BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G60390.1
Length=2092
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475291 jgi|Araly1|475291|fgenesh2_kg.2__421__AT1G60390.1 3081 0.0
Ahg472637 jgi|Araly1|472637|fgenesh2_kg.1__2591__AT1G23760.1 292 5e-78
> Ahg475291 jgi|Araly1|475291|fgenesh2_kg.2__421__AT1G60390.1
Length=2070
Score = 3081 bits (1668), Expect = 0.0
Identities = 1952/2088 (93%), Gaps = 23/2088 (1%)
Strand=Plus/Plus
Query 1 ATGAAATCATAGTGAAAtctcattactctctcttcatcttatttcttcttctcaaccaac 60
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 ATGAAATCATAGTGAAGTCTCATTACTCTCTCTTCATCTTATTTCTCCTTCTCAACCAAC 60
Query 61 aaatctctctcaCCAAGAAGATGAACAATATTGAAGCAACTCTATTCCTCTGCTTCTTCT 120
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAATCTCTCTCAACAAGAAGATGAACAATATTGAAGCAACTCTATTCCTCTGCTTCTTCT 120
Query 121 GCATCTTCTCATCTTCTAATGTGCATTTCGCCGGAGCTAAACAAACCGCCGGCAACATCA 180
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
Sbjct 121 TCATCTTCTCATCTTCTCATGTGCATTTCGCCGGAGCTAAGCAAACCGCCGGCAACATTA 180
Query 181 CGCCATCGGAGAATCCATTCACACCAAAAGCTTCTTTGATTCGTTATTGGAACAATCACA 240
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CGGCGTCGGAGAATCCATTCACACCAAAAGCTTCTTTGATTCGTTATTGGAACAATCACA 240
Query 241 TCAATGGCGATTCACCAAAACCTTCTTTTTTCCTCTCAAAGGCCTCTCCTCTAACCGCCG 300
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||
Sbjct 241 TCAATGGCGATTCACCAAAACCTTCTTTTTTCCTCTCAAAAGCCTCTCCTTTAACGGCCG 300
Query 301 TGGACTCCACGCGTTTCGCCTCACTCGCTTCTAATCACGCGCTTAACACGCATCACTCTG 360
||||||||||||| ||||||||||||||||||| ||||| |||| |||||| |||||| |
Sbjct 301 TGGACTCCACGCGGTTCGCCTCACTCGCTTCTACTCACGTGCTTCACACGCGTCACTCCG 360
Query 361 ATTTCTGCTCCGCCGCGAAACTCTTCTGCTTCCCTGAGCTCGCC---GCTCATTCCCTGG 417
|||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
Sbjct 361 ATTTCTGCTCCGCCGCGAAACTCTTCTGCTTCCCTGAGCTCGCCAACGCTCATTCTGTCG 420
Query 418 AAAAACACGGCGATGACGTCAACTTCGCCGCTTACAGCGGCAAGAACTTCACAAACTACG 477
| |||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 421 ATAAACACGGCGATGATGTCACCTTCGCCGCTTACAGCGGCAAGAACTTCACAAATTACG 480
Query 478 GCTCCGACCGTCTCTCCGGAGCAGACTCATTCAAAAACTATTCCGGCGGTGACAACATCG 537
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 481 GCTCCGACCGTCTCTCCGGAGCTGACTCATTCAAAAACTATTCCGGCGGTGATAACATCG 540
Query 538 CCGTAGACTCATTCCGACGTTACAGCCGAAACTCCGCCGGACACGACGATGGATTTACAA 597
|||| ||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 541 CCGTCGACTCGTTCCGACGTTACAGCCGTAACTCTGCCGGACACGACGATGGATTTACAA 600
