BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G60490.1
Length=2790
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475282 jgi|Araly1|475282|fgenesh2_kg.2__412__AT1G60490.1 4165 0.0
Ahg899988 jgi|Araly1|899988|Al_scaffold_0004_638 291 3e-77
Ahg911453 jgi|Araly1|911453|Al_scaffold_0001_1707 230 6e-59
Ahg336703 jgi|Araly1|336703|fgenesh1_pg.C_scaffold_1003268 76.8 8e-13
> Ahg475282 jgi|Araly1|475282|fgenesh2_kg.2__412__AT1G60490.1
Length=2525
Score = 4165 bits (2255), Expect = 0.0
Identities = 2409/2484 (97%), Gaps = 7/2484 (0%)
Strand=Plus/Plus
Query 92 AAAAGCCCTAATTTTGATCGTCTAAATTTCATACATGGGTGCGAACGAGTTTCGTTTCTT 151
||||||||||||||||||| ||| || ||| ||||||||||||||||||||||||||||
Sbjct 48 AAAAGCCCTAATTTTGATCCTCT-AA-GTCACACATGGGTGCGAACGAGTTTCGTTTCTT 105
Query 152 CCTCTCCTGCGATATCAATTCGCCGGTCACTTTTCGTATCGAGAAGCTTGATGGAAACCT 211
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 106 CCTCTCCTGCGATATCAATTCGCCCGTCACTTTTCGTATAGAGAAGCTTGATGGAAACCT 165
Query 212 CCCCGTCAAGAAATCGTCTGATTCGGGAGTTGTCTCCATCGCAGAGGAGAAAAAACCAGA 271
||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 166 CCCCGTCAAGAAATCTTCTGATTCCGGAGTTGTCTCCGTCGCAGAGGAGAAAAAACCAGA 225
Query 272 GCTTTACATTGAGTGTGCATTGTACATTGATGGAGCTCCTTTTGGCCTTCCCATGAGAAC 331
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 226 GCTTTACATTGAATGTGCATTGTATATTGATGGAGCTCCTTTTGGCCTTCCCATGAGAAC 285
Query 332 AAGATTGAAAACTACAGGACCACCATACTGCTGGAACGAACTCATCACTCTCAGTTCTAA 391
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 286 AAGATTAAAAACTACAGGACCACCATACTGCTGGAACGAACTCATCACTCTCAGTTCTAA 345
Query 392 ATACCGGGACTTGACTGCCCATTCACAACTTGCGATTACAGTATGGGATGTTTCGTGTGG 451
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 346 ATATCGGGACTTGACTGCCCATTCACAACTTGCGATTACAGTATGGGATGTTTCGTGTGG 405
Query 452 CAAAACTGAGGGACTGATTGGTGGGGCAACAGTCCTTCTTTTTAACAGCAAGATGCAAAT 511
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 406 TAAAACTGAGGGACTGATTGGTGGGGCAACAGTCCTTCTATTTAACAGCAAGATGCAAAT 465
Query 512 GAAATCAGGGAAGCAGAAGCTAAGGCTCTGGCAGGGGAAAGAAGCGGATGGTTCATTTCC 571
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 466 GAAATCAGGAAAGCAGAAGCTCAGGCTCTGGCAGGGGAAAGAAGCGGATGGTTCATTTCC 525
Query 572 AACCTCTACTCCTGGAAAGGTTCCACGGCATGAGCGTGGAGAGCTAGAGCGTTTAGAGAA 631
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 526 AACCTCTACTCCTGGAAAGGTTCCACGGCATGAGCGCGGAGAGCTAGAGCGTTTAGAGAA 585
Query 632 GCTCATGAATAAGTATGAGAGGGGGCAGATTCAAAGCATAGATTGGCTGGATCGACTTAT 691
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 586 GCTCATGAATAAGTATGAGAGGGGGCAGATCCAAAGCATTGATTGGCTGGATCGACTTAT 645
Query 692 GTTGAAATCCTTGGATACGATTAAGGAGCAAGAAAGCACCAAACATGGAAGCTCACATCT 751
|||||||||||||||||| || ||||| ||||||||| ||||||||||||||||||||||
Sbjct 646 GTTGAAATCCTTGGATACTATCAAGGATCAAGAAAGCTCCAAACATGGAAGCTCACATCT 705
Query 752 GTTTGTGGTCATTGATTTCTGTAGTTTTGAACATCGGGTTGTATTTCAGGAGTCTGGAGC 811
