BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G60350.1 Length=963 Score E Sequences producing significant alignments: (Bits) Value Ahg475292 jgi|Araly1|475292|fgenesh2_kg.2__422__AT1G60350.1 1301 0.0 Ahg338342 jgi|Araly1|338342|fgenesh1_pg.C_scaffold_2000441 1081 0.0 Ahg925045 jgi|Araly1|925045|scaffold_200606.1 1007 0.0 Ahg925028 jgi|Araly1|925028|scaffold_200589.1 721 0.0 > Ahg475292 jgi|Araly1|475292|fgenesh2_kg.2__422__AT1G60350.1 Length=957 Score = 1301 bits (704), Expect = 0.0 Identities = 880/964 (91%), Gaps = 15/964 (2%) Strand=Plus/Plus Query 1 ATGGAGGAAGATGCAGCTTTTGATCTACTCAAAGCCGAACTCTTAAACGCAGAAGACGAT 60 ||||| || || ||||||||||||||| ||||||||||||| ||||| ||||||||||| Sbjct 1 ATGGAAGACGACGCAGCTTTTGATCTAATCAAAGCCGAACTGTTAAATGCAGAAGACGAG 60 Query 61 GCAATAATCTCACGTTATCTGAAGCGTATGGTCGTCAACGGAGACTCATGGCCTGATCAC 120 | |||||||| ||||||||||||||||||| |||| |||||||| || |||||||||||| Sbjct 61 GTAATAATCTTACGTTATCTGAAGCGTATGATCGTTAACGGAGATTCTTGGCCTGATCAC 120 Query 121 TTCATCGAAGACGCAGACGTGTTCAACAAGAATCCAAATGTGGAGTTCGATGCTGAGAGC 180 |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 121 TTCATCAAAGACGCAGACGTGTTCAACAAGAATCCAAATGTGGTGTTCGATGCTGAGAGC 180 Query 181 CCTAGCTTCGTGATAGTTAAACCTCGAACAGAGGCTTGTGGTAAAACCGATGGATGTGAA 240 |||||||||||||| |||||||| ||||||||| ||||||| |||||||||||||||| Sbjct 181 CCTAGCTTCGTGATCGTTAAACCACGAACAGAGATTTGTGGTGGAACCGATGGATGTGAA 240 Query 241 ACTGGTTGCTGGAGGATCATGGGTCGTGATAAACCGATAAAATCGACGGAGACTGTGAAG 300 |||||||||||||||||||||||||||| |||| ||||||||||| | |||||| |||| Sbjct 241 TCTGGTTGCTGGAGGATCATGGGTCGTGAGAAACTGATAAAATCGAAGAAGACTGGGAAG 300 Query 301 ATTCAAGGGTTCAAGAAGATTCTCAAGTTCTGCCTAAAGAGGAAACCTAGAGGATACAAG 360 |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 301 ATTCTAGGGTTCAAGAAGATTCTCAAGTTCTGCCTAAAGAGGAAACCTAGAGAATACAAG 360 Query 361 AGAAGTTGGGTAATGGAAGAGTATAGGCTTACCAATAACTTGAACTGGAAGCAAGATCAT 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 AGAAGTTGGGTAATGGAAGAGTATAGGCTTACCAATAACTTGAACTGGAAGCAAGATCAT 420 Query 421 GTGATTTGCAAGATTCGGTTTATGTTTGAAGCTGAAATCAGTTTCTTGCTAGCCAAGCAT 480 |||||||| |||||||| ||| |||||||| | ||||| |||||| |||||||||||||| Sbjct 421 GTGATTTGTAAGATTCGATTTTTGTTTGAATCCGAAATTAGTTTCGTGCTAGCCAAGCAT 480 Query 481 TTCTACACTACATCAGAATCACTTCCTCGAAATGAGCTGTTGCCAGCTTACGGATTCCTT 