BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G60460.1
Length=1719
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475285 jgi|Araly1|475285|fgenesh2_kg.2__415__AT1G60460.3 2134 0.0
> Ahg475285 jgi|Araly1|475285|fgenesh2_kg.2__415__AT1G60460.3
Length=1636
Score = 2134 bits (1155), Expect = 0.0
Identities = 1323/1404 (94%), Gaps = 12/1404 (1%)
Strand=Plus/Plus
Query 112 CTGCCATGGAAAACAATGCTCCGGTTCCGAAGCTTCTTCTACAATTAATCTCATCTGCTT 171
|||||||||||| || ||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1 CTGCCATGGAAACCACCGCTCCGGTTCCAAAGCTTCTTCTACAATTAATATCATCTGCTT 60
Query 172 TCCAAAGATGCCGTTTAGCAGAAGATCTCTGTAGATTATCAGTTCTTCTTGACCAATCCA 231
| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 61 TTCAAAGATGCCGTTTATCAGAAGATCTCTGTAGATTATCAGTTCTTCTTGACCAATCTA 120
Query 232 CCGAAA-GA-GATCCTCCGATTACTTGTATTTCGATTGCCGATACGGGAATTGGATGCAA 289
| ||| | |||||||||||| | |||||||||||||| ||||||||||||||||||||
Sbjct 121 -C-AAACAATGATCCTCCGATTTCGTGTATTTCGATTGCGGATACGGGAATTGGATGCAA 178
Query 290 TTTGGAGGAATTTCAGAATTTGAGGTGCCCAAGAGAATTCAATGGAGCGAAGATTTGGGA 349
||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||
Sbjct 179 TTTGGAGGAATTTCAGATTTTGAGGTGCCCTAGAGAATTCAATGGAGCCAAGATTTGGGA 238
Query 350 TGGGTTACTCTCCGTCAAAACGACTTGCTTTACTGACGATGAGGTATACTATTATCATAT 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 TGGGTTACTCTCCGTCAAAACGACTTGCTTTACTGACGATGAGGTATACTATTATCATAT 298
Query 410 AAATCTGGATGAGTATATAGCGAACAAAAGACTGAAAAGACAACCTTCTCAGGCTAAGAA 469
|||||| ||||||||||| || |||||| |||||||||||||||||||||||||||||||
Sbjct 299 AAATCTTGATGAGTATATTGCAAACAAACGACTGAAAAGACAACCTTCTCAGGCTAAGAA 358
Query 470 TGGTGCAAAGTTTAGTGGGACTGAAGTATCCCTGAGTGTTTTTGGAAGTATGGATGTTCT 529
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 359 TGGTGCAAAGTTTAGTGGGACGGAAGTATCCCTGACTGTTTTTGGAAGTATGGATGTTCT 418
Query 530 CGTGGCACCGATAATTGGCTTCTTTCAAAAGATCATTGTTCTACAGATACT---TAATGT 586
||||||||||||||||||||||||||||||| || || || | | | || ||||||
Sbjct 419 CGTGGCACCGATAATTGGCTTCTTTCAAAAGGTC-TT-CCCTTCTG-TTCTGCATAATGT 475
Query 587 CACATTGGATCTGATGGTTAAACAA-GGGACTTCTCCTGGTAATCAAACTCAATACGTCT 645
|||| |||||||||||||||||||| |||| |||||||||||||||||||||||| ||||
Sbjct 476 CACAATGGATCTGATGGTTAAACAAGGGGA-TTCTCCTGGTAATCAAACTCAATATGTCT 534
Query 646 TTGCAGTGAACGCTGACAAAACTCCATGCTTTACTGCCTCCAATCTTGAACGGTTGAAGT 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 TTGCAGTGAACGCTGACAAAACTCCATGCTTTACTGCCTCCAATCTTGAACGGTTGAAGT 594
Query 706 CTGGTCTTGAGGACTATGTTTTAAGGCATGCTAACTGTTTGGATACGATGTGTGACTATT 765
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 595 CTGGTCTTGAGGACTATGTTTTAAGGCATGGAAACTGTTTGGATACGATGTGTGACTATT 654
