCTAAAGAGGAAACCTAGAGAATACAAG 360
Query 361 AGAAGTTGGGTAATGGAAGAGTATAGGCTTACCAATAACTTGAACTGGAAGCAAGATCAT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGAAGTTGGGTAATGGAAGAGTATAGGCTTACCAATAACTTGAACTGGAAGCAAGATCAT 420
Query 421 GTGATTTGCAAGATTCGGTTTATGTTTGAAGCTGAAATCAGTTTCTTGCTAGCCAAGCAT 480
|||||||| |||||||| ||| |||||||| | ||||| |||||| ||||||||||||||
Sbjct 421 GTGATTTGTAAGATTCGATTTTTGTTTGAATCCGAAATTAGTTTCGTGCTAGCCAAGCAT 480
Query 481 TTCTACACTACATCAGAATCACTTCCTCGAAATGAGCTGTTGCCAGCTTACGGATTCCTT 540
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 481 TTCTACACTACATCAGAATCACTTCCTCGTAATGAGCTGTTGCCAGCTTATGGATTCCTT 540
Query 541 TCATCAGATAAGCAATTGGAGGATGTATCTTATCCGGTGACGATAATGACTTCTGAAGGA 600
||||||||||| ||| | |||||| ||||||||| ||||||||| |||||||||||||||
Sbjct 541 TCATCAGATAAACAAGTAGAGGATATATCTTATCTGGTGACGATCATGACTTCTGAAGGA 600
Query 601 --AA-CGATTGGCCTAGCTACGTTACCAACAATGTGTATTGTCTGCATCCATTGGAGCTC 657
|| ||||||||||||||||||||||||| | |||||||| ||||||||| |||||||
Sbjct 601 TTAAACGATTGGCCTAGCTACGTTACCAACGACGTGTATTGCCTGCATCCACTGGAGCTT 660
Query 658 GTTGATCTTCAAGATCGGATGTTTAATGATT-ACGGAACC-TGCATCTTCGCTAACAAGA 715
| ||||||||||||||||||||| || ||| |||||||| | |||||| |||||||||
Sbjct 661 GCGGATCTTCAAGATCGGATGTTTCAT-ATTTACGGAACCCTT-ATCTTCTCTAACAAGA 718
Query 716 CTTGTGGTAAAACCGATAGATGCATTAATGGTGGTTACTGGAAAATTTTGCACCGTGATA 775
|||||||||||||||||||||||| | |||||||||||||| || |||||||||||||
Sbjct 719 CTTGTGGTAAAACCGATAGATGCA--A-TGGTGGTTACTGGAGGATCTTGCACCGTGATA 775
Query 776 GGCTGATCAAGTCAAAGTCCGGGATAGTT-ATTGGTTTCAAGAAGGTGTTTAAGTT-TCA 833
||||||||||||||||||||||| || ||||||||||||||||| |||||||| | |
Sbjct 776 AGCTGATCAAGTCAAAGTCCGGGA-AGACCATTGGTTTCAAGAAGGTTTTTAAGTTCT-A 833
Query 834 TGAAACGGAGAAAGAAAGATACTTCTGTGGTGGAGAAGATGTGAAGGTAACTTGGACTCT 893
|||||||||||| ||||||||||| |||| || ||||||||||||| ||||||||||| |
Sbjct 834 TGAAACGGAGAAGGAAAGATACTTTTGTGATGAAGAAGATGTGAAGATAACTTGGACTAT 893
Query 894 AGAAGAGTATAGGCTTAGCGTGAAGCAGAATAAATTCTTGTGCGTTATCAA-GTTTACTT 952
||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 894 AGAAGAGTATAGGCTTAACGTGAAGCAGAATAAATTCGTGTGCGTTATCAAAGTTTACTT 953
Query 953 ATGA 956
||||
Sbjct 954 ATGA 957
> Ahg338342 jgi|Araly1|338342|fgenesh1_pg.C_scaffold_2000441
Length=1896
Score = 1081 bits (585), Expect = 0.0
Identities = 808/913 (88%), Gaps = 26/913 (3%)
Strand=Plus/Plus
