BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G60410.1
Length=1460
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475290 jgi|Araly1|475290|fgenesh2_kg.2__420__AT1G60410.1 1851 0.0
> Ahg475290 jgi|Araly1|475290|fgenesh2_kg.2__420__AT1G60410.1
Length=1380
Score = 1851 bits (1002), Expect = 0.0
Identities = 1201/1299 (92%), Gaps = 6/1299 (0%)
Strand=Plus/Plus
Query 1 AAGGTTCTTCTTCTTCCTCTCTATCTCTACTAGGGTTTCCGGGAGAAGTCATGGCTAGAA 60
||||||||||||||||||| ||||||| |||||||||||| | |||||||||||||||||
Sbjct 1 AAGGTTCTTCTTCTTCCTCCCTATCTCGACTAGGGTTTCCAGTAGAAGTCATGGCTAGAA 60
Query 61 CCGAAGTCTCAGGGAAAGATAGGTTAAGCGATTTACCGTGTCATTTGCTATGTCGCATCC 120
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||
Sbjct 61 CCGAAGTCTCAGGGAAAGATTGGTTAAGCGATTTACCATGTCATTTGCTATGTCGGATCC 120
Query 121 TCTCTAATCTCTCTACCAAGGAATCGGTTCGTACTAGCGTTTTGTCCCCTCGTTGGAGTA 180
||||||| ||||||||||||||||||||||| |||||| ||||||| | |||||||||||
Sbjct 121 TCTCTAAACTCTCTACCAAGGAATCGGTTCGCACTAGCATTTTGTCGCGTCGTTGGAGTA 180
Query 181 ATCTCTGGTCGCTTGTTTCTGTTTTGGATTTGGATTTCCAAGATTTTAAAGGTGAACACG 240
|||||||||| |||||||||||||||||||||||||| |||||||| ||||||| || |
Sbjct 181 ATCTCTGGTCACTTGTTTCTGTTTTGGATTTGGATTTTCAAGATTTCAAAGGTGTTCATG 240
Query 241 ACATGGGAGAATTCATAGATAGCTTTATGGAATATCACGAAGAGTTAGGCTTGAAGTTGA 300
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 241 ACATGGGAGAATTCATAGATAGCTTTATGGAATCTCACGAAGAGTTAGGTTTGAAGTTGA 300
Query 301 AGAGCTTCAATATGTTTTATGATGCTAATGAGCACTTGCAT-GAGCCATTTGTGAGGAGG 359
|||| |||||| ||||||||| || | |||||||||| ||| || |||||||||||||
Sbjct 301 AGAGATTCAATTTGTTTTATGCTGTTCATGAGCACTTTCATAAAG-TATTTGTGAGGAGG 359
Query 360 CTAAATAAAGTGGTTAGGCGTGGAGTTTGTGATCTGAATATTCAGAATATGGTGGATGTT 419
||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||
Sbjct 360 TTAAATAAAGTGGTTAAGCTTGGAGTTTGTGATCTGACTATTCAGAATATGGTGGATGTT 419
Query 420 GATGTAGCATTAGTTAGGATGCCTCCCTCGCTTTATTCATGTGCTACTTTAGTGAATTTG 479
|||| ||| |||||||||||||||| |||||| ||||||||||| ||||| |||||||||
Sbjct 420 GATGAAGCCTTAGTTAGGATGCCTCTCTCGCTCTATTCATGTGCGACTTTGGTGAATTTG 479
Query 480 ATTCTCTACTGTGTTGTCTTTGATCATCCAAGATCAAAATCGGTTTCTTTACCTAGTGTG 539
||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 480 ATTGTCTACTGTGTTGTCTTTGATCATCCAGGATCAAAATCGGTTTCTTTACCTAGTGTC 539
Query 540 AAGAAAATGTATTTTGAGGGGGTCAAGTTTGATGGTGATTCTGTTCTGGAGACTCTCATA 599
|||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||
Sbjct 540 AAGAAAATGTATTTTGAGGGTGTCAAGTTTGATGGCCATTCCGTTCTGGAGACTCTCATA 599
Query 600 TCGCA-TAGTCCGGTTCTTGAGGAGTTAACCGTGATTCCGCATCCGGAGGATTATTTGGA 658