540 ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| Sbjct 481 TTCTACACTACATCAGAATCACTTCCTCGTAATGAGCTGTTGCCAGCTTATGGATTCCTT 540 Query 541 TCATCAGATAAGCAATTGGAGGATGTATCTTATCCGGTGACGATAATGACTTCTGAAGGA 600 ||||||||||| ||| | |||||| ||||||||| ||||||||| ||||||||||||||| Sbjct 541 TCATCAGATAAACAAGTAGAGGATATATCTTATCTGGTGACGATCATGACTTCTGAAGGA 600 Query 601 --AA-CGATTGGCCTAGCTACGTTACCAACAATGTGTATTGTCTGCATCCATTGGAGCTC 657 || ||||||||||||||||||||||||| | |||||||| ||||||||| ||||||| Sbjct 601 TTAAACGATTGGCCTAGCTACGTTACCAACGACGTGTATTGCCTGCATCCACTGGAGCTT 660 Query 658 GTTGATCTTCAAGATCGGATGTTTAATGATT-ACGGAACC-TGCATCTTCGCTAACAAGA 715 | ||||||||||||||||||||| || ||| |||||||| | |||||| ||||||||| Sbjct 661 GCGGATCTTCAAGATCGGATGTTTCAT-ATTTACGGAACCCTT-ATCTTCTCTAACAAGA 718 Query 716 CTTGTGGTAAAACCGATAGATGCATTAATGGTGGTTACTGGAAAATTTTGCACCGTGATA 775 |||||||||||||||||||||||| | |||||||||||||| || ||||||||||||| Sbjct 719 CTTGTGGTAAAACCGATAGATGCA--A-TGGTGGTTACTGGAGGATCTTGCACCGTGATA 775 Query 776 GGCTGATCAAGTCAAAGTCCGGGATAGTT-ATTGGTTTCAAGAAGGTGTTTAAGTT-TCA 833 ||||||||||||||||||||||| || ||||||||||||||||| |||||||| | | Sbjct 776 AGCTGATCAAGTCAAAGTCCGGGA-AGACCATTGGTTTCAAGAAGGTTTTTAAGTTCT-A 833 Query 834 TGAAACGGAGAAAGAAAGATACTTCTGTGGTGGAGAAGATGTGAAGGTAACTTGGACTCT 893 |||||||||||| ||||||||||| |||| || ||||||||||||| ||||||||||| | Sbjct 834 TGAAACGGAGAAGGAAAGATACTTTTGTGATGAAGAAGATGTGAAGATAACTTGGACTAT 893 Query 894 AGAAGAGTATAGGCTTAGCGTGAAGCAGAATAAATTCTTGTGCGTTATCAA-GTTTACTT 952 ||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||| Sbjct 894 AGAAGAGTATAGGCTTAACGTGAAGCAGAATAAATTCGTGTGCGTTATCAAAGTTTACTT 953 Query 953 ATGA 956 |||| Sbjct 954 ATGA 957 > Ahg338342 jgi|Araly1|338342|fgenesh1_pg.C_scaffold_2000441 Length=1896 Score = 1081 bits (585), Expect = 0.0 Identities = 808/913 (88%), Gaps = 26/913 (3%) Strand=Plus/Plus Query 14 CAGCTTTTGATCTACTCAAAGCCGAACTCTTAAACGCAGAAGACGATGCAATAATCTCAC 73 |||||| ||||| | ||||||||||||| ||||||||||||||||| | ||||||||||| Sbjct 11 CAGCTTATGATCGAATCAAAGCCGAACTGTTAAACGCAGAAGACGAAGTAATAATCTCAC 70 Query 74 GTTATCTGAAGCGTATGGTCGTCAACGGAGACTCATGGCCTGATCACTTCATCGAAGACG 133 ||||||||||||||||| |||| |||||||| || |||||| |||||||||| ||| ||| Sbjct 71 GTTATCTGAAGCGTATGATCGTTAACGGAGATTCTTGGCCTAATCACTTCATTGAATACG 130 