||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 706 GTTCGTGGTTATTGATTTCTGTAGTTTTGAACATCGAGTTGTATTTCAGGAGTCTGGAGC 765
Query 812 CAATTTGTTCATAACTGCCCCAATAGGTTCAACAAATGAATTTGTTACTGTCTGGGATAC 871
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 766 CAATTTGTTCATAACTGCCCCAATAGGTTCAACAAATGAATTTGTTACCGTCTGGGATAC 825
Query 872 AGAACTGGGAAAGACTAATCCTTCAGAGAACAAGCAACTAAAGCTGGCAAGGAGCTTGGA 931
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 826 AGAACTGGGAAAGACTAATCCTTCAGAGAACAAACAACTAAAGCTGGCAAGGAGCTTGGA 885
Query 932 TCGTGGCATTATCGACAGGGATCTAAAGCCAAGTAATATCGAGCGGAAATCCATTCAAAG 991
||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 886 TCGCGGCATTATCGACAGGGATCTAAAGCCAAGTAATATCGAGCGGAAGTCCATACAAAG 945
Query 992 AGTTTTGAAATATCCGCCAACAAGGACATTGAGTGGAGATGAAAGACAACTTCTTTGGAA 1051
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 946 AGTTTTGAAATATCCGCCAACAAGGACATTGAGTGGAGATGAAAGACAACTTCTTTGGAA 1005
Query 1052 GTTTCGTTTCTCTCTAATGTCTGAAAAGAGAGCTCTAACAAAGTTTCTTCGTTGTGTGGA 1111
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1006 GTTTCGTTTCTCTCTAATGTCTGAAAAGAGAGCTCTAACAAAGTTTCTTCGCTGTGTGGA 1065
Query 1112 GTGGAGTGATGTTCAGGAAGCAAAGCAAGCAATTCAACTGATGTACAAATGGGAAATGAT 1171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1066 GTGGAGTGATGTTCAGGAAGCAAAGCAAGCAATTCAACTGATGTACAAATGGGAAATGAT 1125
Query 1172 AGATGTATGTGATGCTTTGGAGCTATTGTCTCCTCTATTTGAGAGTGAAGAGGTTCGAGC 1231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1126 AGATGTATGTGATGCTTTGGAGCTATTGTCTCCTCTATTTGAGAGTGAAGAGGTTCGAGC 1185
Query 1232 TTATGCTGTGAGTGTCCTGGAAAGAGCTGATGATGAAGAGCTTCAGTGTTACTTGCTTCA 1291
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1186 TTATGCTGTGAGTGTCCTGGAAAGAGCTGACGATGAAGAGCTTCAATGTTACTTGCTTCA 1245
Query 1292 ACTGGTTCAGGCTCTTCGTTTTGAACGCTCTGATAGATCTTGCCTTTCTCAATTCCTTGT 1351
||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1246 ACTGGTTCAGGCTCTCCGTTTTGAACGCTCCGATAGATCTTGTCTTTCTCAATTCCTTGT 1305
Query 1352 CCAGAGGGCATTACAGAATATTGAGTTGGCCAGTTTTCTTCGGTGGTATGTTGCTGTGGA 1411
||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1306 ACAGCGGGCATTACAGAATATTGAGTTGGCCAGTTTTCTTCGTTGGTATGTTGCTGTGGA 1365
Query 1412 ACTTCATGACCATGTCTATGCCAAGAGATTTTACAGTACATATGAGTTACTCGAGGAGAA 1471
||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||
Sbjct 1366 ACTTCATGACCATGTCTATGCCAAGCGATTTTACAGCACATATGAGTTACTTGAGGAGAA 1425
Query 1472 TATAATCAAGCTGCCGCCTGGTGTTAACGGCGAAGATGGATATCAATTGTGGCAAAGTTT 1531
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1426 TATAATCAAGCTGCCACCTGGTGTTAACGGCGAAGATGGATATCAATTGTGGCAGAGTTT 1485
Query 1532 GGTGCGCCAAACAGAACTGACTGCTCAGTTATGTTCCATTACACGAGAAGTGAGGAATGT 1591
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1486 GGTGCGCCAAACAGAATTGACTGCTCAGTTATGTTCCATTACACGAGAAGTGAGGAATGT 1545