Query 14 CAGCTTTTGATCTACTCAAAGCCGAACTCTTAAACGCAGAAGACGATGCAATAATCTCAC 73
|||||| ||||| | ||||||||||||| ||||||||||||||||| | |||||||||||
Sbjct 11 CAGCTTATGATCGAATCAAAGCCGAACTGTTAAACGCAGAAGACGAAGTAATAATCTCAC 70
Query 74 GTTATCTGAAGCGTATGGTCGTCAACGGAGACTCATGGCCTGATCACTTCATCGAAGACG 133
||||||||||||||||| |||| |||||||| || |||||| |||||||||| ||| |||
Sbjct 71 GTTATCTGAAGCGTATGATCGTTAACGGAGATTCTTGGCCTAATCACTTCATTGAATACG 130
Query 134 CAGACGTGTTCAACAAGAATCCAAATGTGGA-GTTCGA-TGCTGAGAGCCCTAGCTTCGT 191
||||||||||||||||| ||||||||| || ||| | | ||||||| ||||| |||||
Sbjct 131 CAGACGTGTTCAACAAGGATCCAAATG-AGATATTC-AGTTCTGAGAGACCTAGATTCGT 188
Query 192 GATAGTTAAACCTCGAACAGAGG-CTTGTGGTAAAACCGATGGATGTGA--AA-CTGGTT 247
||| |||||||||||||||| || |||||||||||||||||||||||| || ||||||
Sbjct 189 GATCGTTAAACCTCGAACAG-GGAATTGTGGTAAAACCGATGGATGTGATGAATCTGGTT 247
Query 248 GCTGGAGGATCATGGGTCGTGATAAACCGATAAAATC-GACGGAGACTGTGAAGATTCAA 306
||||||||||||||| ||||||||||| |||||| || || |||||||| |||||||| |
Sbjct 248 GCTGGAGGATCATGGCTCGTGATAAACTGATAAAGTCGGA-GGAGACTGGGAAGATTCTA 306
Query 307 GGGTTCAAGAAGATTCTCAAGTTCTGCCTAAAGAGGAAACCTAGAGGATACAAGAGAAGT 366
|||||||||||||| |||||||||||||||||| |||||||||||| ||||||||| |||
Sbjct 307 GGGTTCAAGAAGATCCTCAAGTTCTGCCTAAAGTGGAAACCTAGAGAATACAAGAGGAGT 366
Query 367 TGGGTAATGGAAGAGTATAGGCTTACC-AATAACTTGAACTGGAAGCAAGATCATGTGAT 425
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 367 TGGGTAATGGAAGAGTATAGGCTT-CCTAATAACTTGAACTGGAAGCAAGATCATGTGAT 425
Query 426 TTGCAAGATTCGGTTTATGTTTGAAGCTGAAATCAGTTTCTTGCTAGCCAAGCATTTCTA 485
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 426 TTGCAAGATTCGGTTTCTGTTTGAAGCTGAAATTAGTTTCTTGCTAGCCAAGCATTTCTA 485
Query 486 CACTACATCAGAATCACTTCCTCGAAATGAGCTGTTGCCAGCTTACGGATTCCT-TTCAT 544
|||||||||||||||||||||||| |||||||||||||||||||| ||||| || | ||
Sbjct 486 CACTACATCAGAATCACTTCCTCGTAATGAGCTGTTGCCAGCTTATGGATT-CTATCCA- 543
Query 545 CA-GAT-AAGCAATTGGAGGATGTATCTTATCCGGTGACGATAATGACTTCTGAAGGAAA 602
|| | || ||| ||| |||| ||||||| | |||||||||||||||||||||||||
Sbjct 544 CATTCTGAA-CAAGAGGATGATGAATCTTATTTGTTGACGATAATGACTTCTGAAGGAAA 602
Query 603 CGATTGGCCTAGCTACGTTACCAACAATGTGTATTGTCTGCATCCATTGGAGCTCGTTGA 662
||||||||||||||||||||||||||| ||||||||||||||||| || ||||| || ||
Sbjct 603 CGATTGGCCTAGCTACGTTACCAACAACGTGTATTGTCTGCATCCTTTCGAGCTTGTGGA 662
Query 663 TCTTCAAGATCGGATGTTTAATGATTACGGAACCTGCATCTTCGCTAACAAGACTTGTGG 722