Query 134 CAGACGTGTTCAACAAGAATCCAAATGTGGA-GTTCGA-TGCTGAGAGCCCTAGCTTCGT 191 ||||||||||||||||| ||||||||| || ||| | | ||||||| ||||| ||||| Sbjct 131 CAGACGTGTTCAACAAGGATCCAAATG-AGATATTC-AGTTCTGAGAGACCTAGATTCGT 188 Query 192 GATAGTTAAACCTCGAACAGAGG-CTTGTGGTAAAACCGATGGATGTGA--AA-CTGGTT 247 ||| |||||||||||||||| || |||||||||||||||||||||||| || |||||| Sbjct 189 GATCGTTAAACCTCGAACAG-GGAATTGTGGTAAAACCGATGGATGTGATGAATCTGGTT 247 Query 248 GCTGGAGGATCATGGGTCGTGATAAACCGATAAAATC-GACGGAGACTGTGAAGATTCAA 306 ||||||||||||||| ||||||||||| |||||| || || |||||||| |||||||| | Sbjct 248 GCTGGAGGATCATGGCTCGTGATAAACTGATAAAGTCGGA-GGAGACTGGGAAGATTCTA 306 Query 307 GGGTTCAAGAAGATTCTCAAGTTCTGCCTAAAGAGGAAACCTAGAGGATACAAGAGAAGT 366 |||||||||||||| |||||||||||||||||| |||||||||||| ||||||||| ||| Sbjct 307 GGGTTCAAGAAGATCCTCAAGTTCTGCCTAAAGTGGAAACCTAGAGAATACAAGAGGAGT 366 Query 367 TGGGTAATGGAAGAGTATAGGCTTACC-AATAACTTGAACTGGAAGCAAGATCATGTGAT 425 |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 367 TGGGTAATGGAAGAGTATAGGCTT-CCTAATAACTTGAACTGGAAGCAAGATCATGTGAT 425 Query 426 TTGCAAGATTCGGTTTATGTTTGAAGCTGAAATCAGTTTCTTGCTAGCCAAGCATTTCTA 485 |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| Sbjct 426 TTGCAAGATTCGGTTTCTGTTTGAAGCTGAAATTAGTTTCTTGCTAGCCAAGCATTTCTA 485 Query 486 CACTACATCAGAATCACTTCCTCGAAATGAGCTGTTGCCAGCTTACGGATTCCT-TTCAT 544 |||||||||||||||||||||||| |||||||||||||||||||| ||||| || | || Sbjct 486 CACTACATCAGAATCACTTCCTCGTAATGAGCTGTTGCCAGCTTATGGATT-CTATCCA- 543 Query 545 CA-GAT-AAGCAATTGGAGGATGTATCTTATCCGGTGACGATAATGACTTCTGAAGGAAA 602 || | || ||| ||| |||| ||||||| | ||||||||||||||||||||||||| Sbjct 544 CATTCTGAA-CAAGAGGATGATGAATCTTATTTGTTGACGATAATGACTTCTGAAGGAAA 602 Query 603 CGATTGGCCTAGCTACGTTACCAACAATGTGTATTGTCTGCATCCATTGGAGCTCGTTGA 662 ||||||||||||||||||||||||||| ||||||||||||||||| || ||||| || || Sbjct 603 CGATTGGCCTAGCTACGTTACCAACAACGTGTATTGTCTGCATCCTTTCGAGCTTGTGGA 662 Query 663 TCTTCAAGATCGGATGTTTAATGATTACGGAACCTGCATCTTCGCTAACAAGACTTGTGG 722 ||||| ||||||||||||| |||||||||||| ||||||| ||||||||||||| |||| Sbjct 663 TCTTCGAGATCGGATGTTTTGTGATTACGGAACATGCATCTACGCTAACAAGACTGGTGG 722 Query 723 TAAAACCGATAGATGCATTAATGGTGGTTACTGGAAAATTTTGCACCGTGATAGGCTGAT 782 | |||| |||| || || ||||||||||||||||| || ||||||||||||||| ||| Sbjct 723 