Query 1592 ACGTGGAAACACCCAGaaaaaaaTTGAGAAGCTCAGGCAGCTTTTAGGTGGACTGCTTAG 1651
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1546 ACGTGGAAACACCCAGAAAAAAATTGAGAAGCTCAGGCAGCTATTAGGTGGACTCCTTAG 1605
Query 1652 CGAACTTACCTACTTCGAAGAGCCTATTCGATCACCGCTTACCCCTAATGTTCTCATAAA 1711
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1606 CGAACTTACCTACTTTGAAGAGCCTATTCGATCACCGCTTACCCCTAATGTTCTCATAAA 1665
Query 1712 GGGGATTGTGGCAGGAGAATCATCACTCTTTAAAAGTGCATTGCATCCTCTGCGCCTTAC 1771
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1666 GGGGATTGTGGCAGGAGAATCAACACTCTTTAAAAGTGCATTGCATCCTCTGCGCCTTAC 1725
Query 1772 TTTCCGAACACCAGAAGAAGGAGGAAGTTGCAAACTTA-TATTTAAGAAGGGAGATGATC 1830
||||||||||||||||||||| | |||||||| ||| |||||||||||||||||||||
Sbjct 1726 ATTCCGAACACCAGAAGAAGGA--A-GTTGCAAA-TTAATATTTAAGAAGGGAGATGATC 1781
Query 1831 TCCGGCAAGACCAACTGGTTGTTCAAATGGTTTGGCTCATGGATAGACTACTTAAGCTGG 1890
||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1782 TCCGGCAGGACCAACTGGTTGTTCAAATGGTTTGGCTCATGGATAGATTACTTAAGCTGG 1841
Query 1891 AAAATCTTGATCTATGCCTAACGCCTTATAAGGTGTTAGCAACTGGACATGACGAAGGGA 1950
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1842 AAAATCTTGATCTGTGCCTAACGCCTTATAAGGTGTTAGCAACTGGACATGATGAAGGAA 1901
Query 1951 TGTTGGAATTCATACCGTCCCGTTCTTTGGCTCAGATTCTCTCAGAGCACCGAAGCATAA 2010
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1902 TGTTGGAATTCATACCATCCCGTTCTTTGGCTCAGATTCTCTCAGAGCACCGAAGCATAA 1961
Query 2011 CAAGTTATCTGCAGAAGTTTCATCCTGATGAGCATGCACCTTTCGGGATAACAGCCACTT 2070
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1962 CAAGTTATCTGCAGAAGTTTCATCCTGATGAGCATGCGCCTTTCGGGATAACAGCCACTT 2021
Query 2071 GTCTTGATACATTTATAAAAAGTTGTGCGGGCTATTCTGTGATCACATATATACTTGGCA 2130
|||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
Sbjct 2022 GTCTGGATACATTTATAAAAAGCTGTGCAGGCTATTCTGTGATCACATATATACTTGGGA 2081
Query 2131 TTGGAGACAGACACCTGGACAACCTCCTCCTTACAGATGATGGTCGTCTGTTCCACGTTG 2190
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2082 TTGGAGACAGACACCTGGACAACCTCCTCCTTACAGATGATGGTCGTCTTTTCCACGTTG 2141
Query 2191 ATTTTGCTTTTATTCTCGGTAGAGATCCTAAACCATTCCCTCCACCTATGAAACTCTGCA 2250
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2142 ATTTCGCTTTTATTCTCGGTAGAGATCCTAAACCATTCCCTCCACCTATGAAACTCTGCA 2201
Query 2251 AAGAAATGGTGGAAGCCATGGGCGGAGCAGAAAGCCAATACTACACAAGGTTCAAATCCT 2310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2202 AAGAAATGGTGGAAGCCATGGGCGGAGCAGAAAGCCAATACTACACAAGGTTCAAATCCT 2261
Query 2311 ACTGTTGCGAAGCCTACAACATTCTCCGGAAATCGAGCAACCTTATTTTGAATCTGTTTC 2370
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2262 ACTGTTGTGAAGCCTACAACATTCTCCGGAAATCGAGCAACCTTATTTTGAATCTGTTTC 2321
Query 2371 ATCTCATGGCGGGTTCAACTATTCCCGATATAGCTTCAGACCCAGAAAAGGGCATTCTCA 2430
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2322 ATCTCATGGCGGGTTCAACTATTCCCGATATAGCTTCAGACCCGGAAAAGGGCATTCTCA 2381
