BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G60400.1 Length=1212 Score E Sequences producing significant alignments: (Bits) Value Ahg925023 jgi|Araly1|925023|scaffold_200584.1 1260 0.0 Ahg907391 jgi|Araly1|907391|Al_scaffold_0002_472 536 1e-151 > Ahg925023 jgi|Araly1|925023|scaffold_200584.1 Length=1255 Score = 1260 bits (682), Expect = 0.0 Identities = 1043/1215 (86%), Gaps = 34/1215 (3%) Strand=Plus/Plus Query 18 CAAAAGC-ATAGGCTCGGGGATAGATAGGTTAAGCGCTTTACCAGAGCATTTGTTGTGTC 76 ||||| | || ||||||||||||||||||||||||| ||||||||||||||||| ||||| Sbjct 34 CAAAACCAAT-GGCTCGGGGATAGATAGGTTAAGCGATTTACCAGAGCATTTGTCGTGTC 92 Query 77 GTATACTCTCTGAACTCTCCACCAAGGATTCGGTTCGCACGAGTGTTTTGTCTAAGCATT 136 ||||||||||| | |||||||||||||| |||||||| ||||| |||||||||||||||| Sbjct 93 GTATACTCTCTCACCTCTCCACCAAGGACTCGGTTCGTACGAGCGTTTTGTCTAAGCATT 152 Query 137 GGAGAAATCTTTGGTTACATGTTCCTGTTTTGGAATTGGAA-ACCAGTGATTTTCCAGAT 195 ||||||| ||||||||||||||||||| ||||| ||| ||| |||| ||||||||||||| Sbjct 153 GGAGAAACCTTTGGTTACATGTTCCTGCTTTGG-ATTTGAATACCATTGATTTTCCAGAT 211 Query 196 AATCTGGTCTTTAGGGAGTTCATTGATAGATTTGTCGGATTTGACAAAGAGATAGACTTA 255 ||||| ||||||| ||||||||||||||||||||||| ||||||||||||| |||||||| Sbjct 212 AATCTCGTCTTTAAGGAGTTCATTGATAGATTTGTCGAATTTGACAAAGAGTTAGACTTA 271 Query 256 AAGAGTTTCGATATATTTTATGATGTT-A--ATGTCCTCTGGTATGATGATTTTCTGTGG 312 ||||| ||||| ||||||||||||||| | ||| || || | |||||| ||||||||| Sbjct 272 AAGAGATTCGAGATATTTTATGATGTTAATCATGACCACTCTTTTGATGAGTTTCTGTGG 331 Query 313 ATGATCGATGATGTGGTTAAGCGTAGAGTTTGT-GATCTAATGGTTACCAATAACC-CGT 370 ||||||||||||||||||||||||||||||||| | | ||| |||| ||||||| | | Sbjct 332 ATGATCGATGATGTGGTTAAGCGTAGAGTTTGTCG-TGTAACAGTTATCAATAACGTC-T 389 Query 371 ATGTTGTTAATGAAAAGTTAGTTAAAATGCCTATATCCCTTTATTCATGTGCAACATTGG 430 |||||||| |||||| |||||||| |||||| |||| || ||||||||||||||| ||| Sbjct 390 ATGTTGTTGATGAAACGTTAGTTACCATGCCTCTATCGCTGTATTCATGTGCAACACTGG 449 Query 431 TGAATTTAAACCTCTCTTTTGTTGCCATGAATAATCTACCGTCAGAATCGGTTTGTTTAC 490 ||||||| | |||||| ||||||||||||||||| | || |||||||| ||||| ||||| Sbjct 450 TGAATTTGACCCTCTCCTTTGTTGCCATGAATAAGCCACAGTCAGAATTGGTTTCTTTAC 509 Query 491 CTCGTGTCAAGACCTTATATTTACATGGGGTTAAACTTGATGGCGAT--TCCA-TTCTGG 547 || |||| |||||| ||||| || ||| || ||| ||||||| ||| | || |||| | Sbjct 510 