BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G60400.1
Length=1212
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925023 jgi|Araly1|925023|scaffold_200584.1 1260 0.0
Ahg907391 jgi|Araly1|907391|Al_scaffold_0002_472 536 1e-151
> Ahg925023 jgi|Araly1|925023|scaffold_200584.1
Length=1255
Score = 1260 bits (682), Expect = 0.0
Identities = 1043/1215 (86%), Gaps = 34/1215 (3%)
Strand=Plus/Plus
Query 18 CAAAAGC-ATAGGCTCGGGGATAGATAGGTTAAGCGCTTTACCAGAGCATTTGTTGTGTC 76
||||| | || ||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 34 CAAAACCAAT-GGCTCGGGGATAGATAGGTTAAGCGATTTACCAGAGCATTTGTCGTGTC 92
Query 77 GTATACTCTCTGAACTCTCCACCAAGGATTCGGTTCGCACGAGTGTTTTGTCTAAGCATT 136
||||||||||| | |||||||||||||| |||||||| ||||| ||||||||||||||||
Sbjct 93 GTATACTCTCTCACCTCTCCACCAAGGACTCGGTTCGTACGAGCGTTTTGTCTAAGCATT 152
Query 137 GGAGAAATCTTTGGTTACATGTTCCTGTTTTGGAATTGGAA-ACCAGTGATTTTCCAGAT 195
||||||| ||||||||||||||||||| ||||| ||| ||| |||| |||||||||||||
Sbjct 153 GGAGAAACCTTTGGTTACATGTTCCTGCTTTGG-ATTTGAATACCATTGATTTTCCAGAT 211
Query 196 AATCTGGTCTTTAGGGAGTTCATTGATAGATTTGTCGGATTTGACAAAGAGATAGACTTA 255
||||| ||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 212 AATCTCGTCTTTAAGGAGTTCATTGATAGATTTGTCGAATTTGACAAAGAGTTAGACTTA 271
Query 256 AAGAGTTTCGATATATTTTATGATGTT-A--ATGTCCTCTGGTATGATGATTTTCTGTGG 312
||||| ||||| ||||||||||||||| | ||| || || | |||||| |||||||||
Sbjct 272 AAGAGATTCGAGATATTTTATGATGTTAATCATGACCACTCTTTTGATGAGTTTCTGTGG 331
Query 313 ATGATCGATGATGTGGTTAAGCGTAGAGTTTGT-GATCTAATGGTTACCAATAACC-CGT 370
||||||||||||||||||||||||||||||||| | | ||| |||| ||||||| | |
Sbjct 332 ATGATCGATGATGTGGTTAAGCGTAGAGTTTGTCG-TGTAACAGTTATCAATAACGTC-T 389
Query 371 ATGTTGTTAATGAAAAGTTAGTTAAAATGCCTATATCCCTTTATTCATGTGCAACATTGG 430
|||||||| |||||| |||||||| |||||| |||| || ||||||||||||||| |||
Sbjct 390 ATGTTGTTGATGAAACGTTAGTTACCATGCCTCTATCGCTGTATTCATGTGCAACACTGG 449
Query 431 TGAATTTAAACCTCTCTTTTGTTGCCATGAATAATCTACCGTCAGAATCGGTTTGTTTAC 490
||||||| | |||||| ||||||||||||||||| | || |||||||| ||||| |||||
Sbjct 450 TGAATTTGACCCTCTCCTTTGTTGCCATGAATAAGCCACAGTCAGAATTGGTTTCTTTAC 509
Query 491 CTCGTGTCAAGACCTTATATTTACATGGGGTTAAACTTGATGGCGAT--TCCA-TTCTGG 547
|| |||| |||||| ||||| || ||| || ||| ||||||| ||| | || |||| |
