BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G60450.1
Length=999
Score E
Sequences producing significant alignments: (Bits) Value
Ahg907432 jgi|Araly1|907432|Al_scaffold_0002_513 1469 0.0
Ahg475283 jgi|Araly1|475283|fgenesh2_kg.2__413__AT1G60470.1 837 0.0
> Ahg907432 jgi|Araly1|907432|Al_scaffold_0002_513
Length=993
Score = 1469 bits (795), Expect = 0.0
Identities = 934/1001 (93%), Gaps = 10/1001 (1%)
Strand=Plus/Plus
Query 1 ATGACCCCTGAAACTCATGTGGACATGATCAATGCATCCGAGAAGGCTCCTAAGGAGAGA 60
||| |||||||||||||||||||||||||| |||||||||||||||||| |||| |||||
Sbjct 1 ATGGCCCCTGAAACTCATGTGGACATGATCCATGCATCCGAGAAGGCTCATAAGAAGAGA 60
Query 61 GCCTACGTGACGTTTTTGGCAGGAAATGGAGACTACGTGAAGGGAGTGGTGGGATTAGCA 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GCATACGTGACGTTTTTGGCAGGAAATGGAGACTACGTGAAGGGAGTGGTGGGATTAGCA 120
Query 121 AAGGGTTTGCGGAAGGTCAAAAGTGCGTATCCTCTTGTTGTTGCTATGTTACCTGATGTG 180
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 121 AAGGGTTTGCGGAAAGTCAAAAGTGCGTATCCTCTTGTTGTTGCTACGTTACCTGATGTG 180
Query 181 CCTGAAGAACATAGAGAGATCTTGAGGTCTCAAGGATGCATTGTGCGTGAGATCGAGCCT 240
||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 181 CCTGAGGAACATAGAGAGATCTTGAGGTCTCAAGGCTGCGTTGTGCGTGAGATCGAGCCT 240
Query 241 GTTCATCCTCCAGATAGCCAAGATGCATACGCAAGGGCTTATTACATTATTAACTACTCA 300
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 241 GTTCATCCTCCAGATAGCCAAGATGCATACGCAAGGGCTTATTACGTTATTAACTACTCC 300
Query 301 AAACTGCGAATTTGGAATTTTGAAGAGTACAACAAGATGATCTACTTGGACGCAGATATT 360
||||||||||||||||| ||||||||||||||||||||| | ||||| || | |||||||
Sbjct 301 AAACTGCGAATTTGGAACTTTGAAGAGTACAACAAGATGGTTTACTTAGATGGAGATATT 360
Query 361 CAAGTCTTTGGCAATATCGATGACCTCTTTGATATGCAAGATGGCTATTTACATGGCGTG 420
|||||||||| |||||||||||||||||| ||| || ||||||||||| |||||||||||
Sbjct 361 CAAGTCTTTGACAATATCGATGACCTCTTCGATTTGGAAGATGGCTATGTACATGGCGTG 420
Query 421 TTGAGTTGTTTCTGTGAGAAAATATGGAGTTACACTCCTCTCTACTCGATCGGCTATTGT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 421 TTGAGTTGTTTCTGTGAGAAAATATGGAGTTACACTCCTCTCTACTCGATCGGTTATTGT 480
Query 481 CAATATTGTCCTGAGAAGGTCGTGTGGCCCGCCGAGATGGAATCTGCTCCTCCCTC-TCC 539
||||||||||| ||||||||| ||||||| ||||| ||| ||||||||| ||| || |||
Sbjct 481 CAATATTGTCCAGAGAAGGTCATGTGGCCGGCCGAAATGAAATCTGCTCGTCC-TCCTCC 539
Query 540 ATACTTCAATGCCGGTATGTTTGTATTTGAGCCTAATCCTTTGACGTATGAGAGTCTCCT 599
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 540 ATACTTCAATGCTGGTATGTTTGTCTTTGAGCCTAATCCTTTGACGTATGAGAGTCTCCT 599
Query 600 TCAGACCCTCCAGGTCACACCTCCTACACCATTTGCGGAGCAAGATTTTCTCAATATGTT 659