||||| ||||||||||||| |||||||||||| ||||||| ||||||||||||| ||||
Sbjct 663 TCTTCGAGATCGGATGTTTTGTGATTACGGAACATGCATCTACGCTAACAAGACTGGTGG 722
Query 723 TAAAACCGATAGATGCATTAATGGTGGTTACTGGAAAATTTTGCACCGTGATAGGCTGAT 782
| |||| |||| || || ||||||||||||||||| || ||||||||||||||| |||
Sbjct 723 TGAAACGGATATAT--AT-AATGGTGGTTACTGGAAGATCCTGCACCGTGATAGGCCGAT 779
Query 783 CAAGTCAAAGTCCGGGATAGTT-ATTGGTTTCAAGAAGGTGTTTAAGTTTCATGAAACGG 841
||||||||||||||||| || ||||||||||||||||| ||| ||||| ||||| |||
Sbjct 780 CAAGTCAAAGTCCGGGA-AGACCATTGGTTTCAAGAAGGTTTTTCAGTTTTATGAACCGG 838
Query 842 AGAAAGAAAGATACTTCT-GTGGTGGAGAAGATGTGAAGGTAACTTGGACTCTAGAAGAG 900
||| ||||||| | || | || |||| |||| |||||| || |||||| | ||||||||
Sbjct 839 AGAGAGAAAGA-ATTTTTTGTAATGGACAAGAAGTGAAGATAGCTTGGATTATAGAAGAG 897
Query 901 TATAGGCTTAGCG 913
|||||||||||||
Sbjct 898 TATAGGCTTAGCG 910
Score = 981 bits (531), Expect = 0.0
Identities = 835/976 (86%), Gaps = 43/976 (4%)
Strand=Plus/Plus
Query 1 ATGGAGGAA-GATGCAGCTTTTGATCTACTCAAAGC-CGAACTCTTAAACGCAGAAGACG 58
||||| ||| || ||||||| ||||||| ||||| | |||||| ||||||||||||||||
Sbjct 949 ATGGA-GAACGACGCAGCTTATGATCTAATCAAA-CACGAACTGTTAAACGCAGAAGACG 1006
Query 59 ATGCAATAATCTCACGTTATCTGAAGCGTATGGTCGTCAACGGAGACTCATGGCCTGATC 118
| | |||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||
Sbjct 1007 AAGTAATAATCTCACGTTATCTGAAGGGTATGATCGTCAACGGAGATTCATGGCCTGATC 1066
Query 119 ACTTCATCGAAGACGCAGACGTGTTCAACAAGAATCCAAATGTGGAGTTCGATGCTGAGA 178
||||||||| ||||||| |||| ||||||||||||||||||| || |||| || ||||||
Sbjct 1067 ACTTCATCGTAGACGCAAACGTATTCAACAAGAATCCAAATGAGGTGTTCAATTCTGAGA 1126
Query 179 GCCCTAGCTTCGTGATAGTTAAACCTCGAACAGAGGCTTGTGGTAAAACCGATGGATGTG 238
| ||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1127 GACCTAGATTCGTGATCGTTAAACCACGAACAGAGGCTTGTGGTAAAACCGATGGATGTG 1186
Query 239 AAACTGGTTGCTGGAGGATCATGGGTCGTGATAAACCGATAAAATC-GACGGAGACTGTG 297
|| ||||||||||||||||||||||||||||||||| |||||| || || |||||||| |
Sbjct 1187 AATCTGGTTGCTGGAGGATCATGGGTCGTGATAAACTGATAAAGTCGGA-GGAGACTGGG 1245
Query 298 AAGATTCAAGGGTTCAAGAAGATTCTCAAGTTCTGCCTA-AAGAGGAAACCTAGAGGATA 356
||||||| ||||||||||||||||||||||||||| | | |||| |||||| |||| |||
Sbjct 1246 AAGATTCTAGGGTTCAAGAAGATTCTCAAGTTCTG-CAAGAAGACGAAACCAAGAGAATA 1304
Query 357 CAAGAGAAGTTGGGTAATGGAAGAGTATAGGCTTACCAATAACTTGAACTGGAAGCAAGA 416