Sbjct 510 CTTGTGTAAAGACCATATATCTAGATGCAGTGAAATTTGATGGTGATGATTCAATTCTAG 569
Query 548 GGACTCTCGTATCAAGTTGTTCGGTTCTCGAAGATTTAACCGTGGTTACGCATCCTGGTG 607
|||||||||||| |||||||||| || || |||||||| ||| || ||||||||| |
Sbjct 570 AGACTCTCGTATCGGGTTGTTCGGTGCTTGACGATTTAACGGTGATTGCGCATCCTGAAG 629
Query 608 ACTATGAG-AAGGTCGTATGTTTTCGCTCTCAATCAGTAAAAAGCTTCACAATAGAGTCT 666
| |||| ||| | |||||| ||||||||| |||| |||||||||||||| ||||||||
Sbjct 630 ATTATGCCCAAGTT-GTATGTGTTCGCTCTCGATCATTAAAAAGCTTCACACTAGAGTCT 688
Query 667 CAGTGTGAGTATAAAGACCCCAATGTTG-AGATTGATTGTCCTAGGCTTGAGTATATGTG 725
||| || ||||| ||||||||||||||| | ||||| ||||| ||||||||||||||| |
Sbjct 689 CAGAGTCAGTATCAAGACCCCAATGTTGTA-ATTGACTGTCCAAGGCTTGAGTATATGAG 747
Query 726 TATTAGGGAATACCAATCTGAAAGCTTTGTAGTACACAGTATTGGTCCCTATGCAAAGGT 785
| |||||| ||||||| ||| |||| |||||||||| ||||||||||| |||||||||||
Sbjct 748 TGTTAGGGGATACCAACCTGCAAGCATTGTAGTACATAGTATTGGTCCTTATGCAAAGGT 807
Query 786 AGACGTCGATATTTTCTTTGAAGTTGAGTATGAAGATCCACTGGCGAT-ATCTATGATCA 844
| || ||||| | | ||||||||||| ||||||||||||| ||| || | ||||||||
Sbjct 808 AAACATCGATGTGATGTTTGAAGTTGACTATGAAGATCCACCGGCAATCA-CTATGATCC 866
Query 845 GAAATTTTCTCACCGGGATATCCAAAGTCCGTGAAATGACCATCTCAAGTCGAACGTTAG 904
| | ||||||||||| ||||||||||| || ||||||||||||||||| |||||| ||||
Sbjct 867 GCAGTTTTCTCACCGCGATATCCAAAGCCCATGAAATGACCATCTCAACTCGAACTTTAG 926
Query 905 AGGTCATCCGT-GGCTATCACTCCATGGTGAAAGCA-TTACCTCAA-TTTTCCAACTTGT 961
|| ||||| | ||||| || | |||||||| | | || ||| || |||||||||||||
Sbjct 927 AGCTCATC-GACGGCTACCATTTGATGGTGAATG-AGTTGCCT-AAGTTTTCCAACTTGT 983
Query 962 CTAGCTTGGATGCTTTGTTAGTCGAA-TCATATTGGGAAC-TCTTACCAG-TCTTTCTTG 1018
|| || | ||||||| |||| | || || | |||||||| | ||||||| | |||||||
Sbjct 984 CTCGCCTAAATGCTTTCTTAGAC-AAGTCTTTTTGGGAACGT-TTACCAGGT-TTTCTTG 1040
Query 1019 GTTGTTGCATCAATCTAAATTCACTCGTCGTGGAACTTGATGG-CCTTTCCGAGATAGAG 1077
|||||||||||||||| |||||| ||||| |||||||||| || || | | |||||||||
Sbjct 1041 GTTGTTGCATCAATCTGAATTCATTCGTCCTGGAACTTGACGGTCCAT-CAGAGATAGAG 1099
Query 1078 GAGTTTAAAGTTTCACCACTGCTTCAAGATTCCCTATCTGCTCGTGGGTTTGTTCAGCAG 1137
||| |||||||||||||||||||||||||| | ||||| ||||||||||||||||||| |
Sbjct 1100 GAGATTAAAGTTTCACCACTGCTTCAAGATGCTCTATCCGCTCGTGGGTTTGTTCAGCTG 1159
Query 1138 AAGACACCAGTTTCAGTCACAAAGACATCAAGTGAAAGGAAAATAGCAGCATATTTTGTG 1197
