BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G60440.1 Length=1481 Score E Sequences producing significant alignments: (Bits) Value Ahg475288 jgi|Araly1|475288|fgenesh2_kg.2__418__AT1G60440.1 1934 0.0 > Ahg475288 jgi|Araly1|475288|fgenesh2_kg.2__418__AT1G60440.1 Length=1287 Score = 1934 bits (1047), Expect = 0.0 Identities = 1214/1292 (94%), Gaps = 21/1292 (2%) Strand=Plus/Plus Query 174 ATGGATCCGACTC---AAATCTCTCATTTGGCTCTCGACATCGGAGGGACTCTGATCAAG 230 |||||| |||||| ||||||||||||||||||||||||||||||||||| |||| ||| Sbjct 1 ATGGATTCGACTCAAAAAATCTCTCATTTGGCTCTCGACATCGGAGGGACTTTGATAAAG 60 Query 231 CTTGTGTATTTCTCTGCAAATGGAGATTATAGCGAAGAGTCTCGTAATGGTTGCTCTGTT 290 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CTTGTGTATTTCTCGGCAAATGGAGATTATAGCGAAGAGTCTCGTAATGGTTGCTCTGTT 120 Query 291 G-TGAAAGGAAGGCTTTGTTTCGCTAAGTTTGAGACTAGAAAGATTGATGATTGTTTGGA 349 | | | |||| |||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 121 GTTCATGGGAA-GCTTTGTTTCGCCAAGTTTGAGACCAGAAAGATTGATGATTGTTTGGA 179 Query 350 GTTTATTCGATTCAATATCCTTCATCATTCCGGTGTACAGCAACCGAATGGCGAAGG-TC 408 |||||||||||||||||| ||||||||||||||||| ||||| |||||||||| || || Sbjct 180 GTTTATTCGATTCAATATTCTTCATCATTCCGGTGTTCAGCATCCGAATGGCG-TGGCTC 238 Query 409 ATGATAAACTTTATGTTAAGGCCACAGGTGGTGGGGCATTTAAGTTTGCTGATCTCTTTA 468 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 239 TTGATAAACTTTATGTTAAGGCCACAGGTGGTGGGGCATTTAAGTTTGCTGATCTCTTTA 298 Query 469 AGGAGAAACTTGGTATTCTTTTCGATAAGGAAGATGAGATGTGTTCTCTTGTTGGTGGTG 528 ||||||||||||| |||||||| |||||||||||||||||| |||||||||||| |||| Sbjct 299 AGGAGAAACTTGGAATTCTTTTTGATAAGGAAGATGAGATGCATTCTCTTGTTGGGGGTG 358 Query 529 TTAATTTTCTACTAAAGACTGTCCCAAGGGAAGCTTTTACCTACTTAGATGGCCAAAAGA 588 ||||||||||| ||||||| |||||||||||||||||||||||||| |||||||| ||| Sbjct 359 TTAATTTTCTATTAAAGACAGTCCCAAGGGAAGCTTTTACCTACTTGGATGGCCAGAAGG 418 Query 589 AGTTTGTCGAGATCGACCATAATGATTTGTATCCATATCTACTAGTCAACATCGGTTCTG 648 ||||||||||||||||||||||||||||||| ||||||||||| || || || || |||| Sbjct 419 AGTTTGTCGAGATCGACCATAATGATTTGTACCCATATCTACTTGTTAATATAGGCTCTG 478 Query 649 GCGTTAGCATGATCAAGGTCGATGGAGATGGAAAATATGAGAGGATAAGTGGAACAAGCC 708 |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| Sbjct 479 GCGTTAGCATGATCAAGGTCGATGGAGATGGAAAGTATGAGCGGATAAGTGGAACAAGCC 538 Query 709 TTGGCGGAGGCACATTTTTAGGTCTTGGGAAGCTTTTAACAAAATGCAAGAGTTTTGATG 768 |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 539 TTGGTGGAGGCACATTTTTAGGTCTTGGAAAGCTTTTAACAAAATGCAAGAGTTTTGATG 598 Query 769 