Query 766 GCTTCTCTGATAGAGAGCATCTAAAAGTTGGAAGTGGAACAGTATGCCAGGAAGACAAAC 825
|||| || |||||||||||||| |||| ||||||||||||| ||||||||||||||||||
Sbjct 655 GCTTTTCGGATAGAGAGCATCTGAAAGCTGGAAGTGGAACACTATGCCAGGAAGACAAAC 714
Query 826 ATAAGAGAGTTGGAGGGACGATGGAAGTGGTTATTGTGATAAGTGACTTGCTAGAGTCAA 885
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 715 ATAAGAGAGTTGGAGGGACGATGGAAGTGGTGATTGTGATAAGTGACTTGCTAGAGACAA 774
Query 886 CTCAGCATTGCAGCAGATCATGCAACGGCAAAACAGAGGTTCTATACTTTGACAATTTCT 945
||||||||||||||||||| ||| | || |||||||||||| ||||||||||||||||||
Sbjct 775 CTCAGCATTGCAGCAGATCCTGCGATGGAAAAACAGAGGTTTTATACTTTGACAATTTCT 834
Query 946 TACCTTCCCCTGTTCCACATTTGGCATTGAGCGCATTGAAAAAGATTGACTGGAAAAAAT 1005
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 835 CACCTTCCCCTGTTCCACATTTGGCCTTGAGCGCATTGAAAAAGATTGACTGGAAAAATT 894
Query 1006 ATGGTTTGATCCTGGCGAATGTGAATGATCAAGACGGACATGTGTTTCTCGAGTGGGACA 1065
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 895 ATGGTTTGATCCTGGCGAATGTGAATGATCAAGATGGACATGTGTTTCTCGAGTGGGAAA 954
Query 1066 ATTTCCCTTCATATGTTCAAATACAAATCGCCCTCCATTGGTATCACAATCAATATCCAA 1125
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 955 ATTTCCCTTCTTATGTTCAAATACAAATTTCCCTCCATTGGTATCACAATCAATATCCAG 1014
Query 1126 CAAGGCAGAAGAATGGGCCTGGTATAAGTCTTCTGAAGAAGGGAATAAAAAATGCTTTGG 1185
|||| |||||||||||||||||||||||| || ||||||| ||||| |||||||||||||
Sbjct 1015 CAAGACAGAAGAATGGGCCTGGTATAAGTTTTTTGAAGAAAGGAATGAAAAATGCTTTGG 1074
Query 1186 ACAATTTGAAGGCTAAACATGAGGGTTTTCTTCTAAGCTCACATTCTCGTAAGATTTGCA 1245
| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1075 ATAATTTGAAGGCTAAACATGAGGGTTTTCTTCTAAGCTCACATGCTCGTAAGATTTGCA 1134
Query 1246 GCTATGTCCCTGACCTTGCAAGATCAATAGCAGGCCTAATATTCTCCTCTACTGACTTAG 1305
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1135 GCTATGTCCCTGACCTTGCAAGATCAATAGCAGGCCTAATATTCTCCTCTACTGATTTGG 1194
Query 1306 ACTTCCAAGGAGATTGCCTATCTGTTCTTGGATTTCAGACACAAGAAGTTGAGCGTGACA 1365
|||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||
Sbjct 1195 ACTTCCAAGGAGATTGCCTATCTGTTCTTGGATTTCAGACTCAAAAAGTTGAACGTGACA 1254
Query 1366 CAGTCGAGAACTATATCCAGAGAAAGATCGTGACGGTTATAGGAATGAATGAGAGGAAAC 1425
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1255 CAGTCGAGGACTATATCCAGAGAAAGATCGTGACCGTTATAGGAATGAATGAGAGGAAAC 1314
Query 1426 CCCAGAAAGACCAAGAAGCTGCTCCTTTTCTGTTTTTTGATGGCGAGTCTGAGACGTCGT 1485
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1315 CTCAGAAAGACCAAGAAGCTGCTCCTTTTCTGTTTTTTGATGGCGAGTCTGAGACATCAT 1374
Query 1486 TCTTTGAAGATGAGGAAGTAGAAG 1509
||||||||||||||||||||||||
Sbjct 1375 TCTTTGAAGATGAGGAAGTAGAAG 1398
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64486784785
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5