||||||||| |||||||||||| ||| |||||||| |||||| |||||||||||||||||
Sbjct 1160 AAGACACCACTTTCAGTCACAAGGACGTCAAGTGAGAGGAAACTAGCAGCATATTTTGTG 1219
Query 1198 AAGAAAAGTGGCTAA 1212
|||||||||||||||
Sbjct 1220 AAGAAAAGTGGCTAA 1234
> Ahg907391 jgi|Araly1|907391|Al_scaffold_0002_472
Length=486
Score = 536 bits (290), Expect = 1e-151
Identities = 428/492 (87%), Gaps = 19/492 (4%)
Strand=Plus/Plus
Query 732 GGAATACCAATCTGAAAGCTTTGTAGTACACAGTATTGGTCCCTATGCAAAGGTAG-ACG 790
|||||||||| ||| |||| |||||||||| ||||||||||||||||||||||| | ||
Sbjct 3 GGAATACCAACCTGCAAGCATTGTAGTACATAGTATTGGTCCCTATGCAAAGGT-GAACA 61
Query 791 TCGATATTTTCTTTGAAGTTGAGTATGAAGATCCACTGGCGAT-ATCTATGATCAGAAAT 849
||||| || | ||||||||||| ||||||||||||||||| || | |||||||| | | |
Sbjct 62 TCGATGTTATGTTTGAAGTTGACTATGAAGATCCACTGGCAATCA-CTATGATCCGCAGT 120
Query 850 TTTCTCACCGGGATATCCAAAGTCCGTGAAATGACCATCTCAAGTCGAACGTTAGAGGTC 909
||||||| || ||||||||||| |||||||||||||||||||| |||||| |||||| ||
Sbjct 121 TTTCTCATCGCGATATCCAAAGCCCGTGAAATGACCATCTCAACTCGAACTTTAGAGCTC 180
Query 910 ATCCG-TGGCTATCACTCCATGGTGAAAGCA-TTACCTCAA-TTTTCCAACTTGTCTAGC 966
|| || ||||| || | | |||||||| | || ||| || ||||||||||||||| ||
Sbjct 181 AT-CGACGGCTACCATTTGAAGGTGAAAG-AGTTGCCT-AAGTTTTCCAACTTGTCTCGC 237
Query 967 TTGGATGCTTTGTTAGTCGAA-TCATATTGGGAAC-TCTTACCA-GTCTTTCTTGGTTGT 1023
| ||||| ||||||| | || || | |||||| | | |||||| || ||||||||||||
Sbjct 238 CTAGATGCCTTGTTAGAC-AAGTCTTTTTGGGATCGT-TTACCAGGT-TTTCTTGGTTGT 294
Query 1024 TGCATCAATCTAAATTCACTCGTCGTGGAACTTGATGGCCTTTCCGAGATAGAGGAGTTT 1083
||||||||||| |||||| ||||| |||||||||| |||| ||| |||||||||||| ||
Sbjct 295 TGCATCAATCTGAATTCATTCGTCCTGGAACTTGACGGCCATTCAGAGATAGAGGAGATT 354
Query 1084 AAAGTTTCACCACTGCTTCAAGATTCCCTATCTGCTCGTGGGTTTGTTCAGCAGAAGACA 1143
|||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||
Sbjct 355 AAAGTTTCACCACTGCTTCAAGATGCCCTATCCGCTCGTGGGTTTGTTCAGCTGAAGACA 414
Query 1144 CCAGTTTCAGTCACAAAGACATCAAGTGAAA-G-G-AAAATAGCAGCATATTTTGTGAAG 1200
||| ||||||||||||||||||||||||||| | | ||||||||||||||||||||||||
Sbjct 415 CCACTTTCAGTCACAAAGACATCAAGTGAAATGAGGAAAATAGCAGCATATTTTGTGAAG 474
Query 1201 AAAAGTGGCTAA 1212
||||||||||||
Sbjct 475 AAAAGTGGCTAA 486
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45251902479
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5