||| ||||||||| ||||||| ||| |||| |||||||||||||||||||||||||||||
Sbjct 600 TCATACCCTCCAGATCACACCGCCTTCACCGTTTGCGGAGCAAGATTTTCTCAATATGTT 659
Query 660 CTTTGGGAAGGTCTTTAAACCGGTATCTCCGGTATACAACCTGATT-TTGTCTGTGCTTT 718
||||| ||| || ||||||||||| |||||||| |||||||||||| || ||||||||||
Sbjct 660 CTTTGAGAAAGTTTTTAAACCGGTCTCTCCGGTTTACAACCTGATTCTT-TCTGTGCTTT 718
Query 719 GGCGCCATCCGGGGAAGGTTGACTTGGAGAGTGTCAAAGTTGTTCACTACTGTCCACCTG 778
|||||||||| ||||| |||||||||||||| |||||||||||||| |||||||||||||
Sbjct 719 GGCGCCATCCTGGGAATGTTGACTTGGAGAGAGTCAAAGTTGTTCATTACTGTCCACCTG 778
Query 779 GATCCAAGCCATGGAGGTACACAGGAGAAGAACCTAACATGGACAGAGAAGACGTCAAAA 838
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 779 GATCCAAGCCATGGAGGTACACAGGAGAAGAACCTAACATGGACAGGGAAGACGTCAAAA 838
Query 839 TGTTAATTAAGAAATGGTGGGATATCTACAATGACGAGTCTCTTGATTTTAAACCGAAAA 898
||||||||| |||||||||||||||||| || ||||||||||||||||| ||||||||||
Sbjct 839 TGTTAATTAGGAAATGGTGGGATATCTATAACGACGAGTCTCTTGATTTCAAACCGAAAA 898
Query 899 GCCCTGCAGATTTGGAAGCAACCGTTTTGGAATCAACAATTATAGCTTCGGTAACCGAAG 958
|||||||||||||||||||||| ||| | ||||||||| ||||||||||| || |
Sbjct 899 ACCCTGCAGATTTGGAAGCAACCCTTTCGAAATCAACAACTATAGCTTCGG-AA--G--- 952
Query 959 CACCACTTTCCTACTCTCCTGCTGCACCTTCTGCCGCTTGA 999
|||||||||||||||||||||||||||||||||| ||||||
Sbjct 953 CACCACTTTCCTACTCTCCTGCTGCACCTTCTGCAGCTTGA 993
> Ahg475283 jgi|Araly1|475283|fgenesh2_kg.2__413__AT1G60470.1
Length=1326
Score = 837 bits (453), Expect = 0.0
Identities = 791/954 (83%), Gaps = 23/954 (2%)
Strand=Plus/Plus
Query 56 AGAGAGCCTACGTGACGTTTTTGGCAGGAAATGGAGACTACGTGAAGGGAGTGGTGGGAT 115
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 184 AGAGAGCTTATGTGACGTTTTTGGCAGGAAATGGAGACTACGTGAAGGGAGTGGTGGGAT 243
Query 116 TAGCAAAGGGTTTGCGGAAGGTCAAAAGTGCGTATCCTCTTGTTGTTGCTATGTTACCTG 175
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 244 TAGCAAAGGGTTTGCGTAAGGTCAAAAGTGCTTATCCTCTTGTTGTTGCTATGTTACCTG 303
Query 176 ATGTGCCTGAAGAACATAGAGAGATCTTGAGGTCTCAAGGATGCATTGTGCGTGAGATCG 235
|||||||||| ||||||||||||||||||||||||||||| || || |||| |||||||
Sbjct 304 ATGTGCCTGAGGAACATAGAGAGATCTTGAGGTCTCAAGGCTGTATCCTGCGCGAGATCG 363
Query 236 AGCCTGTTCATCCTCCAGATAGCCAAGATGCA-TACGCAAGGGCTTATTACATTATTAAC 294
|||||||| |||||||||| | ||||| || | | || | |||||| || || | |||
Sbjct 364 AGCCTGTTTATCCTCCAGAAAACCAAGTTG-AGTTTGCCATGGCTTACTATGTTCTCAAC 422
Query 295 TACTCAAAACTGCGAATTTGGAATTTTGAAGAGTACAACAAGATGATCTAC-TTGGACGC 353
|||||||| || || |||||||| |||||||||||| ||||||||| ||| ||| | ||