Query 598 ATTACGCCGGAGAAGTAAACGTAGCTGACCAAAGCTTCACAACTTACGCCACCGGAACAA 657
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 601 ATTACGCCGGAGAAGTAAACGTAGCTGACCAAAGCTTCACAACTTACGCCACCGGAACCA 660
Query 658 CAGGAGGCTCCGGCGAATTCACGAACTACAACACAGACGCAAACGAACCAAACGGAAGAT 717
| |||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 661 CCGGAGGCTCTGGCGAATTCACGAGTTACAACACAAACGCAAACGAACCAAACGGAAGAT 720
Query 718 TCACTTCTTACTCCGATAAAGCCAACGGAAGATCACAAACCTTCACTACCTACTCCGAGA 777
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 721 TCACTTCTTACTCCGATAAAGCCAACGGAAGATCACAGACCTTCACTACCTACTCCGATA 780
Query 778 ACGGCAACACCGGATATCAATCATTCACAAGCTACAGCAAAAACGGAAACGGAGCTCCGA 837
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 781 ACGGCAACACCGGAGATCAATCGTTCACAAGCTACAGCAAAAACGGAAACGGAGCTCCGA 840
Query 838 ATGAGTTCTCGGGTTACGGAACCGGGTCAAACGTAGTTAATACGGGTTTTACCAAATACG 897
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 841 ATGAGTTCTCGGGTTACGGAACCGGGTCAAACGTTGTTATTACGGGTTTTACCAAATACG 900
Query 898 GAGAATCCGCTAACGGAGCTAACGACAGTTTCACGAGCTACGGAGAAAACGGTAATGTTC 957
||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 901 GAGAAACCGCTAACGGAGCTAACGACAGTTTCACAAGCTACGGAGAAAACGGGAATGTTC 960
Query 958 CGGTTAACGAATTTAAAGGATACGGTGACGGAGGTAACGGCGCCGTTTATGGGTTTAAAA 1017
||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 961 CGGTTAATGACTTTAAAGGATACGGTGACGGAGGTAACGGCGCCGTTTATGGTTTTAAAA 1020
Query 1018 ATTACAGAGACCAATCAAACATCGGAGTTGATTCTTTCTCTTCTTACGCTAAAAACTCAA 1077
|||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1021 ATTACAGAGACCAATCCAACATCGGAGTTGACTCTTTCTCTTCCTACGCTAAAAACTCAA 1080
Query 1078 ACAACGAGAAGGTCAATTTCGTAAATTACGGTAAATCTTTTAACCTTGGCTCTGATAATT 1137
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1081 ACAACGAGAAGGTCAATTTCGTAAATTACGGTAAATCTTTTAACCTCGGCTCTGATAATT 1140
Query 1138 TCACCGGTTACGGCCAAGATAACGTCGGAGGTAACGTCAGCTTCAAAACTTACGGCCAAG 1197
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 1141 TCACCGGTTACGGCCAAGGTAACGTCGGAGGTAACGTCAGCTTTAAAACTTACGGCCAAG 1200
Query 1198 GACAGAGTTTTAAGGTTTACACTAAAGACGGCGTCGTTTTTGCGCGTTATTCTAATAATG 1257
|||||||||| ||||| || ||||||||||||||||||||||||| ||||||||||||||
Sbjct 1201 GACAGAGTTTCAAGGTGTATACTAAAGACGGCGTCGTTTTTGCGCATTATTCTAATAATG 1260
Query 1258 TGAGTTCTAATGGCAAAACGGTGAATAAGTGGGTTGAGGAGGGTAAATTCTTCAGAGAAG 1317
||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1261 TGAGTTCCAATGGCAAAACGGTGAATAAATGGGTTGAGGAGGGTAAATTCTTCAGAGAAT 1320