CTTGTGTAAAGACCATATATCTAGATGCAGTGAAATTTGATGGTGATGATTCAATTCTAG 569 Query 548 GGACTCTCGTATCAAGTTGTTCGGTTCTCGAAGATTTAACCGTGGTTACGCATCCTGGTG 607 |||||||||||| |||||||||| || || |||||||| ||| || ||||||||| | Sbjct 570 AGACTCTCGTATCGGGTTGTTCGGTGCTTGACGATTTAACGGTGATTGCGCATCCTGAAG 629 Query 608 ACTATGAG-AAGGTCGTATGTTTTCGCTCTCAATCAGTAAAAAGCTTCACAATAGAGTCT 666 | |||| ||| | |||||| ||||||||| |||| |||||||||||||| |||||||| Sbjct 630 ATTATGCCCAAGTT-GTATGTGTTCGCTCTCGATCATTAAAAAGCTTCACACTAGAGTCT 688 Query 667 CAGTGTGAGTATAAAGACCCCAATGTTG-AGATTGATTGTCCTAGGCTTGAGTATATGTG 725 ||| || ||||| ||||||||||||||| | ||||| ||||| ||||||||||||||| | Sbjct 689 CAGAGTCAGTATCAAGACCCCAATGTTGTA-ATTGACTGTCCAAGGCTTGAGTATATGAG 747 Query 726 TATTAGGGAATACCAATCTGAAAGCTTTGTAGTACACAGTATTGGTCCCTATGCAAAGGT 785 | |||||| ||||||| ||| |||| |||||||||| ||||||||||| ||||||||||| Sbjct 748 TGTTAGGGGATACCAACCTGCAAGCATTGTAGTACATAGTATTGGTCCTTATGCAAAGGT 807 Query 786 AGACGTCGATATTTTCTTTGAAGTTGAGTATGAAGATCCACTGGCGAT-ATCTATGATCA 844 | || ||||| | | ||||||||||| ||||||||||||| ||| || | |||||||| Sbjct 808 AAACATCGATGTGATGTTTGAAGTTGACTATGAAGATCCACCGGCAATCA-CTATGATCC 866 Query 845 GAAATTTTCTCACCGGGATATCCAAAGTCCGTGAAATGACCATCTCAAGTCGAACGTTAG 904 | | ||||||||||| ||||||||||| || ||||||||||||||||| |||||| |||| Sbjct 867 GCAGTTTTCTCACCGCGATATCCAAAGCCCATGAAATGACCATCTCAACTCGAACTTTAG 926 Query 905 AGGTCATCCGT-GGCTATCACTCCATGGTGAAAGCA-TTACCTCAA-TTTTCCAACTTGT 961 || ||||| | ||||| || | |||||||| | | || ||| || ||||||||||||| Sbjct 927 AGCTCATC-GACGGCTACCATTTGATGGTGAATG-AGTTGCCT-AAGTTTTCCAACTTGT 983 Query 962 CTAGCTTGGATGCTTTGTTAGTCGAA-TCATATTGGGAAC-TCTTACCAG-TCTTTCTTG 1018 || || | ||||||| |||| | || || | |||||||| | ||||||| | ||||||| Sbjct 984 CTCGCCTAAATGCTTTCTTAGAC-AAGTCTTTTTGGGAACGT-TTACCAGGT-TTTCTTG 1040 Query 1019 GTTGTTGCATCAATCTAAATTCACTCGTCGTGGAACTTGATGG-CCTTTCCGAGATAGAG 1077 |||||||||||||||| |||||| ||||| |||||||||| || || | | ||||||||| Sbjct 1041 GTTGTTGCATCAATCTGAATTCATTCGTCCTGGAACTTGACGGTCCAT-CAGAGATAGAG 1099 Query 1078 GAGTTTAAAGTTTCACCACTGCTTCAAGATTCCCTATCTGCTCGTGGGTTTGTTCAGCAG 1137 ||| |||||||||||||||||||||||||| | ||||| ||||||||||||||||||| | Sbjct 1100 GAGATTAAAGTTTCACCACTGCTTCAAGATGCTCTATCCGCTCGTGGGTTTGTTCAGCTG 1159 Query 1138 AAGACACCAGTTTCAGTCACAAAGACATCAAGTGAAAGGAAAATAGCAGCATATTTTGTG 1197 ||||||||| |||||||||||| ||| |||||||| |||||| ||||||||||||||||| Sbjct 1160 AAGACACCACTTTCAGTCACAAGGACGTCAAGTGAGAGGAAACTAGCAGCATATTTTGTG 1219 Query 1198 AAGAAAAGTGGCTAA 1212 ||||||||||||||| Sbjct 1220 AAGAAAAGTGGCTAA 1234 > Ahg907391 jgi|Araly1|907391|Al_scaffold_0002_472 Length=486 Score = 536 bits (290), Expect = 1e-151 Identities = 428/492 (87%), Gaps = 19/492 (4%) Strand=Plus/Plus Query 732 GGAATACCAATCTGAAAGCTTTGTAGTACACAGTATTGGTCCCTATGCAAAGGTAG-ACG 790 |||||||||| ||| |||| |||||||||| ||||||||||||||||||||||| | || Sbjct 3 GGAATACCAACCTGCAAGCATTGTAGTACATAGTATTGGTCCCTATGCAAAGGT-GAACA 61 Query 791 TCGATATTTTCTTTGAAGTTGAGTATGAAGATCCACTGGCGAT-ATCTATGATCAGAAAT 849 ||||| || | ||||||||||| ||||||||||||||||| || | |||||||| | | | Sbjct 62 TCGATGTTATGTTTGAAGTTGACTATGAAGATCCACTGGCAATCA-CTATGATCCGCAGT 120 Query 850 TTTCTCACCGGGATATCCAAAGTCCGTGAAATGACCATCTCAAGTCGAACGTTAGAGGTC 909 ||||||| || ||||||||||| |||||||||||||||||||| |||||| |||||| || Sbjct 121 TTTCTCATCGCGATATCCAAAGCCCGTGAAATGACCATCTCAACTCGAACTTTAGAGCTC 180 Query 910 ATCCG-TGGCTATCACTCCATGGTGAAAGCA-TTACCTCAA-TTTTCCAACTTGTCTAGC 966 || || ||||| || | | |||||||| | || ||| || ||||||||||||||| || Sbjct 181 AT-CGACGGCTACCATTTGAAGGTGAAAG-AGTTGCCT-AAGTTTTCCAACTTGTCTCGC 237 Query 967 TTGGATGCTTTGTTAGTCGAA-TCATATTGGGAAC-TCTTACCA-GTCTTTCTTGGTTGT 1023 | ||||| ||||||| | || || | |||||| | | |||||| || |||||||||||| Sbjct 238 CTAGATGCCTTGTTAGAC-AAGTCTTTTTGGGATCGT-TTACCAGGT-TTTCTTGGTTGT 294 Query 1024 TGCATCAATCTAAATTCACTCGTCGTGGAACTTGATGGCCTTTCCGAGATAGAGGAGTTT 1083 ||||||||||| |||||| ||||| |||||||||| |||| ||| |||||||||||| || Sbjct 295 TGCATCAATCTGAATTCATTCGTCCTGGAACTTGACGGCCATTCAGAGATAGAGGAGATT 354 Query 1084 AAAGTTTCACCACTGCTTCAAGATTCCCTATCTGCTCGTGGGTTTGTTCAGCAGAAGACA 1143 |||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||| Sbjct 355 AAAGTTTCACCACTGCTTCAAGATGCCCTATCCGCTCGTGGGTTTGTTCAGCTGAAGACA 414 Query 1144 CCAGTTTCAGTCACAAAGACATCAAGTGAAA-G-G-AAAATAGCAGCATATTTTGTGAAG 1200 ||| ||||||||||||||||||||||||||| | | |||||||||||||||||||||||| Sbjct 415 CCACTTTCAGTCACAAAGACATCAAGTGAAATGAGGAAAATAGCAGCATATTTTGTGAAG 474 Query 1201 AAAAGTGGCTAA 1212 |||||||||||| Sbjct 475 AAAAGTGGCTAA 486 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45251902479 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5