Sbjct 423 TACTCAAAGCTTCGTATTTGGAACTTTGAAGAGTACCTCAAGATGATATACCTTG-ATGC 481
Query 354 AGATATTCAAGTCTTTGGCAATATCGATGACCTCTTTGATATGCAAGATGGCTATTTACA 413
||||||||||||||||| || |||||||| ||||| ||| ||| ||||| ||||| ||
Sbjct 482 AGATATTCAAGTCTTTGAAAACATCGATGAACTCTTCGATTTGCCTGATGGGTATTTCCA 541
Query 414 TGGCGTGTTG-AGTTGTTTCTGTGAGAAAATATGGAGTTACACTC-CT-CTCTACTCGAT 470
|| |||| || | | ||||||||||||||| |||||| ||||| || | || || ||
Sbjct 542 TGCCGTGATGGACT-GTTTCTGTGAGAAAACATGGAGC--CACTCGCTGCAGTATTCAAT 598
Query 471 CGGCTATTGTCAATATTGTCCTGAGAAGGTCGTGTGGCCCGCCGAGATGGAATCTGCTCC 530
|| || |||||| | || || || |||||| |||||| | || ||||||||| | ||
Sbjct 599 TGGGTACTGTCAACAGTGCCCGGATAAGGTCACGTGGCCAGAAGATATGGAATCTCCACC 658
Query 531 TCCCTC-TCCATACTTCAATGCCGGTATGTTTGTATTTGAGCCTAATCCTTTGACGTATG 589
||| || || || ||||| |||||||||||||| |||||||||| ||||||||| ||||
Sbjct 659 TCC-TCCTCTGTATTTCAACGCCGGTATGTTTGTGTTTGAGCCTAGTCCTTTGACTTATG 717
Query 590 AGAGTCTCCTTCAGACCCTCCAGGTCACACCTCCTACACCATTTGCGGAGCAAGATTTTC 649
||||||||||||||||||| || ||||||| ||| |||| ||||| || ||||||||||
Sbjct 718 AGAGTCTCCTTCAGACCCTGGAGATCACACCACCTTCACCGTTTGCAGAACAAGATTTTC 777
Query 650 TCAATATGTTCTTTGGGA-AGGTCTTTAAACCGGTATCTCCGGTATACAACCTGATTTTG 708
||||||||||||||| || || | | |||||| | ||| || ||||| ||| || ||
Sbjct 778 TCAATATGTTCTTTGAGAGAG-TGTACAAACCGATCCCTCTAGTTTACAATCTGGTTCTG 836
Query 709 TCTGTGCTTTGGCGCCATCCGGGGAAGGTTGA-CTTGGAGAGTGTCAAAGTTGTTCACTA 767
|| |||||||||| || || | ||| || || || ||||| |||||||||||||||||
Sbjct 837 GCTATGCTTTGGCGTCACCCAGAGAACGTGGAGCT-GGAGAAAGTCAAAGTTGTTCACTA 895
Query 768 CTGTCCACCTGGATCCAAGCCATGGAGGTACACAGGAGAAGAACCTAACATGGACAGAGA 827
|||| || |||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 896 CTGTGCAGCTGGATCCAAGCCATGGAGGTATACAGGAGAAGAAGCTAACATGGACAGAGA 955
Query 828 AGACGTCAAAATGTTAATTAAGAAATGGTGGGATATCTACAATGACGAGTCTCTTGATTT 887
|||| |||| |||||| || | |||||||||||| |||| ||||| || ||||| |||||
Sbjct 956 AGACATCAAGATGTTAGTTGATAAATGGTGGGATGTCTATAATGATGAATCTCTCGATTT 1015
Query 888 TAAACCGAAAAGCCCTGCAGATTTGGAAGCAACCGTTTTGGAATCAA-CAATTATAGCTT 946
||| ||| || |||||||||| ||||| ||||||| |||| | || | ||||||
Sbjct 1016 CAAATCGATAATCCCTGCAGATGCGGAAGAAACCGTTACAAAATCGAGCA-TCCTAGCTT 1074
Query 947 CGGTAAC-CGAAGCACCACTTTCCTACTCTCCTGCTGCACCTTCTGCCGCTTGA 999
||||| | |||| || | || |||||| ||| | |||||||| || ||||||
Sbjct 1075 CGGTA-CTCGAACCAGAAATTACCTACT-TCC--CAGCACCTTCCGCTGCTTGA 1124
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37131721158
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5