Query 1318 CGATGTTGAAAGAAGGGACTTTGATGCAAATGCCGGATATTAAAGATAAAATGCCTAAAA 1377
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1321 CGATGTTGAAGGAAGGGACTTTGATGCAACTGCCGGATATTAAAGATAAAATGCCTAAAA 1380
Query 1378 GGACATTTTTACCCCGAAACATAGTTAAGAATTTACCGTTTTCGTCATCT-ACGATCGGA 1436
|||| ||||| |||||||| |||||| |||||||||||||||||| ||| | |||||||
Sbjct 1381 GGACGTTTTTGCCCCGAAATATAGTTTCGAATTTACCGTTTTCGTCCTCTGA-GATCGGA 1439
Query 1437 GAGATTTGGAGGGTTTTTGGTGCCGGTGAGAATTCATCAATGGCGGGGATAATCTCGTCG 1496
||||| ||| |||||||||||||||| |||||||| || |||||||||||||||||||||
Sbjct 1440 GAGATCTGGGGGGTTTTTGGTGCCGGAGAGAATTCGTCGATGGCGGGGATAATCTCGTCG 1499
Query 1497 GCGGTTTCAGAGTGTGAGAGACCGGCGAGTCACGGTGAGACAAAGCGGTGTGTTGGATCA 1556
|||||||| ||||||||||||||||||||| | |||||||| |||||||| ||||||||
Sbjct 1500 GCGGTTTCCGAGTGTGAGAGACCGGCGAGTAAAGGTGAGACGAAGCGGTGCGTTGGATCG 1559
Query 1557 GCGGAGGATATGATAGATTTCGCTACGTCGGTGCTCGGACGCGGCGTAGTGGTGAGGACG 1616
||||||||||||||||||||||||||||||||||| |||||||| || |||||||| ||
Sbjct 1560 GCGGAGGATATGATAGATTTCGCTACGTCGGTGCTTGGACGCGGTGTTGTGGTGAGAACC 1619
Query 1617 ACGGAAAATGTTGTCGGGTCAAAGAAGAAGGTCGTCATTGGAAAAGTCAATGGAATCAAC 1676
||||| ||||| |||||||||||||||||| |||| || |||||||||||||||||||||
Sbjct 1620 ACGGAGAATGTCGTCGGGTCAAAGAAGAAGATCGTGATCGGAAAAGTCAATGGAATCAAC 1679
Query 1677 GGTGGAGATGTAACAAGAGCAGTTTCGTGTCACCAGAGTTTGTACCCGTATTTACTGTAT 1736
|||||| ||||||| ||||| |||||||||||||||||||| || || ||||||||||||
Sbjct 1680 GGTGGAAATGTAACGAGAGCTGTTTCGTGTCACCAGAGTTTATATCCTTATTTACTGTAT 1739
Query 1737 TATTGTCACTCGGTTCCTCGGGTACGTGTTTATGAAACGGATCTACTTGACCCGAAGAGT 1796
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 1740 TATTGTCACTCGGTTCCTCGGGTACGGGTTTATGAAGCGGATCTACTTGACCCGAAGAGT 1799
Query 1797 TTAGAGAAGATTAACCATGGTGTTGCCATCTGTCACATTGATACGTCAGCTTGGAGTCCG 1856
||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1800 TTAGAAAAGATTAACCATGGTGTTGCCATCTGTCATATTGACACGTCAGCTTGGAGTCCG 1859
Query 1857 AGTCATGGAGCGTTTTTGGCTTTAGGTTCTGGTCCGGGTCAGATTGAAGTTTGCCATTGG 1916
||||||||||| |||||||||||||| || |||||||||| |||||||||||||||||||
Sbjct 1860 AGTCATGGAGCATTTTTGGCTTTAGGCTCGGGTCCGGGTCGGATTGAAGTTTGCCATTGG 1919
Query 1917 ATCTTTGAGAATGATATGACGTGGAATATTATTGATTAAGGTTTAGGTCATTTTTGGCCT 1976
|||||||||||||||||||||||||||||||||||||||||||| | | || |
Sbjct 1920 ATCTTTGAGAATGATATGACGTGGAATATTATTGATTAAGGTTT---T--T----GGTCA 1970
