BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G60470.1
Length=1343
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475283 jgi|Araly1|475283|fgenesh2_kg.2__413__AT1G60470.1 1986 0.0
Ahg907432 jgi|Araly1|907432|Al_scaffold_0002_513 887 0.0
> Ahg475283 jgi|Araly1|475283|fgenesh2_kg.2__413__AT1G60470.1
Length=1326
Score = 1986 bits (1075), Expect = 0.0
Identities = 1226/1299 (94%), Gaps = 9/1299 (1%)
Strand=Plus/Plus
Query 47 CAAACTGTTCTTTTACTTCTCAAACACTCAAGAAAACTTTTCAGTTATCTTCT--ATAAC 104
|||| ||||| |||||||||||||||||||||||||||||||| ||||||||| | |||
Sbjct 32 CAAATTGTTCATTTACTTCTCAAACACTCAAGAAAACTTTTCAATTATCTTCTCAAAAAC 91
Query 105 CTACCCCAATACTTTTTCTTTGCTCAAAATGGCCCCTGAGATTTCCGTAAACCCGATGTA 164
| |||||||||||||| |||||| ||||||||||||| ||||| |||||||| | || ||
Sbjct 92 CCACCCCAATACTTTTACTTTGCACAAAATGGCCCCTCAGATTCCCGTAAACTCAATCTA 151
Query 165 TTTATCCGAAAAGGCGCATCAAGCACCTCCAAGGAGAGCTTATGTGACGTTTTTGGCAGG 224
|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 152 CTTATCCGAAAAGGCGCATCAAGCACCCCCAAAGAGAGCTTATGTGACGTTTTTGGCAGG 211
Query 225 AAATGGAGACTACGTGAAGGGAGTGGTGGGACTAGCAAAGGGTTTGCGTAAGGTCAAAAG 284
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 212 AAATGGAGACTACGTGAAGGGAGTGGTGGGATTAGCAAAGGGTTTGCGTAAGGTCAAAAG 271
Query 285 TGCGTATCCTCTTGTTGTTGCTATGTTACCTGATGTGCCTGAGGAACATAGAGAGATCTT 344
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 272 TGCTTATCCTCTTGTTGTTGCTATGTTACCTGATGTGCCTGAGGAACATAGAGAGATCTT 331
Query 345 GAGGTCTCAAGGCTGTGTCGTGCGTGAGATCGAACCTGTTTATCCTCCAGACAACCAAGT 404
|||||||||||||||| || |||| |||||||| ||||||||||||||||| ||||||||
Sbjct 332 GAGGTCTCAAGGCTGTATCCTGCGCGAGATCGAGCCTGTTTATCCTCCAGAAAACCAAGT 391
Query 405 TGAGTTTGCCATGGCTTATTACGTTCTCAACTACTCAAAACTTCGTATTTGGAACTTTGA 464
|||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct 392 TGAGTTTGCCATGGCTTACTATGTTCTCAACTACTCAAAGCTTCGTATTTGGAACTTTGA 451
Query 465 AGAGTACAGCAAGATGATATACCTTGACGCAGATATTCAAGTCTTTGACAATATCGATCA 524
||||||| |||||||||||||||||| |||||||||||||||||||| || |||||| |
Sbjct 452 AGAGTACCTCAAGATGATATACCTTGATGCAGATATTCAAGTCTTTGAAAACATCGATGA 511
Query 525 CCTCTTTGATTTGTCTGATGCATATTTCTATGCCGTGATGGACTGTTTCTGTGAGAAAAC 584
||||| |||||| |||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 512 ACTCTTCGATTTGCCTGATGGGTATTTCCATGCCGTGATGGACTGTTTCTGTGAGAAAAC 571
Query 585 ATGGAGCCACTCGCTGCAGTATTCAATTGGGTATTGTCAACAGTGCCCGGAGAAGGTCAC 644
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 572 ATGGAGCCACTCGCTGCAGTATTCAATTGGGTACTGTCAACAGTGCCCGGATAAGGTCAC 631
Query 645 GTGGCCAGAAGATATGGAATCTCCACCTCCTCCTCTGTATTTCAACGCCGGTATGTTTGT 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 632 GTGGCCAGAAGATATGGAATCTCCACCTCCTCCTCTGTATTTCAACGCCGGTATGTTTGT 691
Query 705 GTTTGAGCCTAGTCCTTTGACTTATGAGAGTCTCCTTCAGACCCTGGAGATCACACCACC 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 692 GTTTGAGCCTAGTCCTTTGACTTATGAGAGTCTCCTTCAGACCCTGGAGATCACACCACC 751