TGAAACGGATATAT--AT-AATGGTGGTTACTGGAAGATCCTGCACCGTGATAGGCCGAT 779 Query 783 CAAGTCAAAGTCCGGGATAGTT-ATTGGTTTCAAGAAGGTGTTTAAGTTTCATGAAACGG 841 ||||||||||||||||| || ||||||||||||||||| ||| ||||| ||||| ||| Sbjct 780 CAAGTCAAAGTCCGGGA-AGACCATTGGTTTCAAGAAGGTTTTTCAGTTTTATGAACCGG 838 Query 842 AGAAAGAAAGATACTTCT-GTGGTGGAGAAGATGTGAAGGTAACTTGGACTCTAGAAGAG 900 ||| ||||||| | || | || |||| |||| |||||| || |||||| | |||||||| Sbjct 839 AGAGAGAAAGA-ATTTTTTGTAATGGACAAGAAGTGAAGATAGCTTGGATTATAGAAGAG 897 Query 901 TATAGGCTTAGCG 913 ||||||||||||| Sbjct 898 TATAGGCTTAGCG 910 Score = 981 bits (531), Expect = 0.0 Identities = 835/976 (86%), Gaps = 43/976 (4%) Strand=Plus/Plus Query 1 ATGGAGGAA-GATGCAGCTTTTGATCTACTCAAAGC-CGAACTCTTAAACGCAGAAGACG 58 ||||| ||| || ||||||| ||||||| ||||| | |||||| |||||||||||||||| Sbjct 949 ATGGA-GAACGACGCAGCTTATGATCTAATCAAA-CACGAACTGTTAAACGCAGAAGACG 1006 Query 59 ATGCAATAATCTCACGTTATCTGAAGCGTATGGTCGTCAACGGAGACTCATGGCCTGATC 118 | | |||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||| Sbjct 1007 AAGTAATAATCTCACGTTATCTGAAGGGTATGATCGTCAACGGAGATTCATGGCCTGATC 1066 Query 119 ACTTCATCGAAGACGCAGACGTGTTCAACAAGAATCCAAATGTGGAGTTCGATGCTGAGA 178 ||||||||| ||||||| |||| ||||||||||||||||||| || |||| || |||||| Sbjct 1067 ACTTCATCGTAGACGCAAACGTATTCAACAAGAATCCAAATGAGGTGTTCAATTCTGAGA 1126 Query 179 GCCCTAGCTTCGTGATAGTTAAACCTCGAACAGAGGCTTGTGGTAAAACCGATGGATGTG 238 | ||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||| Sbjct 1127 GACCTAGATTCGTGATCGTTAAACCACGAACAGAGGCTTGTGGTAAAACCGATGGATGTG 1186 Query 239 AAACTGGTTGCTGGAGGATCATGGGTCGTGATAAACCGATAAAATC-GACGGAGACTGTG 297 || ||||||||||||||||||||||||||||||||| |||||| || || |||||||| | Sbjct 1187 AATCTGGTTGCTGGAGGATCATGGGTCGTGATAAACTGATAAAGTCGGA-GGAGACTGGG 1245 Query 298 AAGATTCAAGGGTTCAAGAAGATTCTCAAGTTCTGCCTA-AAGAGGAAACCTAGAGGATA 356 ||||||| ||||||||||||||||||||||||||| | | |||| |||||| |||| ||| Sbjct 1246 AAGATTCTAGGGTTCAAGAAGATTCTCAAGTTCTG-CAAGAAGACGAAACCAAGAGAATA 1304 Query 357 CAAGAGAAGTTGGGTAATGGAAGAGTATAGGCTTACCAATAACTTGAACTGGAAGCAAGA 416 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1305 CAAGAGAAGTTGGGTAATGGAAGAGTATAGGCTTACCAAGAACTTGAACTGGAAGCAAGA 1364 Query 417 TCATGTGATTTGCAAGATTCGGTTTATGTTTGAAGCTGAAATCAGTTTCTTGCTAGCCAA 476 |||||| ||||||||||||||||| |||||||||||||| || |||||||||||| || Sbjct 1365 