Query 1977 TTTGTGGTACAtttttttttttAGTTTGAGATTTGCTTCATCCGGtttttttATT-TTCT 2035
||| | | |||||||||||| ||||||||||||||||| ||||||||| || ||||
Sbjct 1971 TTT-T--T---TTTTTTTTTTTAATTTGAGATTTGCTTCATG-GGTTTTTTTTTTCTTCT 2023
Query 2036 GCAAAATATGTCACTCTCTCCCATTTTGTTCATATATAATATGTTTGA 2083
|||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 2024 GCAAAAC-TGTCACTCTCTCCCATTTTGTTGATATATAATATGTTTGA 2070
> Ahg472637 jgi|Araly1|472637|fgenesh2_kg.1__2591__AT1G23760.1
Length=1990
Score = 292 bits (158), Expect = 5e-78
Identities = 857/1185 (72%), Gaps = 86/1185 (7%)
Strand=Plus/Plus
Query 794 TCAATCATTCACAAGCTACAGCAAAAACGGAAACGGAGCTCCGAATGAGTTCTCGGGTTA 853
|||||| ||||| || || |||||||||| |||||||||||||| |||||||| |||
Sbjct 747 TCAATCTTTCACCAGTTATGGCAAAAACGGTAACGGAGCTCCGAACGAGTTCTCTTCTTA 806
Query 854 CGGAACCGGGTCAAACG-TAGT-TAATACGGGTTTTAC-CAAA-TAC-G-GAGAATCCGC 907
||| | || |||| || | || | || ||| | |||| ||| | ||||| | |
Sbjct 807 CGGCGTCTCCTCTAACGTTA-TCGGAT-C-GGATTT-CTCAAACTACGGCGAGAA-CAG- 860
Query 908 TAACGGAGCTAACGACAGTTTC-ACGAGCTACGGAGAAAACGGTAATGTT-C-CGGTTAA 964
||||| ||| ||||||| |||| | | ||||||| | ||||||||||| | ||| ||
Sbjct 861 TAACGCAGCCAACGACACTTTCAAAG-GCTACGGTGGCGACGGTAATGTTCCTCGG--AA 917
Query 965 CGAA-TTTAAAGGATACGGTGACGGAGGTAACGGCGCCGTTTATGGGTT-TAAAAATTAC 1022
|| || ||| | ||||||| | || || | ||||||| | || | |||||
Sbjct 918 -TAACTTCAAAAGCTACGGTGCCTCTGGGAATGCCGCCGTTGACACATTCT-TGAATTAT 975
Query 1023 AGAGACCAA-TCAAACATCGGAGTTGATTC-TTTCTCTTCTTACGCTAAAAACTCAAACA 1080
||||| ||| | ||| | || | ||||| ||| | || || || || |||||||||
Sbjct 976 AGAGA-CAAGGCTAACGTTGGGGACGATTCGTTT-GCGTCGTATGCCAAGAACTCAAACT 1033
Query 1081 ACGAGAAGGTCAATTTCGTAAATTACGGTAAATCTTTTAA-CCTTGGCTCTG-ATAATTT 1138
|||||||||| | ||||| |||||||| |||||| |||| || || || | || ||||
Sbjct 1034 TCGAGAAGGTCGACTTCGTGAATTACGGCAAATCTATTAATCC-CGGTTCGGAATCATTT 1092
Query 1139 CACCGGTTACGGCCAAGATAAC-GTCGGAGGTAACGTCAGCTTCAAAAC-T-TACGGCCA 1195
|||||||| || ||| | | | ||| || | | |||||||| | ||| |
Sbjct 1093 -ACCGGTTATGGTAAAG-GAGCTGAGGGAAACAAAATTGGTTTCAAAACGTATAC--TC- 1147
Query 1196 AGGA--CAGAGTTTTAAGGTTTACACTAAAGA-CGGCGTCGTTTTTGCGCGTTATTCTAA 1252
|| | || | || |||| ||| | ||| | ||| |||| ||| ||| | | |||
Sbjct 1148 AGAACTCA-ACCTTCAAGGACTACGCGAAA-ACCGGAGTCGAATTT--GCG-AAATATAA 1202
Query 1253 T-A-ATGTGAG-TTC--TAATGGCAAAACGGTGAATAAGTGGGTTGAGGAGGGTAAATTC 1307
| | | || || || | ||||||||| |||||||||||||| ||| || || |||
Sbjct 1203 TCAGA-GT-AGACTCGGTGGTGGCAAAACTGTGAATAAGTGGGTGGAGCCTGGCAAGTTC 1260