Query 2431 AACTCCAAGAAAAGTTTAGGCTTGACATGGATGATGAAGCATGCATCCATTTCTTTCAAG 2490
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2382 AACTCCAGGAAAAGTTTAGGCTTGACATGGATGACGAAGCATGCATCCATTTCTTTCAAG 2441
Query 2491 ACCTGATTAATGAAAGCGTAAGTGCGCTGTTCCCGCAAATGGTTGAAACCATACACAGAT 2550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2442 ACCTGATTAATGAAAGCGTAAGTGCGCTGTTCCCGCAAATGGTTGAAACCATACACAGAT 2501
Query 2551 GGGCTCAATACTGGCGTTGAACCC 2574
||||||||||||||||||||||||
Sbjct 2502 GGGCTCAATACTGGCGTTGAACCC 2525
Score = 87.9 bits (47), Expect = 4e-16
Identities = 47/47 (100%), Gaps = 0/47 (0%)
Strand=Plus/Plus
Query 18 ACACATATTTTACGAATTCGAATTTCAAGTTTCCGATTCTCTAAATC 64
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ACACATATTTTACGAATTCGAATTTCAAGTTTCCGATTCTCTAAATC 47
> Ahg899988 jgi|Araly1|899988|Al_scaffold_0004_638
Length=180
Score = 291 bits (157), Expect = 3e-77
Identities = 171/178 (96%), Gaps = 0/178 (0%)
Strand=Plus/Plus
Query 126 ATGGGTGCGAACGAGTTTCGTTTCTTCCTCTCCTGCGATATCAATTCGCCGGTCACTTTT 185
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGGGTGCGAACGAGTTTCGTTTCTTCCTCTCCTGCGATATCAATTCGCCCGTCACTTTT 60
Query 186 CGTATCGAGAAGCTTGATGGAAACCTCCCCGTCAAGAAATCGTCTGATTCGGGAGTTGTC 245
||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 CGTGTCGAGAAGCTTGATGGAAACCTCCCCGTCAAGAAATCTTCTGATTCGGGAGTTGTC 120
Query 246 TCCATCGCAGAGGAGAAAAAACCAGAGCTTTACATTGAGTGTGCATTGTACATTGATG 303
||| ||| |||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 121 TCCGTCGTAGAGGAGAAAAAACCAGAGCTTTACATTGAATGTGCATTGTATATTGATG 178
> Ahg911453 jgi|Araly1|911453|Al_scaffold_0001_1707
Length=180
Score = 230 bits (124), Expect = 6e-59
Identities = 164/182 (90%), Gaps = 8/182 (4%)
Strand=Plus/Plus
Query 126 ATGGGTGCGAACGAGTTTCGTTTCTTCCTCTCCTGCGATATCAATTCGCCGGTCACTTTT 185
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGGGTGCGAACGAGTTTCGTTTCTTCCTCTCCTGCGATATCAATTCGCCCGTCACTTTT 60
Query 186 CGTATCGAGAAGCTTGATGGAAACCTCCCCGTCAAGAAATCGTCTGATTCGGGAGT-TGT 244
||| ||||||||||||||||||||||||| ||||||||||| |||||||||| || | |
Sbjct 61 CGTGTCGAGAAGCTTGATGGAAACCTCCCAGTCAAGAAATCTTCTGATTCGGTTGTCT-T 119
Query 245 CTCCATCGC-AGAGGAGAAAAAACCAGAGCTTTACATTGA--GTG--TGCATTGTACATT 299
|| | || | || ||||||||||||||||||||||||||| ||| ||||||||| |||
Sbjct 120 CTTCTTC-CTAGGGGAGAAAAAACCAGAGCTTTACATTGAATGTGCGTGCATTGTATATT 178
Query 300 GA 301
||
Sbjct 179 GA 180
> Ahg336703 jgi|Araly1|336703|fgenesh1_pg.C_scaffold_1003268
Length=492
Score = 76.8 bits (41), Expect = 8e-13
Identities = 45/47 (96%), Gaps = 0/47 (0%)
Strand=Plus/Plus
Query 237 GGAGTTGTCTCCATCGCAGAGGAGAAAAAACCAGAGCTTTACATTGA 283
|||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 446 GGAGTTATCTCCGTCGCAGAGGAGAAAAAACCAGAGCTTTACATTGA 492
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105281437180
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5