TCATGTCATTTGCAAGATTCGGTTAATGTTTGAAGCTGAGATTAGTTTCTTGCTAAAGAA 1424 Query 477 GCATTTCTACACTACATCAGAATCACTTCCTCGAAATGAGCTGTTGCCAGCTTACGGATT 536 |||||||||||||||||||||||| ||| | |||||| | |||||||| |||| |||| Sbjct 1425 GCATTTCTACACTACATCAGAATCGGTTCTTGGAAATGGGTTGTTGCCATCTTATGGATA 1484 Query 537 CCTTTCATCAGA-TAAGCAATTGGAGGATGTATCTTATCCGGTGACGATAATGACTTCTG 595 || ||||| | || |||| |||||||| ||||||| || ||||||| |||||| || Sbjct 1485 --TT-CATCA-ACTACGCAAGAGGAGGATGAATCTTATATGGAGACGATAGTGACTTGTG 1540 Query 596 AAGGAAACGATTGGCCTAGCTACGTTACCAACAATGTGTATTGTCTGCATCCATTGGAGC 655 |||||||| ||||||||||||||||||||||| | ||||| |||||||||||| |||| | Sbjct 1541 AAGGAAACTATTGGCCTAGCTACGTTACCAACGACGTGTACTGTCTGCATCCAATGGACC 1600 Query 656 TCGTTGATCTTCAAGATCGGATGTTTAATGATTACGGAACCTGCATCTTCGCTAACAAGA 715 | || |||| |||||||| ||||||| ||||||||||||||||||||||||||||| || Sbjct 1601 TTGTGGATCCTCAAGATCCGATGTTTCATGATTACGGAACCTGCATCTTCGCTAACGGGA 1660 Query 716 CTTGTGGTAAAACCGATAGATGCATTAATGGTGGTTACTGGAAAATTTTGCACCGTGATA 775 |||||||| |||| |||| |||| | ||||||||||||||| || |||||| ||||| Sbjct 1661 CTTGTGGTGAAACTGATAAATGCG--A-TGGTGGTTACTGGAAGATCCTGCACCATGATA 1717 Query 776 GGCTGATCAAGTCAAAGTCCGGGATAG-TTATTGGTTTCAAGAAGGTGTTTAAGTTTCAT 834 |||||||| | | |||| || ||| ||||||||||||||| ||||||||| || Sbjct 1718 AGCTGATCA---C-----C-GGGA-AGGTTAATGGTTTCAAGAAGGTTTTTAAGTTTTAT 1767 Query 835 GAAACGGAGAAAGAAAGATACTTCTGTGGT-GGAGAAGATGTGAAGGTAACTTGGACTCT 893 ||||| ||| || | | || || || || ||| | ||||| |||||||||||| | Sbjct 1768 GAAACAC-GAA-GATA--TG-TT-TG-GGAAGGTGAATACGTGAACGTAACTTGGACTAT 1820 Query 894 AGAAGAGTATAGGCTTAGCGTGAAGCAGAA------TAAATTCTTGTGCGTTATCAAGTT 947 |||||||||||||||||||| ||| |||| |||| | | |||||||||||||| Sbjct 1821 AGAAGAGTATAGGCTTAGCGAAAAGGAGAAGGAGGATAAAGTGATATGCGTTATCAAGTT 1880 Query 948 TACT-TATGATAACTA 962 ||| | ||||||||| Sbjct 1881 TACCCT-TGATAACTA 1895 > Ahg925045 jgi|Araly1|925045|scaffold_200606.1 Length=982 Score = 1007 bits (545), Expect = 0.0 Identities = 830/964 (86%), Gaps = 33/964 (3%) Strand=Plus/Plus Query 14 CAGCTTTTGATCTACTCAAAGCCGAACTCTTAAACGCAGAAGACGATGCAATAATCTCAC 73 |||||| ||||| | ||||||||||||| ||||||||||||||||| | ||||||||||| Sbjct 31 CAGCTTATGATCGAATCAAAGCCGAACTGTTAAACGCAGAAGACGAAGTAATAATCTCAC 90 Query 74 GTTATCTGAAGCGTATGGTCGTCAACGGAGACTCATGGCCTGATCACTTCATCGAAGACG 