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1305 CAAGAGAAGTTGGGTAATGGAAGAGTATAGGCTTACCAAGAACTTGAACTGGAAGCAAGA 1364
Query 417 TCATGTGATTTGCAAGATTCGGTTTATGTTTGAAGCTGAAATCAGTTTCTTGCTAGCCAA 476
|||||| ||||||||||||||||| |||||||||||||| || |||||||||||| ||
Sbjct 1365 TCATGTCATTTGCAAGATTCGGTTAATGTTTGAAGCTGAGATTAGTTTCTTGCTAAAGAA 1424
Query 477 GCATTTCTACACTACATCAGAATCACTTCCTCGAAATGAGCTGTTGCCAGCTTACGGATT 536
|||||||||||||||||||||||| ||| | |||||| | |||||||| |||| ||||
Sbjct 1425 GCATTTCTACACTACATCAGAATCGGTTCTTGGAAATGGGTTGTTGCCATCTTATGGATA 1484
Query 537 CCTTTCATCAGA-TAAGCAATTGGAGGATGTATCTTATCCGGTGACGATAATGACTTCTG 595
|| ||||| | || |||| |||||||| ||||||| || ||||||| |||||| ||
Sbjct 1485 --TT-CATCA-ACTACGCAAGAGGAGGATGAATCTTATATGGAGACGATAGTGACTTGTG 1540
Query 596 AAGGAAACGATTGGCCTAGCTACGTTACCAACAATGTGTATTGTCTGCATCCATTGGAGC 655
|||||||| ||||||||||||||||||||||| | ||||| |||||||||||| |||| |
Sbjct 1541 AAGGAAACTATTGGCCTAGCTACGTTACCAACGACGTGTACTGTCTGCATCCAATGGACC 1600
Query 656 TCGTTGATCTTCAAGATCGGATGTTTAATGATTACGGAACCTGCATCTTCGCTAACAAGA 715
| || |||| |||||||| ||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1601 TTGTGGATCCTCAAGATCCGATGTTTCATGATTACGGAACCTGCATCTTCGCTAACGGGA 1660
Query 716 CTTGTGGTAAAACCGATAGATGCATTAATGGTGGTTACTGGAAAATTTTGCACCGTGATA 775
|||||||| |||| |||| |||| | ||||||||||||||| || |||||| |||||
Sbjct 1661 CTTGTGGTGAAACTGATAAATGCG--A-TGGTGGTTACTGGAAGATCCTGCACCATGATA 1717
Query 776 GGCTGATCAAGTCAAAGTCCGGGATAG-TTATTGGTTTCAAGAAGGTGTTTAAGTTTCAT 834
|||||||| | | |||| || ||| ||||||||||||||| ||||||||| ||
Sbjct 1718 AGCTGATCA---C-----C-GGGA-AGGTTAATGGTTTCAAGAAGGTTTTTAAGTTTTAT 1767
Query 835 GAAACGGAGAAAGAAAGATACTTCTGTGGT-GGAGAAGATGTGAAGGTAACTTGGACTCT 893
||||| ||| || | | || || || || ||| | ||||| |||||||||||| |
Sbjct 1768 GAAACAC-GAA-GATA--TG-TT-TG-GGAAGGTGAATACGTGAACGTAACTTGGACTAT 1820
Query 894 AGAAGAGTATAGGCTTAGCGTGAAGCAGAA------TAAATTCTTGTGCGTTATCAAGTT 947
|||||||||||||||||||| ||| |||| |||| | | ||||||||||||||
Sbjct 1821 AGAAGAGTATAGGCTTAGCGAAAAGGAGAAGGAGGATAAAGTGATATGCGTTATCAAGTT 1880
Query 948 TACT-TATGATAACTA 962
||| | |||||||||
Sbjct 1881 TACCCT-TGATAACTA 1895
> Ahg925045 jgi|Araly1|925045|scaffold_200606.1
Length=982
Score = 1007 bits (545), Expect = 0.0
Identities = 830/964 (86%), Gaps = 33/964 (3%)
Strand=Plus/Plus
Query 14 CAGCTTTTGATCTACTCAAAGCCGAACTCTTAAACGCAGAAGACGATGCAATAATCTCAC 73