Query 765 TTCACCGTTTGCAGAACAAGATTTTCTCAATATGTTCTTTGAGAAAGTGTACAAACCGAT 824
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 752 TTCACCGTTTGCAGAACAAGATTTTCTCAATATGTTCTTTGAGAGAGTGTACAAACCGAT 811
Query 825 CCCTTTGGTATACAATCTGGTTTTGGCTATGCTTTGGCGTCACCCGGAGAACGTGGAGCT 884
|||| | || |||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 812 CCCTCTAGTTTACAATCTGGTTCTGGCTATGCTTTGGCGTCACCCAGAGAACGTGGAGCT 871
Query 885 GGAGAAAGTCAAAGTTGTTCACTACTGTGCAGCTGGATCCAAGCCATGGAGATACACAGG 944
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 872 GGAGAAAGTCAAAGTTGTTCACTACTGTGCAGCTGGATCCAAGCCATGGAGGTATACAGG 931
Query 945 AGAAGAAGCTAACATGGACAGAGAAGACATCAAGATGTTAGTTGATAAATGGTGGGATGT 1004
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 932 AGAAGAAGCTAACATGGACAGAGAAGACATCAAGATGTTAGTTGATAAATGGTGGGATGT 991
Query 1005 CTATAATGATGAATCTCTCGATTTCAAATCGAAAATCCCTGCAGATGCGGAAGAAACCGT 1064
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 992 CTATAATGATGAATCTCTCGATTTCAAATCGATAATCCCTGCAGATGCGGAAGAAACCGT 1051
Query 1065 TACAAAATCAAGCATCCTAGCTTCCGTTCTTGAACCAGAAATGACCTACTTTCCTGCTCC 1124
||||||||| |||||||||||||| || || ||||||||||| |||||||| || || ||
Sbjct 1052 TACAAAATCGAGCATCCTAGCTTCGGTACTCGAACCAGAAATTACCTACTTCCCAGCACC 1111
Query 1125 TTCTGCTGCTTGAGATATCTTGCAGGGAAGT-CACAAGACTTGGTGTGTTCCTCTATCTG 1183
||| |||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 1112 TTCCGCTGCTTGAGATGTCTTACAGGGAAGTGCACAAGACTTGGTGTGTTCCTCTATCTG 1171
Query 1184 TTTTCTTTTGATATATGTATACATAGTTTGAAATAGTATTAACCAGAAAATAGAAACCTT 1243
|||||||||||| ||| ||||||||||||||||||||| || |||||| ||||||||||
Sbjct 1172 TTTTCTTTTGATCTAT--ATACATAGTTTGAAATAGTAT-AAGCAGAAA-TAGAAACCTT 1227
Query 1244 GGTGAGTT-TTTTCTCGACCCGAGAGGTTTTCAAATAGTATTGCTAAAGTGTGTAAG-TG 1301
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1228 GGTGAGTCCTTTTCTCGACCCGAGAGGTTTTCAAATAGTATTGCTAAAGTGTGTAAGGTG 1287
Query 1302 TTAAAGTACTAAGGAAATGAAGTGTTTGTATTGCTATAT 1340
||||| ||||||||||||||||| |||||||||||||||
Sbjct 1288 TTAAATTACTAAGGAAATGAAGTATTTGTATTGCTATAT 1326
Score = 58.4 bits (31), Expect = 1e-07
Identities = 31/31 (100%), Gaps = 0/31 (0%)
Strand=Plus/Plus
Query 1 ACTCACAAGCCAAAGACCAAAGTAACTAAAA 31
|||||||||||||||||||||||||||||||
Sbjct 1 ACTCACAAGCCAAAGACCAAAGTAACTAAAA 31
> Ahg907432 jgi|Araly1|907432|Al_scaffold_0002_513
Length=993
Score = 887 bits (480), Expect = 0.0
Identities = 766/903 (85%), Gaps = 24/903 (3%)
Strand=Plus/Plus
Query 198 GAGAGCTTATGTGACGTTTTTGGCAGGAAATGGAGACTACGTGAAGGGAGTGGTGGGACT 257
|||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 57 GAGAGCATACGTGACGTTTTTGGCAGGAAATGGAGACTACGTGAAGGGAGTGGTGGGATT 116
Query 258 AGCAAAGGGTTTGCGTAAGGTCAAAAGTGCGTATCCTCTTGTTGTTGCTATGTTACCTGA 317
||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||
Sbjct 117 AGCAAAGGGTTTGCGGAAAGTCAAAAGTGCGTATCCTCTTGTTGTTGCTACGTTACCTGA 176