133 ||||||||||||||||| |||| |||||||| || ||||||| | ||||||||||||||| Sbjct 91 GTTATCTGAAGCGTATGATCGTTAACGGAGATTCTTGGCCTGCTAACTTCATCGAAGACG 150 Query 134 CAGACGTGTTCAACAAGAATCCAAATGTGGAGTTCGATGCTGAGAGCCCTAGCTTCGTGA 193 || |||||||||||||||||||| |||||||||| ||| |||| ||| |||||||||||| Sbjct 151 CAAACGTGTTCAACAAGAATCCATATGTGGAGTTTGATTCTGATAGCACTAGCTTCGTGA 210 Query 194 TAGTTAAACCTCGAACAGAGGCTTGTGGTAAAACCGATGGATGTGAAACTGGTTGCTGGA 253 | ||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||| Sbjct 211 TCGTTAAACCTAGAACAGAGGCTTGTGGTAAAACCGATGGATGTGAATCGGGTTGCTGGA 270 Query 254 GGATCATGGGTCGTGATAAACCGATAAAATCGACGGAGACTGTGAAGATTCAAGGGTTCA 313 ||||||| ||||||||||||| || ||||||| | ||||| |||||||| |||||||| Sbjct 271 GGATCATCGGTCGTGATAAACTTATCAAATCGAAAGCGACTGGGAAGATTCTAGGGTTCA 330 Query 314 AGAAGATTCTCAAGTTCTGCCTA-AAGAGGAAACCTAGAGGATACAAGAGAAGTTGGGTA 372 ||||||||||||||||||| | | |||| ||||||||||| ||||||||||||| ||||| Sbjct 331 AGAAGATTCTCAAGTTCTG-CAAGAAGACGAAACCTAGAGAATACAAGAGAAGTCGGGTA 389 Query 373 ATGGAAGAGTATAGGCTTACCAATAACTTGAACTGGAAGCAAGATCATGTGATTTGCAAG 432 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 390 ATGGAAGAGTATAGGCTTACCAATAACTTGAACTGGAAGCAAGATCATGTGATTTGCAAG 449 Query 433 ATTCGGTTTATGTTTGAAGCTGAAATCAGTTTCTTGCTAGCCAAGCATTTCTACACTACA 492 ||||||||| ||||||||||||| || |||||||||||| |||||||||||||||||||| Sbjct 450 ATTCGGTTTCTGTTTGAAGCTGAGATTAGTTTCTTGCTAACCAAGCATTTCTACACTACA 509 Query 493 TCAGAATCACTTCCTCGAAATGAGCTGTTGCCAGCTTACGGATTCCT-TTCATCAGAT-A 550 ||| |||||| || ||| |||||||||||||||||||| |||||| | ||| || || | Sbjct 510 TCAAAATCACCTCTTCGTAATGAGCTGTTGCCAGCTTATGGATTC-TATTC--CA-ATGA 565 Query 551 AGCAATTGGAGGATGTATCTTATCCG-GTGACGATAATGACTTCTGAAGGAAACGATTGG 609 | ||| | | |||| || |||| | |||| |||||||| ||||||||||||||||||| Sbjct 566 A-CAAGAGAATGATGAATTTTATT-GTGTGAAGATAATGAGTTCTGAAGGAAACGATTGG 623 Query 610 CCTAGCTACGTTACCAACAATGTGTATTGTCTGCATCCATTGGAGCTCGTTGATCTTCAA 669 |||||||||||||||||||| |||||||||||||||||||||||||| || |||| |||| Sbjct 624 CCTAGCTACGTTACCAACAACGTGTATTGTCTGCATCCATTGGAGCTTGTGGATCCTCAA 683 Query 670 GATCG-GATGTTT-AATGATTACGGAACCTGCATCTTCGCTAACAAGACTTGTGGTAAAA 727 ||| | || |||| || | || ||||| |||||| ||||||||||||||| | || || Sbjct 684 GAT-GAGAAGTTTCAACGTTT-CGGAATCTGCATATTCGCTAACAAGACTAAAGCTATAA 741 Query 