BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G60420.1
Length=1992
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925020 jgi|Araly1|925020|scaffold_200581.1 2719 0.0
> Ahg925020 jgi|Araly1|925020|scaffold_200581.1
Length=1777
Score = 2719 bits (1472), Expect = 0.0
Identities = 1676/1777 (94%), Gaps = 4/1777 (0%)
Strand=Plus/Plus
Query 71 ATTCGATCTCCGTACAAACAATGGCCGAAACCTCGAAGCAAGTCAACGGCGACGATGCCC 130
||||||| ||||||||| | |||||||||||||||||| ||||||||| | |||| |||
Sbjct 1 ATTCGATTTCCGTACAAGCCATGGCCGAAACCTCGAAGGTAGTCAACGGTGGCGATTCCC 60
Query 131 AGGATCTTCACTCGCTTCTTTCTTCTCCGGCGAGGGATTTCCTCGTTCGTAATGACGGCG 190
|||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 61 TGGATCTTCACTCACTTCTCTCTTCTTCGGCGAGGGATTTCCTCGTTCGTAATGACGGCG 120
Query 191 AACAGGTGAAAGTTGACAGCTTGTTAGGGAAGAAGATTGGATTGTATTTTTCAGCTGCTT 250
||||||||||| ||||||||||| |||| ||||||||||| ||||||||||||||||| |
Sbjct 121 AACAGGTGAAAATTGACAGCTTGATAGGCAAGAAGATTGGGTTGTATTTTTCAGCTGCGT 180
Query 251 GGTGTGGACCGTGTCAGCGGTTTACTCCACAGCTGGTGGAAGTCTACAACGAGCTCTCTT 310
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 181 GGTGTGGACCGTGTCAGCGGTTTACTCCACAGCTGGTGGAAGTTTACAACGAACTCTCTT 240
Query 311 CGAAAGTTGGTTTTGAGATTGTGTTTGTGTCAGGTGATGAGGATGAAGAGTCATTTGGAG 370
|||||||||||||||||||||| |||||||| |||||||||||||| ||||| |||||||
Sbjct 241 CGAAAGTTGGTTTTGAGATTGTCTTTGTGTCGGGTGATGAGGATGAGGAGTCTTTTGGAG 300
Query 371 ATTATTTCAGAAAGATGCCCTGGCTCGCTGTTCCGTTTACTGATTCGGAAACCCGTGACC 430
|||||||||| |||||||||||||| |||||||||||||||||||| ||| |||||||||
Sbjct 301 ATTATTTCAGTAAGATGCCCTGGCTTGCTGTTCCGTTTACTGATTCTGAATCCCGTGACC 360
Query 431 GTTTGGATGAGTTGTTTAAGGTTAGGGGAATACCTAACCTAGTGATGGTTGATGATCATG 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GTTTGGATGAGTTGTTTAAGGTTAGGGGAATACCTAACCTAGTGATGGTTGATGATCATG 420
Query 491 GTAAACTTGTGAATGAGAATGGTGTTGGGGTCATACGAAGCTATGGAGCTGATGCTTATC 550
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 421 GTAAACTTGTGAATGAGAATGGGGTTGGGGTCATACGAAGCTATGGAGCTGATGCTTATC 480
Query 551 CTTTCACACCAGAGAAAATGAAGGAGATCAAAGAGGATGAAGATAGAGCTCGGAGAGGAC 610
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 481 CTTTCACACCGGAGAAAATGAAGGAGATCAAAGAGGACGAAGATAGAGCTCGGAGAGAAC 540
Query 611 AGACCTTAAGATCTGTCTTGGTGACTCCTTCACGAGACTTTGTGATTTCGCCTGACGGAA 670
||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 541 AGACCTTAAGATCCGTCTTGGTGACTCCTTCACGGGACTTTGTGATCTCGCCTGACGGAA 600
Query 671 ACAAGGTACCCGTATCAGAGCTTGAGGGAAAAACCATTGGCCTTCTCTTCTCTGTGGCCT 730
|||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 601 ACAAGGTACCTGTATCAGAGCTTGAGGGAAAAACCATTGGCCTTCTCTTCTCGGTCGCCT 660
Query 731 CTTACAGGAAATGCACAGAGCTTACTCCAAAGCTTGTTGAGTTTTATACGAAGCTGAAGG 790
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 661 CTTACAGGAAATGCACAGAGTTTACTCCAAAGCTTGTTGAGTTTTATACGAAGTTGAAGG 720
Query 791 AGAATAAGGAGGATTTTGAGATTGTGTTGATATCTCTTGAAGATGATGAGGAGTCTTTTA 850
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 721 AGAATAAGGAGGATTTTGAGATTGTGTTGATATCTCTTGATGATGATGAGGAGTCTTTTA 780
Query 851 ATCAAGACTTCAAGACCAAGCCATGGCTAGCATTGCCGTTCAACGACAAAAGTGGATCAA 910
|||| || ||||||||||||||||||||| | |||||||||||||||||||| | ||| |
Sbjct 781 ATCAGGAATTCAAGACCAAGCCATGGCTATCGTTGCCGTTCAACGACAAAAGCGCATCGA 840
Query 911 AATTGGCTCGGCATTTCATGCTGTCAACACTACCGACACTGGTCATTCTCGGCCCTGATG 970