Query 318 TGTGCCTGAGGAACATAGAGAGATCTTGAGGTCTCAAGGCTGTGTCGTGCGTGAGATCGA 377
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 177 TGTGCCTGAGGAACATAGAGAGATCTTGAGGTCTCAAGGCTGCGTTGTGCGTGAGATCGA 236
Query 378 ACCTGTTTATCCTCCAGACAACCAAGTTG-AGTTTGCCATGGCTTATTACGTTCTCAACT 436
|||||| |||||||||| | ||||| || | | || | ||||||||||||| | ||||
Sbjct 237 GCCTGTTCATCCTCCAGATAGCCAAGATGCA-TACGCAAGGGCTTATTACGTTATTAACT 295
Query 437 ACTCAAAACTTCGTATTTGGAACTTTGAAGAGTACAGCAAGATGATATACCTT-GACGCA 495
|||| ||||| || |||||||||||||||||||||| ||||||| | ||| || || | |
Sbjct 296 ACTCCAAACTGCGAATTTGGAACTTTGAAGAGTACAACAAGATGGTTTAC-TTAGATGGA 354
Query 496 GATATTCAAGTCTTTGACAATATCGATCACCTCTTTGATTTGTCTGATG-CATATTT-CT 553
||||||||||||||||||||||||||| ||||||| |||||| |||| | ||| | |
Sbjct 355 GATATTCAAGTCTTTGACAATATCGATGACCTCTTCGATTTGGAAGATGGC-TATGTAC- 412
Query 554 ATGCCGTGATGGACT-GTTTCTGTGAGAAAACATGGAGC--CACTCGCTGCAGTATTCAA 610
||| |||| || | | ||||||||||||||| |||||| ||||| || | || || |
Sbjct 413 ATGGCGTGTTG-AGTTGTTTCTGTGAGAAAATATGGAGTTACACTC-CT-CTCTACTCGA 469
Query 611 TTGGGTATTGTCAACAGTGCCCGGAGAAGGTCACGTGGCCAGAAGATATGGAATCTCCAC 670
| || ||||||||| | || || |||||||||| |||||| | || ||| ||||| | |
Sbjct 470 TCGGTTATTGTCAATATTGTCCAGAGAAGGTCATGTGGCCGGCCGAAATGAAATCTGCTC 529
Query 671 CTCCTCCTCTGTATTTCAACGCCGGTATGTTTGTGTTTGAGCCTAGTCCTTTGACTTATG 730
|||||||| || ||||| || ||||||||||| |||||||||| ||||||||| ||||
Sbjct 530 GTCCTCCTCCATACTTCAATGCTGGTATGTTTGTCTTTGAGCCTAATCCTTTGACGTATG 589
Query 731 AGAGTCTCCTTCAGACCCTGGAGATCACACCACCTTCACCGTTTGCAGAACAAGATTTTC 790
||||||||||||| ||||| |||||||||| |||||||||||||| || ||||||||||
Sbjct 590 AGAGTCTCCTTCATACCCTCCAGATCACACCGCCTTCACCGTTTGCGGAGCAAGATTTTC 649
Query 791 TCAATATGTTCTTTGAGAAAGTGTACAAACCGATCCCTTTGGTATACAATCTGGTT-TTG 849
|||||||||||||||||||||| | |||||| || || ||| ||||| ||| || ||
Sbjct 650 TCAATATGTTCTTTGAGAAAGTTTTTAAACCGGTCTCTCCGGTTTACAACCTGATTCTTT 709
Query 850 GCTATGCTTTGGCGTCACCC-GGAGAACGTGGAGCT-GGAGAAAGTCAAAGTTGTTCACT 907
|| |||||||||| || || || ||| || || || ||||| ||||||||||||||| |
Sbjct 710 -CTGTGCTTTGGCGCCATCCTGG-GAATGTTGA-CTTGGAGAGAGTCAAAGTTGTTCATT 766
Query 908 ACTGTGCAGCTGGATCCAAGCCATGGAGATACACAGGAGAAGAAGCTAACATGGACAGAG 967
||||| || ||||||||||||||||||| ||||||||||||||| ||||||||||||| |
Sbjct 767 ACTGTCCACCTGGATCCAAGCCATGGAGGTACACAGGAGAAGAACCTAACATGGACAGGG 826
Query 968 AAGACATCAAGATGTTAGTT-GATAAATGGTGGGATGTCTATAATGATGAATCTCTCGAT 1026
||||| |||| |||||| || | |||||||||||| ||||||| || || ||||| |||
Sbjct 827 AAGACGTCAAAATGTTAATTAGG-AAATGGTGGGATATCTATAACGACGAGTCTCTTGAT 885
Query 1027 TTCAAATCGAAAATCCCTGCAGATGCGGAAGAAACCGTTACAAAATCAAGCATCC-TAGC 1085
|||||| |||||| |||||||||| ||||| |||| || | ||||||| || | ||||
Sbjct 886 TTCAAACCGAAAAACCCTGCAGATTTGGAAGCAACCCTTTCGAAATCAA-CAACTATAGC 944
Query 1086 TTC 1088
|||
Sbjct 945 TTC 947
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50246004606
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5