728 CCGATAGATGCATTAATGGTGGTTACTGGAAAATTTTGCACCGTGATAGGCTGATCAAGT 787 |||| |||| | ||||||||||||||| | || | || |||||||| ||||||| Sbjct 742 GAGATAAATGCG--A-TGGTGGTTACTGGAAGCTCTTACGCCATGATAGGCCGATCAAGG 798 Query 788 CAAAGTCCGGGATAGTTATTGGTTTCAAGAAGG-TGTTTAAGTTTCATGAAACGGAGAAA 846 || ||| ||||| ||||||| ||||| || | ||| ||||| ||||||||||||| Sbjct 799 CAGAGTTCGGGACC---ATTGGTTACAAGA-GGCTTTTTGAGTTTTGTGAAACGGAGAAA 854 Query 847 GAAAGA-TACTTCT-GTGGTGGAGAAGATGTGAAGGTAACTTGGACTCTAGAAGAGTATA 904 ||| || || | || || |||| ||||||||||||||||||||||| |||||||||||| Sbjct 855 GAA-GAATA-TGCTCGTAATGGAAAAGATGTGAAGGTAACTTGGACTATAGAAGAGTATA 912 Query 905 GGCTTAGC------GTGAAGCAGAATAAATTCTTGTGCGTTATCAAGTTTACTTATGATA 958 |||||||| ||||||| ||||| |||||||||||||||| || || |||||| Sbjct 913 GGCTTAGCAAAAACGTGAAGCGGAATAGGTTCTTGTGCGTTATCAGGTAAACCGATGATA 972 Query 959 ACTA 962 |||| Sbjct 973 ACTA 976 > Ahg925028 jgi|Araly1|925028|scaffold_200589.1 Length=1042 Score = 721 bits (390), Expect = 0.0 Identities = 783/962 (81%), Gaps = 69/962 (7%) Strand=Plus/Plus Query 29 TCAAAGCCGAACT-CTTAAACGCAGAAGACGATGCAATAATCTCACGTTATCTGAAGCGT 87 |||||| |||||| | ||| ||||||||||||| ||||||||||||||| ||||||||| Sbjct 55 TCAAAGACGAACTGATCAAA-GCAGAAGACGATGTAATAATCTCACGTTACCTGAAGCGT 113 Query 88 ATGGTCGTCAACGGAGACTCATGGCCTGATCACTTCATCGAAGACGCAGACGTGTTCAAC 147 ||| |||| |||||||| |||||||||||||||||||||||||||| ||||||||||||| Sbjct 114 ATGATCGTTAACGGAGATTCATGGCCTGATCACTTCATCGAAGACGTAGACGTGTTCAAC 173 Query 148 AAGAATCCAAATGTGGAGTTCGATGCTGAGAGCCCTAGCTTCGTGATAGTTAAACCTCGA 207 ||||||||||||| |||||| || || |||| |||| ||| |||| |||||| | ||| Sbjct 174 AAGAATCCAAATGAGGAGTTTTATTCTCCGAGCACTAGATTCCTGATCGTTAAAACACGA 233 Query 208 ACAGAGGCTTGTGGTAAAACCGATGGATGTGAAACTGGTTGCTGGAGGATCATGGGTCGT 267 |||||||||||||||| |||||||||||||||| | ||||||||||||||||| |||||| Sbjct 234 ACAGAGGCTTGTGGTAGAACCGATGGATGTGAATCGGGTTGCTGGAGGATCATTGGTCGT 293 Query 268 GATAAACCGATAAAATCGACGGAGACTGTGAAGATTCAAGGGTTCAAGAAGATTCTCAAG 327 ||||||| ||||||||||| |||||||| ||| |||| |||||||||||||||||||||| Sbjct 294 GATAAACTGATAAAATCGAAGGAGACTGGGAATATTCTAGGGTTCAAGAAGATTCTCAAG 353 Query 328 TTCTGCCTAAAGAGGAAACCTAGAGGATACAAGAGAAGTTGGGTAATGGAAGAGTATAGG 387 |||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 354 TTCTGCTTAAAGACGAAACCTAGAGAATACAAGAGAAGTTGGGTAATGGAAGAGTATAGG 