AGCTGCTAGAGTTAAGCCACCATGGAAATAACAGAGTAATTGACATGCTTGTGGGGGATA 828 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 599 AGCTGCTAGAGTTAAGTCACCATGGAAATAACAGAGTAATTGACATGCTTGTGGGGGATA 658 Query 829 TCTACGGTGGAACAGATTATTCAAAGATTGGTCTCTCCTCAACAGCTATCGCTTCCAGCT 888 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 659 TCTATGGTGGAACAGATTATTCAAAGATTGGTCTCTCCTCAACAGCTATCGCTTCCAGCT 718 Query 889 TTGGGAAAGCGATTTCTGATGGTAAAGAACTTGAAGATTACCAGCCAGAAGATGTGGCAA 948 |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| Sbjct 719 TTGGGAAAGCGATTTCTGATGGCAAAGAACTTGAAGATTACCAGCCAGAAGATGTTGCAA 778 Query 949 GGTCCCTTCTAAGAATGATATCAAATAACATCGGTCAGATTGCTTATTTGAATGCTCTCA 1008 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 779 GGTCCCTTCTACGAATGATATCAAATAACATCGGTCAGATTGCTTATTTGAATGCTCTCA 838 Query 1009 GATTCGGTCTTAAGCGTATTTTCTTTGGTGGATTTTTCATCCGTGGGCTTGAGTACACCA 1068 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 839 GATTCGGTCTTAAGCGTATTTTCTTTGGTGGATTTTTCATCCGTGGGCTTGAGTACACCA 898 Query 1069 TGGACACAATCTCCGTTGCTGTTCACTTTTGGTCGAGAGGTGAGGCAAAGGCAATGTTTT 1128 ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 899 TGGACACAATCTCTGTTGCTGTTCACTTTTGGTCGAGAGGTGAGGCGAAGGCAATGTTTT 958 Query 1129 TACGACATGAAGGGTTTCTTGGAGCATTAGGCGCTTTCACGAGCTACAATGACCAGAGCC 1188 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 959 TACGACATGAAGGGTTTCTTGGAGCATTAGGCGCTTTCACGAGCTACAACAACCAGAGCC 1018 Query 1189 ATAACGATTTAAAACCGCATCATCACACTGTGCAAAGAGCAATTCTCAACTGTTCAGGTC 1248 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1019 ATAACGATTTAAAACCGCATCATCACACTGTGCAAAGAGCAATTCTCAACTGTTCAGGTG 1078 Query 1249 ATAACTTTCGGCACATCCCAGTAACTTCAAATTTAAACGAAAGCGAGACCATAGAATGTA 1308 ||||||| || |||||||| |||||||||||||||||||| || || ||||||||||||| Sbjct 1079 ATAACTTACGACACATCCCCGTAACTTCAAATTTAAACGATAGTGAAACCATAGAATGTA 1138 Query 1309 GCATCAATTTAGTTTAGTT----ATCACCAGTTGTATTATTATCAATTCAGTGTAGAAAT 1364 ||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||| Sbjct 1139 GCATCAATTTAGTTTAGTTGGTTATCACCAGTTGTATTGTTATCAATTCAGT--AGAAAT 1196 Query 1365 ATGT-T---T-AATCAACTGTTTGAGTCAAGAGCTGCTCATTACTAGTTTGTTGAATGTT 1419 |||| | | ||| || ||||||| ||||||||||| | | |||||||||||||||| Sbjct 1197 ATGTGTAAGTTAATTAATTGTTTGAATCAAGAGCTGCG--T-AGTAGTTTGTTGAATGTT 1253 Query 1420 AGACACATTTATGTAAGATGATTCACGTATTA 1451 ||||| |||||||||||||||||||||||||| Sbjct 1254 AGACAAATTTATGTAAGATGATTCACGTATTA 1285 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55421306475 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5