BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G60440.1
Length=1481
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475288 jgi|Araly1|475288|fgenesh2_kg.2__418__AT1G60440.1 1934 0.0
> Ahg475288 jgi|Araly1|475288|fgenesh2_kg.2__418__AT1G60440.1
Length=1287
Score = 1934 bits (1047), Expect = 0.0
Identities = 1214/1292 (94%), Gaps = 21/1292 (2%)
Strand=Plus/Plus
Query 174 ATGGATCCGACTC---AAATCTCTCATTTGGCTCTCGACATCGGAGGGACTCTGATCAAG 230
|||||| |||||| ||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 1 ATGGATTCGACTCAAAAAATCTCTCATTTGGCTCTCGACATCGGAGGGACTTTGATAAAG 60
Query 231 CTTGTGTATTTCTCTGCAAATGGAGATTATAGCGAAGAGTCTCGTAATGGTTGCTCTGTT 290
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTTGTGTATTTCTCGGCAAATGGAGATTATAGCGAAGAGTCTCGTAATGGTTGCTCTGTT 120
Query 291 G-TGAAAGGAAGGCTTTGTTTCGCTAAGTTTGAGACTAGAAAGATTGATGATTGTTTGGA 349
| | | |||| |||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 121 GTTCATGGGAA-GCTTTGTTTCGCCAAGTTTGAGACCAGAAAGATTGATGATTGTTTGGA 179
Query 350 GTTTATTCGATTCAATATCCTTCATCATTCCGGTGTACAGCAACCGAATGGCGAAGG-TC 408
|||||||||||||||||| ||||||||||||||||| ||||| |||||||||| || ||
Sbjct 180 GTTTATTCGATTCAATATTCTTCATCATTCCGGTGTTCAGCATCCGAATGGCG-TGGCTC 238
Query 409 ATGATAAACTTTATGTTAAGGCCACAGGTGGTGGGGCATTTAAGTTTGCTGATCTCTTTA 468
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 TTGATAAACTTTATGTTAAGGCCACAGGTGGTGGGGCATTTAAGTTTGCTGATCTCTTTA 298
Query 469 AGGAGAAACTTGGTATTCTTTTCGATAAGGAAGATGAGATGTGTTCTCTTGTTGGTGGTG 528
||||||||||||| |||||||| |||||||||||||||||| |||||||||||| ||||
Sbjct 299 AGGAGAAACTTGGAATTCTTTTTGATAAGGAAGATGAGATGCATTCTCTTGTTGGGGGTG 358
Query 529 TTAATTTTCTACTAAAGACTGTCCCAAGGGAAGCTTTTACCTACTTAGATGGCCAAAAGA 588
||||||||||| ||||||| |||||||||||||||||||||||||| |||||||| |||
Sbjct 359 TTAATTTTCTATTAAAGACAGTCCCAAGGGAAGCTTTTACCTACTTGGATGGCCAGAAGG 418
Query 589 AGTTTGTCGAGATCGACCATAATGATTTGTATCCATATCTACTAGTCAACATCGGTTCTG 648
||||||||||||||||||||||||||||||| ||||||||||| || || || || ||||
Sbjct 419 AGTTTGTCGAGATCGACCATAATGATTTGTACCCATATCTACTTGTTAATATAGGCTCTG 478
Query 649 GCGTTAGCATGATCAAGGTCGATGGAGATGGAAAATATGAGAGGATAAGTGGAACAAGCC 708
|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 479 GCGTTAGCATGATCAAGGTCGATGGAGATGGAAAGTATGAGCGGATAAGTGGAACAAGCC 538
Query 709 TTGGCGGAGGCACATTTTTAGGTCTTGGGAAGCTTTTAACAAAATGCAAGAGTTTTGATG 768
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 539 TTGGTGGAGGCACATTTTTAGGTCTTGGAAAGCTTTTAACAAAATGCAAGAGTTTTGATG 598
Query 769 AGCTGCTAGAGTTAAGCCACCATGGAAATAACAGAGTAATTGACATGCTTGTGGGGGATA 828
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 AGCTGCTAGAGTTAAGTCACCATGGAAATAACAGAGTAATTGACATGCTTGTGGGGGATA 658
Query 829 TCTACGGTGGAACAGATTATTCAAAGATTGGTCTCTCCTCAACAGCTATCGCTTCCAGCT 888
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TCTATGGTGGAACAGATTATTCAAAGATTGGTCTCTCCTCAACAGCTATCGCTTCCAGCT 718
Query 889 TTGGGAAAGCGATTTCTGATGGTAAAGAACTTGAAGATTACCAGCCAGAAGATGTGGCAA 948
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 719 TTGGGAAAGCGATTTCTGATGGCAAAGAACTTGAAGATTACCAGCCAGAAGATGTTGCAA 778
Query 949 GGTCCCTTCTAAGAATGATATCAAATAACATCGGTCAGATTGCTTATTTGAATGCTCTCA 1008
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GGTCCCTTCTACGAATGATATCAAATAACATCGGTCAGATTGCTTATTTGAATGCTCTCA 838
Query 1009 GATTCGGTCTTAAGCGTATTTTCTTTGGTGGATTTTTCATCCGTGGGCTTGAGTACACCA 1068
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 GATTCGGTCTTAAGCGTATTTTCTTTGGTGGATTTTTCATCCGTGGGCTTGAGTACACCA 898
Query 1069 TGGACACAATCTCCGTTGCTGTTCACTTTTGGTCGAGAGGTGAGGCAAAGGCAATGTTTT 1128
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 899 TGGACACAATCTCTGTTGCTGTTCACTTTTGGTCGAGAGGTGAGGCGAAGGCAATGTTTT 958
Query 1129 TACGACATGAAGGGTTTCTTGGAGCATTAGGCGCTTTCACGAGCTACAATGACCAGAGCC 1188
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 959 TACGACATGAAGGGTTTCTTGGAGCATTAGGCGCTTTCACGAGCTACAACAACCAGAGCC 1018
Query 1189 ATAACGATTTAAAACCGCATCATCACACTGTGCAAAGAGCAATTCTCAACTGTTCAGGTC 1248
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 ATAACGATTTAAAACCGCATCATCACACTGTGCAAAGAGCAATTCTCAACTGTTCAGGTG 1078
Query 1249 ATAACTTTCGGCACATCCCAGTAACTTCAAATTTAAACGAAAGCGAGACCATAGAATGTA 1308
||||||| || |||||||| |||||||||||||||||||| || || |||||||||||||
Sbjct 1079 ATAACTTACGACACATCCCCGTAACTTCAAATTTAAACGATAGTGAAACCATAGAATGTA 1138
Query 1309 GCATCAATTTAGTTTAGTT----ATCACCAGTTGTATTATTATCAATTCAGTGTAGAAAT 1364
||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||
Sbjct 1139 GCATCAATTTAGTTTAGTTGGTTATCACCAGTTGTATTGTTATCAATTCAGT--AGAAAT 1196
Query 1365 ATGT-T---T-AATCAACTGTTTGAGTCAAGAGCTGCTCATTACTAGTTTGTTGAATGTT 1419
|||| | | ||| || ||||||| ||||||||||| | | ||||||||||||||||
Sbjct 1197 ATGTGTAAGTTAATTAATTGTTTGAATCAAGAGCTGCG--T-AGTAGTTTGTTGAATGTT 1253
Query 1420 AGACACATTTATGTAAGATGATTCACGTATTA 1451
||||| ||||||||||||||||||||||||||
Sbjct 1254 AGACAAATTTATGTAAGATGATTCACGTATTA 1285
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55421306475
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5