413 Query 388 CTTACCAATAACTTGAACTGGAAGCAAGATCATGTGATTTGCAAGATTCGGTTTATGTTT 447 |||||||||||||||||| ||||||||||||||| |||||||||||||||||| |||| Sbjct 414 GTTACCAATAACTTGAACTCGAAGCAAGATCATGTCATTTGCAAGATTCGGTTTCTGTTC 473 Query 448 GAAGCTGAAATCAGTTTCTTGCTAGCCAAGCATTT--C-TA-CACTACA-TCAGAATCAC 502 |||||||| |||||||||||||| ||||||||||| | || | || || | || |||| Sbjct 474 GAAGCTGAGATCAGTTTCTTGCTTGCCAAGCATTTATCGTATCTCTCCACT-AGG-TCAC 531 Query 503 T---TCCT-CGAAATGAGCTGTTGCCAGCTTACGGA-T-TCCTTTCAT-CAGATA-AGCA 554 |||| | |||| | ||||||||||||| ||| | | ||| || | |||| || | Sbjct 532 CGCGTCCTGC-AAATCAATTGTTGCCAGCTTATGGAGTGTG-TTT-ATTC-GATACAG-A 586 Query 555 ATTGGAGGATGTATCTTATCCGGTGACGATAAT-GACTT-CTGAAGGAAACGA-TTGGCC 611 | ||||| || || ||||| | || |||||| || || | || |||||| | |||||| Sbjct 587 AGCGGAGGGTGCATTTTATCTGCAGAAGATAATCGA-TTAC-GATGGAAAC-ACTTGGCC 643 Query 612 TAGCTACGTTACCAACAATGTGTATTGTCTGCATCCATTGGA-GCTCGTTGATCTTCAAG 670 |||||||||||| ||||||||||| || ||||||||| | | ||| || |||| ||||| Sbjct 644 TAGCTACGTTACGAACAATGTGTACCGTTTGCATCCATCG-ACGCTTGTGGATCCTCAAG 702 Query 671 ATCGG-ATGTTTAATGA-TTACGGAACCTGCATCTTCGCTAAC---A-AGA--CTTGTGG 722 || | | |||||| || || |||||| || ||||| |||||| | | | ||||||| Sbjct 703 AT-GACAAGTTTAAAGAGTT-CGGAACATGTATCTTTGCTAACCGGACAAAGGCTTGTGG 760 Query 723 TAAAACCGATAGA-TGC-ATTAATGGTGGTTACTGGAAAATTTT-GCACCGTG-ATAG-G 777 |||||||||| || ||| || |||||||||||||| || | | | || |||| | Sbjct 761 TAAAACCGAT-GAATGCGATGG-TGGTGGTTACTGGACGATCGTAGAA--GTTCATAGAG 816 Query 778 CTGATCAAGTCAAAGTCCGGG-ATAGTTATTGGTTTCAAGAAGG-TGTTTAAGTT-TCAT 834 | ||||||||||| | ||| | | || |||||| || | ||| | ||| |||| || Sbjct 817 GT-ATCAAGTCAAAAACAGGGGAGA-TTCTTGGTTACA-GTAGGGTTTTTCAGTTATCG- 872 Query 835 GAAACGGAGAAAGAAAGATACT-TCTGTGGTGGAGAAGATGTGAAGGTAAC---TTGGAC 890 |||| ||| || || | ||| | |||| |||||||||||||| | ||| ||||| Sbjct 873 GAAAATGAGGAACCAATA-ACTGTTTGTGAAGGAGAAGATGTGAATGAAACAGCTTGGAT 931 Query 891 TCTAGAAGAGTATAGGCTT-AGCGT---GAAGCAGAA---TAAATTCTTGTGCGTTATCA 943 | ||||||||||||||||| | || |||| |||| |||| | ||||||||||||| Sbjct 932 TATAGAAGAGTATAGGCTTGA-CGAAAAGAAGAAGAAGGATAAAGTGTTGTGCGTTATCA 990 Query 944 AG 945 || Sbjct 991 AG 992 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35759296146 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5