BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G60360.1 Length=984 Score E Sequences producing significant alignments: (Bits) Value Ahg922802 jgi|Araly1|922802|scaffold_104083.1 1363 0.0 Ahg495284 jgi|Araly1|495284|fgenesh2_kg.8__1100__AT5G52140.1 54.7 1e-06 > Ahg922802 jgi|Araly1|922802|scaffold_104083.1 Length=1022 Score = 1363 bits (738), Expect = 0.0 Identities = 906/987 (92%), Gaps = 11/987 (1%) Strand=Plus/Plus Query 1 ATGTCATTGAGTCAG-CCAATAACACGGACCGATAGTGCACCCAATGGAGCATTTAGGAC 59 ||||||||||||| | || ||||||||||||||| ||||| ||||||||||||||||||| Sbjct 22 ATGTCATTGAGTCGGTCC-ATAACACGGACCGATGGTGCATCCAATGGAGCATTTAGGAC 80 Query 60 TTTTGGTCTCTACTGGTGCTACCATTGTGATCGTATGGTCAGAATTGCATCCTCTAACCC 119 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 81 TTTTGGTCTCTACTGGTGCTACCATTGTAATCGTATGGTCAGAATTGCATCCTCTAACCC 140 Query 120 ATCAGAGATCGCCTGTCCTCGATGTTTGAGGCAATTTGTCGTTGAGATTGAAACGAGACA 179 ||| |||||||| || |||||||| ||||| ||||||||||| ||||||||||| | | Sbjct 141 ATCTGAGATCGCGTGCCCTCGATGCTTGAGACAATTTGTCGTCGAGATTGAAAC-A-A-G 197 Query 180 ACGGCCTCGGTTTACTTTCAACCATGCTACTCCGCCTTTTGATGCTTCTCCTGAGGCTCG 239 |||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||| Sbjct 198 ACGGCCTCGGTTTACTCTCAATCATGCTGCTCCGCCTTTTGATGCTTCTCCTGAGGCTCG 257 Query 240 TCTTCTCGAAGCTCTCTCGCTCATGTTTGAGCCTGCAACCATAGGTAGGTTTGGTGCAGA 299 ||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||| Sbjct 258 TCTTCTCGAAGCTCTATCGCTCATGTTTGAGCCTGCAATTATAGGTGGGTTTGGTGCAGA 317 Query 300 CCCATTTCTTAGGGCAAGATCCAGAAACATCTTGGAACCTGAATCAAGACCCCGACCGCA 359 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 318 CCCATTTCTTAGGGCAAGATCCAGAAACATCTTGGAACCTGAATCAAGACCCCGACCACA 377 Query 360 ACATCGAAGACGACACAGCCTTGACAATGTTAACAATGGTGGTTTACCTCTACCAAGAAG 419 ||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 378 ACATCGACGACGCCACAGCCTTGACAATGTTAACAATGGTGGTTTGCCTCTACCAAGAAG 437 Query 420 AACATATGTTATTCTCCGGCCCAATAATCCGACTAGTCCACTCGGAAACATAATTGCGCC 479 | |||| || |||||||| |||||||||| |||||| |||||||||||||||| |||| Sbjct 438 AGCATACGTAATTCTCCGACCCAATAATCGGACTAGAGAACTCGGAAACATAATTCCGCC 497 Query 480 ACCAAATCAAGCACCACCAC-GGCATGTGAACTCACATGATTACTTTACTGGAGCATCAA 538 |||||||||||||||||| | |||||||||||||| | |||| |||||| ||||||||| Sbjct 498 ACCAAATCAAGCACCACC-CTGGCATGTGAACTCAAACGATTTCTTTACCGGAGCATCAG 556 Query 539 GCTTAGAGCAGCTGATTGAACAACTAACACAAGACGATAGGCCTGGACCACCACCTGCGT 598 |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| | Sbjct 557 GCTTAGAGCAGCTGATTGAACAACTAACACAAGATGATAGGCCTGGACCACTGCCTGCAT 616 Query 599 CAGAACCCACCATTAATTCCCTACCATCTGTGAAAATAACACCACAACATCTAACTAACG 658 ||||||| | |||| || | |||||||||||||| ||||||| |||||||||||| |||| Sbjct 617 CAGAACCTATCATTGATGCGCTACCATCTGTGAAGATAACACAACAACATCTAACCAACG 676 Query 659 ACATGTCCCAATGCACAGTGTGCATGGAAGAATTCATTGTTGGTGGGGACGCAACGGAAT 718 || || ||||||||||||||||||||||||||||||||||||||||||| ||||| |||| Sbjct 677 ACTTGACCCAATGCACAGTGTGCATGGAAGAATTCATTGTTGGTGGGGATGCAACAGAAT 736 Query 719 TACCATGTAAACATATTTACCATAAAGATTGTATAGTCCCGTGGCTTAGGCTTAACAATT 778 |||| |||||||||||||||||||||||||||||| |||||||||| |||||| |||||| Sbjct 737 TACCGTGTAAACATATTTACCATAAAGATTGTATAATCCCGTGGCTCAGGCTTCACAATT 796 Query 779 CTTGCCCTATCTGCCGCCGTGACCTGCCACTTGTCAACACCGTTGCTGAATCTCGAGAAA 838 ||||||||||||| ||| |||||||||||| |||||||||||||||||| |||||||||| Sbjct 797 CTTGCCCTATCTGTCGCAGTGACCTGCCACCTGTCAACACCGTTGCTGATTCTCGAGAAA 856 Query 839 GGAGCAATCCTATTAGACAAGACATGCCTGAAAGAAGGCGTCCAAGGTGGATGCAACTCG 898 |||||||||||| |||||||||||| |||||||||||||||||||||||||| || || | Sbjct 857 GGAGCAATCCTACTAGACAAGACATACCTGAAAGAAGGCGTCCAAGGTGGATACAGCTTG 916 Query 899 GTAACATTTGGCCATTTAGAGCAAGATACCAAAGGGTTAGTCCAGAAGAAACAGCAAACC 958 | ||||||||||| ||||||||| |||||||||| |||||||||||||||||| |||||| Sbjct 917 GGAACATTTGGCCCTTTAGAGCACGATACCAAAGAGTTAGTCCAGAAGAAACAACAAACC 976 Query 959 AGAATCCTCGA-GATAAC-AGGAGCTA 983 ||||||||||| | || | |||||||| Sbjct 977 AGAATCCTCGAAG-TA-CTAGGAGCTA 1001 > Ahg495284 jgi|Araly1|495284|fgenesh2_kg.8__1100__AT5G52140.1 Length=884 Score = 54.7 bits (29), Expect = 1e-06 Identities = 29/29 (100%), Gaps = 0/29 (0%) Strand=Plus/Plus Query 721 CCATGTAAACATATTTACCATAAAGATTG 749 ||||||||||||||||||||||||||||| Sbjct 751 CCATGTAAACATATTTACCATAAAGATTG 779 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36559877403 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5