||||||||||||| ||||||||| |||| |||||||| ||||| ||||| || |||||||
Sbjct 841 AATTGGCTCGGCACTTCATGCTGGCAACGCTACCGACGCTGGTTATTCTTGGGCCTGATG 900
Query 971 GAAAAACCCGTCACTCGAATGTCGCTGAAGCTATTGATGACTATGGAGTTCTTGCGTATC 1030
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 901 GAAAAACCCGTCACTCGAATGTCGCTGAAGCTATTGATGACTATGGAGTTCTTGCTTATC 960
Query 1031 CTTTCACTCCAGAGAAGTTTCAAGAACTCAAGGAGCTAGAAAAGGCAAAGGTAGAGGCTC 1090
|||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 961 CTTTCACTCCTGAGAAGTTTGAAGAACTCAAGGAGATAGAAAAGGCAAAGGTAGAGGCTC 1020
Query 1091 AAACGCTCGAGTCACTTCTTGTCTCAGGTGATCTCAACTACGTTCTCGGAAAAGATGGGG 1150
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1021 AAACGCTCGAGTCACTTCTTGTCTCAGGTGATCTCAACTATGTTCTTGGAAAAGATGGGG 1080
Query 1151 CAAAGGTGCTTGTTTCGGATCTGGTGGGGAAGA-CTATTCTTATGTACTTCTCAGCTCAC 1209
| ||||||||| ||||||||||||| ||||||| | |||||||| |||||||||||||||
Sbjct 1081 CTAAGGTGCTTATTTCGGATCTGGTCGGGAAGAAC-ATTCTTATATACTTCTCAGCTCAC 1139
Query 1210 TGGTGTCCTCCTTGTCGCGCTTTTACACCAAAGCTTGTTGAAGTATACAAGCAGATAAAG 1269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 TGGTGTCCTCCTTGTCGCGCTTTTACACCAAAGCTTGTTGAAGTATACAAGCAGATAAAG 1199
Query 1270 GAGCGGAATGAAGCGTTTGAATTGATCTTCATCTCCAGTGACCGTGACCAGGAATCATTC 1329
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 GAGCGGGATGAAGCGTTTGAATTGATCTTCATCTCCAGTGACCGTGACCAGGAATCATTT 1259
Query 1330 GATGAGTACTATTCGCAAATGCCGTGGCTGGCTCTTCCATTTGGTGATCCTAGGAAAGCA 1389
||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||| ||
Sbjct 1260 GATGAGTACTACTCGCAAATGCCGTGGCTGGCTCTTCCATTTGGTGATTCTAGAAAAACA 1319
Query 1390 TCCTTGGCAAAAACCTTTAAGGTTGGTGGGATCCCAATGCTAGCAGCTCTGGGACCAACT 1449
||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1320 TCCTTGGCACGAACCTTCAAGGTCGGTGGGATCCCAATGCTAGCAGCTCTGGGACCAACT 1379
Query 1450 GGGCAAACCGTAACAAAAGAAGCAAGGGACCTTGTCGTAGCCCATGGAGCCGATGCTTAC 1509
||| |||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1380 GGGAAAACTGTAACAAAAGAAGCAAGGGACCTTGTGGTAGCCCATGGAGCCGAGGCTTAC 1439
Query 1510 CCTTTTACTGAGGAACGTTTGAAGGAGATTGAAGCTAAGTACGATGAGATAGCAAAAGAT 1569
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1440 CCTTTTACTGAGGAACGTTTGAAGGAGATTGAAGCTAAGTACGATGACATGGCAAAAGAG 1499
Query 1570 TGGCCTAAGAAGGTGAAACATGTTCTCCATGAAGAACATGAGCTAGAACTAACTCGTGTT 1629
||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||
Sbjct 1500 TGGCCTAAGAAGGTGAAACATGTACTTCATGAAGAACATGAGCTAGAACTGACTCGTGTA 1559
Query 1630 CAGGTTTACACATGCGATAAGTGTGAGGAAGAAGGGACAATATGGTCTTACCATTGCGAC 1689
||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1560 CAGGTTTACACGTGCGATAAGTGCGAGGAAGAAGGGACAATATGGTCTTACCAGTGCGAC 1619
Query 1690 GAATGCGACTTTGATCTTCACGCCAAGTGTGCTTTAAACGAGGACACAAAAGAAAACGGC 1749
|||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 1620 GAATGCAACTTTGATCTTCACGCCAAGTGTGCTTTAAAGGAGGACACAAAAGCAAACGGC 1679
Query 1750 GATGAGGCTGTGAAAGTTGGTGGC-GACGAGTCCAAAGATGGTTGGGTTTGTGAAGGAAA 1808
|||||||||||||||| |||| | | |||||||| |||||||||||||||||| ||| |
Sbjct 1680 GATGAGGCTGTGAAAGAAGGTGACAG-CGAGTCCACAGATGGTTGGGTTTGTGACGGAGA 1738
Query 1809 CGTATGCACCAAGGCCTGATAGGTAGCTTCAGGCACA 1845
|||||||||||||||||||||||||||||||||||||
Sbjct 1739 CGTATGCACCAAGGCCTGATAGGTAGCTTCAGGCACA 1775
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74885421670
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5