|||||| ||||| | ||||||||||||| ||||||||||||||||| | |||||||||||
Sbjct 31 CAGCTTATGATCGAATCAAAGCCGAACTGTTAAACGCAGAAGACGAAGTAATAATCTCAC 90
Query 74 GTTATCTGAAGCGTATGGTCGTCAACGGAGACTCATGGCCTGATCACTTCATCGAAGACG 133
||||||||||||||||| |||| |||||||| || ||||||| | |||||||||||||||
Sbjct 91 GTTATCTGAAGCGTATGATCGTTAACGGAGATTCTTGGCCTGCTAACTTCATCGAAGACG 150
Query 134 CAGACGTGTTCAACAAGAATCCAAATGTGGAGTTCGATGCTGAGAGCCCTAGCTTCGTGA 193
|| |||||||||||||||||||| |||||||||| ||| |||| ||| ||||||||||||
Sbjct 151 CAAACGTGTTCAACAAGAATCCATATGTGGAGTTTGATTCTGATAGCACTAGCTTCGTGA 210
Query 194 TAGTTAAACCTCGAACAGAGGCTTGTGGTAAAACCGATGGATGTGAAACTGGTTGCTGGA 253
| ||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 211 TCGTTAAACCTAGAACAGAGGCTTGTGGTAAAACCGATGGATGTGAATCGGGTTGCTGGA 270
Query 254 GGATCATGGGTCGTGATAAACCGATAAAATCGACGGAGACTGTGAAGATTCAAGGGTTCA 313
||||||| ||||||||||||| || ||||||| | ||||| |||||||| ||||||||
Sbjct 271 GGATCATCGGTCGTGATAAACTTATCAAATCGAAAGCGACTGGGAAGATTCTAGGGTTCA 330
Query 314 AGAAGATTCTCAAGTTCTGCCTA-AAGAGGAAACCTAGAGGATACAAGAGAAGTTGGGTA 372
||||||||||||||||||| | | |||| ||||||||||| ||||||||||||| |||||
Sbjct 331 AGAAGATTCTCAAGTTCTG-CAAGAAGACGAAACCTAGAGAATACAAGAGAAGTCGGGTA 389
Query 373 ATGGAAGAGTATAGGCTTACCAATAACTTGAACTGGAAGCAAGATCATGTGATTTGCAAG 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 390 ATGGAAGAGTATAGGCTTACCAATAACTTGAACTGGAAGCAAGATCATGTGATTTGCAAG 449
Query 433 ATTCGGTTTATGTTTGAAGCTGAAATCAGTTTCTTGCTAGCCAAGCATTTCTACACTACA 492
||||||||| ||||||||||||| || |||||||||||| ||||||||||||||||||||
Sbjct 450 ATTCGGTTTCTGTTTGAAGCTGAGATTAGTTTCTTGCTAACCAAGCATTTCTACACTACA 509
Query 493 TCAGAATCACTTCCTCGAAATGAGCTGTTGCCAGCTTACGGATTCCT-TTCATCAGAT-A 550
||| |||||| || ||| |||||||||||||||||||| |||||| | ||| || || |
Sbjct 510 TCAAAATCACCTCTTCGTAATGAGCTGTTGCCAGCTTATGGATTC-TATTC--CA-ATGA 565
Query 551 AGCAATTGGAGGATGTATCTTATCCG-GTGACGATAATGACTTCTGAAGGAAACGATTGG 609
| ||| | | |||| || |||| | |||| |||||||| |||||||||||||||||||
Sbjct 566 A-CAAGAGAATGATGAATTTTATT-GTGTGAAGATAATGAGTTCTGAAGGAAACGATTGG 623
Query 610 CCTAGCTACGTTACCAACAATGTGTATTGTCTGCATCCATTGGAGCTCGTTGATCTTCAA 669
|||||||||||||||||||| |||||||||||||||||||||||||| || |||| ||||
Sbjct 624 CCTAGCTACGTTACCAACAACGTGTATTGTCTGCATCCATTGGAGCTTGTGGATCCTCAA 683
Query 670 GATCG-GATGTTT-AATGATTACGGAACCTGCATCTTCGCTAACAAGACTTGTGGTAAAA 727
