BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G60360.1
Length=984
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922802 jgi|Araly1|922802|scaffold_104083.1 1363 0.0
Ahg495284 jgi|Araly1|495284|fgenesh2_kg.8__1100__AT5G52140.1 54.7 1e-06
> Ahg922802 jgi|Araly1|922802|scaffold_104083.1
Length=1022
Score = 1363 bits (738), Expect = 0.0
Identities = 906/987 (92%), Gaps = 11/987 (1%)
Strand=Plus/Plus
Query 1 ATGTCATTGAGTCAG-CCAATAACACGGACCGATAGTGCACCCAATGGAGCATTTAGGAC 59
||||||||||||| | || ||||||||||||||| ||||| |||||||||||||||||||
Sbjct 22 ATGTCATTGAGTCGGTCC-ATAACACGGACCGATGGTGCATCCAATGGAGCATTTAGGAC 80
Query 60 TTTTGGTCTCTACTGGTGCTACCATTGTGATCGTATGGTCAGAATTGCATCCTCTAACCC 119
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 81 TTTTGGTCTCTACTGGTGCTACCATTGTAATCGTATGGTCAGAATTGCATCCTCTAACCC 140
Query 120 ATCAGAGATCGCCTGTCCTCGATGTTTGAGGCAATTTGTCGTTGAGATTGAAACGAGACA 179
||| |||||||| || |||||||| ||||| ||||||||||| ||||||||||| | |
Sbjct 141 ATCTGAGATCGCGTGCCCTCGATGCTTGAGACAATTTGTCGTCGAGATTGAAAC-A-A-G 197
Query 180 ACGGCCTCGGTTTACTTTCAACCATGCTACTCCGCCTTTTGATGCTTCTCCTGAGGCTCG 239
|||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||
Sbjct 198 ACGGCCTCGGTTTACTCTCAATCATGCTGCTCCGCCTTTTGATGCTTCTCCTGAGGCTCG 257
Query 240 TCTTCTCGAAGCTCTCTCGCTCATGTTTGAGCCTGCAACCATAGGTAGGTTTGGTGCAGA 299
||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||
Sbjct 258 TCTTCTCGAAGCTCTATCGCTCATGTTTGAGCCTGCAATTATAGGTGGGTTTGGTGCAGA 317
Query 300 CCCATTTCTTAGGGCAAGATCCAGAAACATCTTGGAACCTGAATCAAGACCCCGACCGCA 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 318 CCCATTTCTTAGGGCAAGATCCAGAAACATCTTGGAACCTGAATCAAGACCCCGACCACA 377
Query 360 ACATCGAAGACGACACAGCCTTGACAATGTTAACAATGGTGGTTTACCTCTACCAAGAAG 419
||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 378 ACATCGACGACGCCACAGCCTTGACAATGTTAACAATGGTGGTTTGCCTCTACCAAGAAG 437
Query 420 AACATATGTTATTCTCCGGCCCAATAATCCGACTAGTCCACTCGGAAACATAATTGCGCC 479
| |||| || |||||||| |||||||||| |||||| |||||||||||||||| ||||
Sbjct 438 AGCATACGTAATTCTCCGACCCAATAATCGGACTAGAGAACTCGGAAACATAATTCCGCC 497
Query 480 ACCAAATCAAGCACCACCAC-GGCATGTGAACTCACATGATTACTTTACTGGAGCATCAA 538
|||||||||||||||||| | |||||||||||||| | |||| |||||| |||||||||
Sbjct 498 ACCAAATCAAGCACCACC-CTGGCATGTGAACTCAAACGATTTCTTTACCGGAGCATCAG 556
Query 539 GCTTAGAGCAGCTGATTGAACAACTAACACAAGACGATAGGCCTGGACCACCACCTGCGT 598
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
Sbjct 557 GCTTAGAGCAGCTGATTGAACAACTAACACAAGATGATAGGCCTGGACCACTGCCTGCAT 616
Query 599 CAGAACCCACCATTAATTCCCTACCATCTGTGAAAATAACACCACAACATCTAACTAACG 658
||||||| | |||| || | |||||||||||||| ||||||| |||||||||||| ||||
Sbjct 617 CAGAACCTATCATTGATGCGCTACCATCTGTGAAGATAACACAACAACATCTAACCAACG 676
Query 659 ACATGTCCCAATGCACAGTGTGCATGGAAGAATTCATTGTTGGTGGGGACGCAACGGAAT 718
|| || ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 677 ACTTGACCCAATGCACAGTGTGCATGGAAGAATTCATTGTTGGTGGGGATGCAACAGAAT 736
Query 719 TACCATGTAAACATATTTACCATAAAGATTGTATAGTCCCGTGGCTTAGGCTTAACAATT 778
|||| |||||||||||||||||||||||||||||| |||||||||| |||||| ||||||
Sbjct 737 TACCGTGTAAACATATTTACCATAAAGATTGTATAATCCCGTGGCTCAGGCTTCACAATT 796
Query 779 CTTGCCCTATCTGCCGCCGTGACCTGCCACTTGTCAACACCGTTGCTGAATCTCGAGAAA 838
||||||||||||| ||| |||||||||||| |||||||||||||||||| ||||||||||
Sbjct 797 CTTGCCCTATCTGTCGCAGTGACCTGCCACCTGTCAACACCGTTGCTGATTCTCGAGAAA 856
Query 839 GGAGCAATCCTATTAGACAAGACATGCCTGAAAGAAGGCGTCCAAGGTGGATGCAACTCG 898
|||||||||||| |||||||||||| |||||||||||||||||||||||||| || || |
Sbjct 857 GGAGCAATCCTACTAGACAAGACATACCTGAAAGAAGGCGTCCAAGGTGGATACAGCTTG 916
Query 899 GTAACATTTGGCCATTTAGAGCAAGATACCAAAGGGTTAGTCCAGAAGAAACAGCAAACC 958
| ||||||||||| ||||||||| |||||||||| |||||||||||||||||| ||||||
Sbjct 917 GGAACATTTGGCCCTTTAGAGCACGATACCAAAGAGTTAGTCCAGAAGAAACAACAAACC 976
Query 959 AGAATCCTCGA-GATAAC-AGGAGCTA 983
||||||||||| | || | ||||||||
Sbjct 977 AGAATCCTCGAAG-TA-CTAGGAGCTA 1001
> Ahg495284 jgi|Araly1|495284|fgenesh2_kg.8__1100__AT5G52140.1
Length=884
Score = 54.7 bits (29), Expect = 1e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 721 CCATGTAAACATATTTACCATAAAGATTG 749
|||||||||||||||||||||||||||||
Sbjct 751 CCATGTAAACATATTTACCATAAAGATTG 779
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36559877403
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5