BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G60430.1
Length=1052
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925019 jgi|Araly1|925019|scaffold_200580.1 876 0.0
> Ahg925019 jgi|Araly1|925019|scaffold_200580.1
Length=565
Score = 876 bits (474), Expect = 0.0
Identities = 529/556 (95%), Gaps = 2/556 (0%)
Strand=Plus/Plus
Query 226 ATTCGGCACAAAATGGTTTATCACTCGAGTTTTGTGGATGAAGAA-GGAGTAACAAAGGC 284
||| ||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||
Sbjct 9 ATTGGGCACAAAATGGTTTATCACTCGAGCTTTGTGGATGAAGAAGGGA-TAACAAAGGC 67
Query 285 ATGTGGTTGTCCATTGCTTCCTCTCAAGAGTCATATAAAAGGTCCTGCACCTGTTTCAGA 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 68 ATGTGGTTGTCCATTGCTTCCTCTCAAGAGTCATATAAAAGGTCCTGCACCTGTTTCAGA 127
Query 345 ACAAGATAAAACTGATATAGTAGACGAGGCAATCACCTTCTTTCGTGCTAATGTCTTCTT 404
|||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct 128 ACAAGATAAAACTGATATCGTGGACGAGGCGATCACCTTCTTTCGTGCTAATGTCTTCTT 187
Query 405 CACAAACTTTGATATCAAAAGTCCTGCTGATAAGCTCCTTATTTACTTGACGTTTTATAT 464
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 188 CACAAACTTTGATATCAAAAGTCCTGCTGATAAGCTTCTTATTTACTTGACGTTTTACAT 247
Query 465 AAATGTGGCGTTAAAGAGGCTTGAAGGCTGTAGAACATTGGCTGTTGGAACTAAAGCGAT 524
||||||||||||||||||||| |||||||||||||| ||||||||||||||||| || ||
Sbjct 248 AAATGTGGCGTTAAAGAGGCTCGAAGGCTGTAGAACGTTGGCTGTTGGAACTAAGGCCAT 307
Query 525 TATCAACTTGGGTTTAGAAGATATTCCTGTTCCTGGAGAAACTGGCTTTCCTTTCCCAGG 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 308 TATCAACTTGGGTTTAGAAGATATTCCTGTTCCTGGAGAAACTGGCTTTCCTTTCCCAGG 367
Query 585 TCTCTTTTCGCTTCCGCAGTCCCAGGACGAAGCAGAGCTTTTCAGGAACTATCTTAAGCA 644
|||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 368 CCTCTTTTCGCTTCCTCAGTCCCAGGAAGAAGCAGATCTTTTCAGGAACTATCTTAAGCA 427
Query 645 GGTTCGAGAGGAGACAAGTGGGAGGTTACTGAGTGTAGCATATAGAGCCAACGGGACACC 704
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 428 GGTTCGAGAGGAGACAAGTGGGAGGCTACTGAGTGTAGCGTATAGAGCCAACGGGACACC 487
Query 705 AAATAAATGGTGGCTTGCATTCGCCAAGAGGAAATTCATGAACGTGGTCGTCCTATGATA 764
||| ||||||||||||||||| |||||| |||||||||| ||||| ||||||||||||||
Sbjct 488 AAACAAATGGTGGCTTGCATTTGCCAAGCGGAAATTCATAAACGTTGTCGTCCTATGATA 547
Query 765 AAACAGAGAATCACTG 780
||||| | |||||||
Sbjct 548 AAACACATTATCACTG 563
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39152235759
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5