||| | || |||| || | || ||||| |||||| ||||||||||||||| | || ||
Sbjct 684 GAT-GAGAAGTTTCAACGTTT-CGGAATCTGCATATTCGCTAACAAGACTAAAGCTATAA 741
Query 728 CCGATAGATGCATTAATGGTGGTTACTGGAAAATTTTGCACCGTGATAGGCTGATCAAGT 787
|||| |||| | ||||||||||||||| | || | || |||||||| |||||||
Sbjct 742 GAGATAAATGCG--A-TGGTGGTTACTGGAAGCTCTTACGCCATGATAGGCCGATCAAGG 798
Query 788 CAAAGTCCGGGATAGTTATTGGTTTCAAGAAGG-TGTTTAAGTTTCATGAAACGGAGAAA 846
|| ||| ||||| ||||||| ||||| || | ||| ||||| |||||||||||||
Sbjct 799 CAGAGTTCGGGACC---ATTGGTTACAAGA-GGCTTTTTGAGTTTTGTGAAACGGAGAAA 854
Query 847 GAAAGA-TACTTCT-GTGGTGGAGAAGATGTGAAGGTAACTTGGACTCTAGAAGAGTATA 904
||| || || | || || |||| ||||||||||||||||||||||| ||||||||||||
Sbjct 855 GAA-GAATA-TGCTCGTAATGGAAAAGATGTGAAGGTAACTTGGACTATAGAAGAGTATA 912
Query 905 GGCTTAGC------GTGAAGCAGAATAAATTCTTGTGCGTTATCAAGTTTACTTATGATA 958
|||||||| ||||||| ||||| |||||||||||||||| || || ||||||
Sbjct 913 GGCTTAGCAAAAACGTGAAGCGGAATAGGTTCTTGTGCGTTATCAGGTAAACCGATGATA 972
Query 959 ACTA 962
||||
Sbjct 973 ACTA 976
> Ahg925028 jgi|Araly1|925028|scaffold_200589.1
Length=1042
Score = 721 bits (390), Expect = 0.0
Identities = 783/962 (81%), Gaps = 69/962 (7%)
Strand=Plus/Plus
Query 29 TCAAAGCCGAACT-CTTAAACGCAGAAGACGATGCAATAATCTCACGTTATCTGAAGCGT 87
|||||| |||||| | ||| ||||||||||||| ||||||||||||||| |||||||||
Sbjct 55 TCAAAGACGAACTGATCAAA-GCAGAAGACGATGTAATAATCTCACGTTACCTGAAGCGT 113
Query 88 ATGGTCGTCAACGGAGACTCATGGCCTGATCACTTCATCGAAGACGCAGACGTGTTCAAC 147
||| |||| |||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 114 ATGATCGTTAACGGAGATTCATGGCCTGATCACTTCATCGAAGACGTAGACGTGTTCAAC 173
Query 148 AAGAATCCAAATGTGGAGTTCGATGCTGAGAGCCCTAGCTTCGTGATAGTTAAACCTCGA 207
||||||||||||| |||||| || || |||| |||| ||| |||| |||||| | |||
Sbjct 174 AAGAATCCAAATGAGGAGTTTTATTCTCCGAGCACTAGATTCCTGATCGTTAAAACACGA 233
Query 208 ACAGAGGCTTGTGGTAAAACCGATGGATGTGAAACTGGTTGCTGGAGGATCATGGGTCGT 267
|||||||||||||||| |||||||||||||||| | ||||||||||||||||| ||||||
Sbjct 234 ACAGAGGCTTGTGGTAGAACCGATGGATGTGAATCGGGTTGCTGGAGGATCATTGGTCGT 293
Query 268 GATAAACCGATAAAATCGACGGAGACTGTGAAGATTCAAGGGTTCAAGAAGATTCTCAAG 327
||||||| ||||||||||| |||||||| ||| |||| ||||||||||||||||||||||
Sbjct 294 GATAAACTGATAAAATCGAAGGAGACTGGGAATATTCTAGGGTTCAAGAAGATTCTCAAG 353
Query 328 TTCTGCCTAAAGAGGAAACCTAGAGGATACAAGAGAAGTTGGGTAATGGAAGAGTATAGG 387