Query 1308 TTCAGAGAAGCGATG-TTGAAAGAAGGGACTTTGATGCAAATGCCGGATATTAAAGATAA 1366
|| |||||| || || || |||||| | | ||||| ||||| || |||||||||||
Sbjct 1261 TTTAGAGAATCGCTGCTT-AAAGAAAGTTCATTGATTTGGATGCCTGACATTAAAGATAA 1319
Query 1367 AATGCCTAAAAGGACATTTTTACCCCGAAACATAGT-TAAGAATTTACCGTTTTCGTCAT 1425
|||||| |||||| | ||| | || || ||||| || | ||| ||||||||||| |||
Sbjct 1320 AATGCCGAAAAGGTCGTTTCTGCCTCGTAACATTGTCT-CGAAACTACCGTTTTCGACAT 1378
Query 1426 CTACGATCG-GAGAGATTTGGAGGGTTTTTGGTGC-CGGTGAGAATTC-ATCAATGGCGG 1482
| | |||| | || || | | || || || | || || || | ||||||| |
Sbjct 1379 CAAAAATCGCG-GAAATCAAGCGTGTCTTCCACGCTAAG-GATAACTCGA-CAATGGCAG 1435
Query 1483 GGATAA-T-CTCGTCGGCGGTTTCAGAGTGTGAGAGACCGGCGAGTC-A-CGGTGAGAC- 1537
|||||| | || | || || |||| ||||||||| || ||| | | || |||||
Sbjct 1436 GGATAATTACT-G-ATGCCGTAACAGAATGTGAGAGATCGCCGA--CAATTGGCGAGACT 1491
Query 1538 AAAGCGGTGTGTTGGATCAGCGGAGGATATGATAGATTTCGCTACGTCGGTGCTCGGACG 1597
||| | ||||| |||||||||||||||||||| |||||||| || || ||||| || ||
Sbjct 1492 AAA-AGATGTGTCGGATCAGCGGAGGATATGATCGATTTCGCGACATCTGTGCTTGGTCG 1550
Query 1598 CGGCGTAGTGGTGAGGACGACGGAAAATGTTGTCGGGTCAAAG-AAGAAGGTCGTCATTG 1656
||| || | |||| || || | ||| | ||| |||||| || || ||| | || |
Sbjct 1551 AAACGTGGTACTCCGGACTACAGAGAGTGTAGCCGGATCAAAGCAA-AAAGTCATGATCG 1609
Query 1657 GAAAAGTCAATGGAATCAACGGTGG-AGATGTAAC-AAGAGCAGTTTCGTGTCACCAGAG 1714
|||||||||| |||||||||||||| ||| || || || | |||| || |||||||| ||
Sbjct 1610 GAAAAGTCAAAGGAATCAACGGTGGAAGA-GTGACGAA-ATCAGTGTCATGTCACCAAAG 1667
Query 1715 TTTGTACCCGTATTTACTGTATTATTGTCACTCGGTTCCTCGGGTACGTGTTTATGAAAC 1774
||||||||| || ||||| || || |||||||| || ||| || || | || || |
Sbjct 1668 TTTGTACCCTTACTTACTCTACTACTGTCACTCTGTGCCTAAAGTTCGAATATACGAGTC 1727
Query 1775 GGATCTACTT-GA-CCCGAAGAGTTTAGAGAAGATTAACCATGGTGTTGCCATCTGTCAC 1832
||||| || || ||| |||||| || ||||| ||||||||| |||| || ||||||
Sbjct 1728 AGATCT-TTTGGATCCC-AAGAGTAAAGCCAAGATCAACCATGGTATTGCTATATGTCAC 1785
Query 1833 ATTGATACGTCAGCTTGGAGTCCGAGTCATGGAGCGTT--TTTGGCTTTAGGTTCTGGTC 1890
|| || || ||||||||| || ||| |||||||| || | | || || ||| | || |
Sbjct 1786 ATGGACACATCAGCTTGGGGTGCGAACCATGGAGCCTTCATGTCGC-TTGGGTCCCGG-C 1843
Query 1891 CGGGTCAGATTGAAGTTTGCCATTGGATCTTTGAGAATGATATGA 1935
|||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1844 CGGGTCAGATCGAGGTTTGCCATTGGATCTTTGAGAATGATATGA 1888
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78694446170
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5