BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G60480.1
Length=955
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919852 jgi|Araly1|919852|scaffold_101133.1 248 5e-65
Ahg925013 jgi|Araly1|925013|scaffold_200574.1 200 1e-50
Ahg472612 jgi|Araly1|472612|fgenesh2_kg.1__2566__AT1G23490.1 171 1e-41
> Ahg919852 jgi|Araly1|919852|scaffold_101133.1
Length=586
Score = 248 bits (134), Expect = 5e-65
Identities = 144/149 (97%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 1 ATGGGGCTTTCATTTGCAAAGCTTTTCAGCAGGCTTTTCGCCAAGAAGGAGATGCGCATC 60
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 21 ATGGGGCTTTCATTTGCAAAGCTTTTCAGCCGGCTTTTCGCCAAGAAGGAGATGCGAATC 80
Query 61 CTTATGGTGGGTCTTGATGCTGCTGGTAAGACCACCATTTTGTACAAGCTCAAGCTTGGT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 CTTATGGTGGGTCTTGATGCTGCTGGTAAGACCACCATTTTGTACAAGCTCAAGCTTGGT 140
Query 121 GAGATTGTCACCACCATCCCCACCATTGG 149
|||||||| |||||||| || ||||||||
Sbjct 141 GAGATTGTTACCACCATTCCTACCATTGG 169
> Ahg925013 jgi|Araly1|925013|scaffold_200574.1
Length=436
Score = 200 bits (108), Expect = 1e-50
Identities = 110/111 (99%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 421 TGATGCAGTACTGCTTGTGTTTGCCAACAAACAGGATCTTCCAAACGCAATGAATGCTGC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 TGATGCAGTACTGCTTGTGTTTGCCAACAAACAGGATCTTCCAAACGCAATGAATGCTGC 295
Query 481 TGAAATAACTGATAAGCTTGGACTCCACTCTCTCCGGCAGCGTCACTGGTA 531
||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 296 TGAAATAACTGATAAGCTTGGACTCCACTCTCTCCGGCAACGTCACTGGTA 346
Score = 169 bits (91), Expect = 4e-41
Identities = 115/125 (92%), Gaps = 8/125 (6%)
Strand=Plus/Plus
Query 32 GGCTTTTCGCCAAGAAGGAGATGCGCATCCTTATGGT-GG--G-TCTTGATGCTGCTGGT 87
||||||| ||||||||||||||||||||||||||||| || | ||||||||||||||||
Sbjct 24 GGCTTTTTGCCAAGAAGGAGATGCGCATCCTTATGGTTGGTTGGTCTTGATGCTGCTGGT 83
Query 88 AAGACCACCATTTTGTACAAGCTCAAGCTTGGTGAGAT---T-GTCACCACCATCCCCAC 143
||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||
Sbjct 84 AAGACCACCATTTTGTACAAGCTCAAGCTCGGTGAGATCGATTGTCACCACCATCCCCAC 143
Query 144 CATTG 148
|||||
Sbjct 144 CATTG 148
Score = 100 bits (54), Expect = 2e-20
Identities = 56/57 (98%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 663 GTACGAAGGCCTGGACTGGCTCTCCAACAACATTGCTAACAAAGTAAGCACATTCTA 719
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GTACGAAGGTCTGGACTGGCTCTCCAACAACATTGCTAACAAAGTAAGCACATTCTA 415
> Ahg472612 jgi|Araly1|472612|fgenesh2_kg.1__2566__AT1G23490.1
Length=931
Score = 171 bits (92), Expect = 1e-41
Identities = 129/147 (88%), Gaps = 1/147 (1%)
Strand=Plus/Plus
Query 4 GGGCTT-TCATTTGCAAAGCTTTTCAGCAGGCTTTTCGCCAAGAAGGAGATGCGCATCCT 62
||| || ||||| || |||||||| ||| ||||||| ||||||| ||||||||| || ||
Sbjct 90 GGGTTTGTCATTCGCCAAGCTTTTTAGCCGGCTTTTTGCCAAGAGGGAGATGCGAATTCT 149
Query 63 TATGGTGGGTCTTGATGCTGCTGGTAAGACCACCATTTTGTACAAGCTCAAGCTTGGTGA 122
||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 150 CATGGTTGGTCTTGATGCTGCTGGTAAGACCACCATTTTGTACAAGCTCAAGCTCGGAGA 209
Query 123 GATTGTCACCACCATCCCCACCATTGG 149
|||||| |||||||| || || |||||
Sbjct 210 GATTGTAACCACCATTCCTACTATTGG 236
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35454312810
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5