||| | | |||||||||||||||||||||| || ||||||||||||||||||||| | ||
Sbjct 600 TCG-AGTTGTCCGGTTCTTGAGGAGTTAACTGTTATTCCGCATCCGGAGGATTATCTCGA 658
Query 659 AGTCATATGTGTTCGTTCTCAATCACTGGAGAGCTTTAGACTTGAGTCTAAGCGTTTTGA 718
||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 659 AGTCATACGTGTTCGTTCTCAATCATTGGAGAGCTTCAGACTTGAGTCTAAGCGTTTTGA 718
Query 719 GTGTGACAATCCCAAAGTTGAAATCGATTCTCCAAGCCTTGAGTTTATGAGTATCTGTGA 778
||||||||||||||| |||||||||||| ||||||||||| ||||||||||||| | |||
Sbjct 719 GTGTGACAATCCCAATGTTGAAATCGATGCTCCAAGCCTTAAGTTTATGAGTATTTTTGA 778
Query 779 TAAGAAACCTGAAAGCCTTAAAATACATAGAATTGGTCCTTTTGCGGAGGTAACCGTTGA 838
||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 779 TAACAAACCTGAAAGCCTTAAAATACATAGAATTGGTCCCTTTGCAGAGGTAACCGTTGA 838
Query 839 TGTTGAGTTTGATGTTGAGGATGATGATCCATTGGAGATATCTAAGATACGTAAGTTTCT 898
||||||||||||||| ||| |||||||||||| ||||||| ||||| ||| ||| |||||
Sbjct 839 TGTTGAGTTTGATGTCGAGTATGATGATCCATCGGAGATAGCTAAGGTACATAATTTTCT 898
Query 899 CGTCGGGTTATCCACATTTCACGAACTGACCATCTCTGCTCGAACTCTAGAGTCCATCCA 958
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 899 CGTCGGGTTATCCTCATTTCACGAACTGACCATCTCTGCTCGAACTCTAGAGTCCATCGA 958
Query 959 TGACTACTCCAAGGTGGGACCATTGCCTCCATTCTCTAACTTGTTTGGCTTGGATGCTTC 1018
||| || |||||||||| ||||||||||||||| |||||||||| | |||||||||||||
Sbjct 959 TGAGTATTCCAAGGTGGAACCATTGCCTCCATTTTCTAACTTGTATCGCTTGGATGCTTC 1018
Query 1019 GTTAGTCGAATCTTCTTGGGAAGTTTTACCAGCCTTTCTTAGTTGCTGCATGAATCTAGA 1078
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 1019 GTTAGTCGAATCTTCTTGGGAAGTTTTACCAGCCTTTCTTGGTTGCTGCATAAATCTAGA 1078
Query 1079 TTCGCTCGTCATAGAACTTGACTGTGTTCCAGAGATGGAGGAGATTAAACTCTCACCAGT 1138
|||||| ||| ||||||||||| ||||| |||||||||||||||||||| ||||||||
Sbjct 1079 TTCGCTAGTCCTAGAACTTGACCACGTTCCTGAGATGGAGGAGATTAAACTTTCACCAGT 1138
Query 1139 GCCTCAATGTGTCTTATCCTCTCTCGACTTTCTTCAGTTGAAGGCACCATCGACACCAAG 1198
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1139 GCCTCAATGTGTCTTATCCTCTCTCGACTTTCTTCAGCTGAAGACACCATCGACACCAAG 1198
Query 1199 TAAAATGAAACTTGCGACATATTTTAGGAAGAAGTGTACA-CGCTTGACGAAAATGCTTT 1257
||||||||||||||| ||||||||||||||||| |||||| | |||||||||||||||||
Sbjct 1199 TAAAATGAAACTTGCAACATATTTTAGGAAGAATTGTACAAC-CTTGACGAAAATGCTTT 1257
Query 1258 TAAGTGGGCAGTAACATCATCAAGAAAATGAAAAGGATT 1296
||||||||| ||||||||||||||||||| ||||||||
Sbjct 1258 TAAGTGGGCGGTAACATCATCAAGAAAATCTAAAGGATT 1296
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54621411330
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5