|||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 354 TTCTGCTTAAAGACGAAACCTAGAGAATACAAGAGAAGTTGGGTAATGGAAGAGTATAGG 413
Query 388 CTTACCAATAACTTGAACTGGAAGCAAGATCATGTGATTTGCAAGATTCGGTTTATGTTT 447
|||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||
Sbjct 414 GTTACCAATAACTTGAACTCGAAGCAAGATCATGTCATTTGCAAGATTCGGTTTCTGTTC 473
Query 448 GAAGCTGAAATCAGTTTCTTGCTAGCCAAGCATTT--C-TA-CACTACA-TCAGAATCAC 502
|||||||| |||||||||||||| ||||||||||| | || | || || | || ||||
Sbjct 474 GAAGCTGAGATCAGTTTCTTGCTTGCCAAGCATTTATCGTATCTCTCCACT-AGG-TCAC 531
Query 503 T---TCCT-CGAAATGAGCTGTTGCCAGCTTACGGA-T-TCCTTTCAT-CAGATA-AGCA 554
|||| | |||| | ||||||||||||| ||| | | ||| || | |||| || |
Sbjct 532 CGCGTCCTGC-AAATCAATTGTTGCCAGCTTATGGAGTGTG-TTT-ATTC-GATACAG-A 586
Query 555 ATTGGAGGATGTATCTTATCCGGTGACGATAAT-GACTT-CTGAAGGAAACGA-TTGGCC 611
| ||||| || || ||||| | || |||||| || || | || |||||| | ||||||
Sbjct 587 AGCGGAGGGTGCATTTTATCTGCAGAAGATAATCGA-TTAC-GATGGAAAC-ACTTGGCC 643
Query 612 TAGCTACGTTACCAACAATGTGTATTGTCTGCATCCATTGGA-GCTCGTTGATCTTCAAG 670
|||||||||||| ||||||||||| || ||||||||| | | ||| || |||| |||||
Sbjct 644 TAGCTACGTTACGAACAATGTGTACCGTTTGCATCCATCG-ACGCTTGTGGATCCTCAAG 702
Query 671 ATCGG-ATGTTTAATGA-TTACGGAACCTGCATCTTCGCTAAC---A-AGA--CTTGTGG 722
|| | | |||||| || || |||||| || ||||| |||||| | | | |||||||
Sbjct 703 AT-GACAAGTTTAAAGAGTT-CGGAACATGTATCTTTGCTAACCGGACAAAGGCTTGTGG 760
Query 723 TAAAACCGATAGA-TGC-ATTAATGGTGGTTACTGGAAAATTTT-GCACCGTG-ATAG-G 777
|||||||||| || ||| || |||||||||||||| || | | | || |||| |
Sbjct 761 TAAAACCGAT-GAATGCGATGG-TGGTGGTTACTGGACGATCGTAGAA--GTTCATAGAG 816
Query 778 CTGATCAAGTCAAAGTCCGGG-ATAGTTATTGGTTTCAAGAAGG-TGTTTAAGTT-TCAT 834
| ||||||||||| | ||| | | || |||||| || | ||| | ||| |||| ||
Sbjct 817 GT-ATCAAGTCAAAAACAGGGGAGA-TTCTTGGTTACA-GTAGGGTTTTTCAGTTATCG- 872
Query 835 GAAACGGAGAAAGAAAGATACT-TCTGTGGTGGAGAAGATGTGAAGGTAAC---TTGGAC 890
|||| ||| || || | ||| | |||| |||||||||||||| | ||| |||||
Sbjct 873 GAAAATGAGGAACCAATA-ACTGTTTGTGAAGGAGAAGATGTGAATGAAACAGCTTGGAT 931
Query 891 TCTAGAAGAGTATAGGCTT-AGCGT---GAAGCAGAA---TAAATTCTTGTGCGTTATCA 943
| ||||||||||||||||| | || |||| |||| |||| | |||||||||||||
Sbjct 932 TATAGAAGAGTATAGGCTTGA-CGAAAAGAAGAAGAAGGATAAAGTGTTGTGCGTTATCA 990
Query 944 AG 945
||
Sbjct 991 AG 992
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35759296146
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5