BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G60520.1 Length=764 Score E Sequences producing significant alignments: (Bits) Value Ahg925006 jgi|Araly1|925006|scaffold_200567.1 270 9e-72 Ahg338326 jgi|Araly1|338326|fgenesh1_pg.C_scaffold_2000425 195 6e-49 > Ahg925006 jgi|Araly1|925006|scaffold_200567.1 Length=1369 Score = 270 bits (146), Expect = 9e-72 Identities = 202/229 (88%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 372 GGATCTGGTAAAGGTGTATCATACACTCCCTTAACTCTCCATGTCAAGAAGGCTGATGTT 431 ||||||| |||||| || ||| ||||||| || || |||||||| ||||||| || |||| Sbjct 498 GGATCTGTTAAAGGCGTCTCAGACACTCCTTTGACCCTCCATGTGAAGAAGGATGGTGTT 557 Query 432 CCTGATCTTACATTGGTTGATCTCCCTGAGATAACTCGAGTTCCCGTGAATGGACAGACT 491 || ||||| ||||||||||||||||||| ||||||||||||| |||||||||||||| || Sbjct 558 CCCGATCTGACATTGGTTGATCTCCCTGGGATAACTCGAGTTTCCGTGAATGGACAGCCT 617 Query 492 CAAAACATCCATGCGAAAAATCTCCAAGG-TGATTATGAAGTACATCAAGCCACATGAAT 550 | || |||| ||| | | |||||| ||| ||||||||||||||||||||||| | |||| Sbjct 618 CGAACCATCTATGAG-CAGATCTCC-AGGATGATTATGAAGTACATCAAGCCAGAAGAAT 675 Query 551 CCATCATCCTCAATGTTCTGCCAGCGACAGTTGATTTCACAACTTGTGA 599 ||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 676 CCATCATCCTCAATGTTCTGCCAGCAACAGTTGATTTCACAACTTGTGA 724 Score = 222 bits (120), Expect = 3e-57 Identities = 151/166 (91%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 600 ACAAAACAGGGGAACGGACTCTGGCTGTGGTCACAAAGGTTGACATGGCTACTGAAGG-G 658 |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| | Sbjct 751 ACAAAACAGGGGAACGAACTCTGGCTGTGGTCACAAAGGTTGACATGGCTCCTGAAGGTG 810 Query 659 CTCGTGAAGAAAGTTACTGCAGATGAGGTGAGTATCGGAATTGGTTATGTATGTGTTAGA 718 || || ||||||| |||||||||||||||||||| ||| |||||||||| ||||||||| Sbjct 811 -TCCTGGAGAAAGTAACTGCAGATGAGGTGAGTATTGGACTTGGTTATGTCTGTGTTAGA 869 Query 719 AACCGGATAGGGGAGGAAATCTTTGAAGAAGCTCGTATGGAAGAAG 764 ||| |||| |||||||||| ||||||||||||||| | |||||||| Sbjct 870 AACAGGATTGGGGAGGAAACCTTTGAAGAAGCTCGAAGGGAAGAAG 915 > Ahg338326 jgi|Araly1|338326|fgenesh1_pg.C_scaffold_2000425 Length=1083 Score = 195 bits (105), Expect = 6e-49 Identities = 327/427 (77%), Gaps = 43/427 (10%) Strand=Plus/Plus Query 372 GGATCTGGTAAAGGTGTATCATACACTCCCTTAACTCTCCATGTCAAGAAGGCTGATGTT 431 ||||||||||| || || ||| | |||||| | || || ||||| |||||| || |||| Sbjct 427 GGATCTGGTAAGGGCGTCTCAGATACTCCCCTGACCCTACATGTTAAGAAGAATGGTGTT 486 Query 432 CCTGATCTT-ACATTGGTTGATCTCCCTGAG-ATAACTCGAGTTCCCGTGAATGGACAGA 489 |||||| || ||| ||||||||||||| | | ||||| || |||||||||||||||||| Sbjct 487 CCTGAT-TTGACAATGGTTGATCTCCCCG-GTATAACCCGTGTTCCCGTGAATGGACAGC 544 Query 490 CTCAAAACATCCATGCGAA-AAATCTCCAAGG-TGATTATGAAGTACATCAAGCCACATG 547 | |||||||| || ||| |||||| | || |||| |||||||||||| ||||||| | Sbjct 545 CAGAAAACATCTAT--GAACAAATCT-CTGGGATGATAATGAAGTACATCGAGCCACAAG 601 Query 548 AATCCATCATCCTCAATGTTCTGCCAGCGACAGTTGA-TT--TCA-C-----A---A--C 593 ||||||||||||||||||| ||| |||| ||||| || || || | | | | Sbjct 602 AATCCATCATCCTCAATGTCCTGTCAGCTACAGTCGACTTCACCACCTGTGAATCCATCC 661 Query 594 -T-TG--T-G---A----ACAAAACAGGGGAACGGACTCTGGCTGTGGTCACAAAGGTTG 641 | || | | | |||||||||||||||||||||||||||| || ||||| | || Sbjct 662 GTATGTCTCGACAAGTTGACAAAACAGGGGAACGGACTCTGGCTGTCGTGACAAAAGCTG 721 Query 642 ACATGGCTACTGAAGGGCTCGT-GAAGAAAGTTACTG-CAGATGAGGTGAGTATCGGAAT 699 |||||||| ||||||| ||| | || |||||| | || |||| || |||||||| ||| | Sbjct 722 ACATGGCTCCTGAAGGTCTCCTAGA-GAAAGTAA-TGGCAGACGACGTGAGTATTGGACT 779 Query 700 TGGTTATGTATGTGTTAGAAACCG-GATAGGGGAGGAAATCTT-TGAAGAAGCTCGTATG 757 ||||| || ||||| || ||||| | |||| || || | | | | |||||||| | ||| Sbjct 780 AGGTTACGTCTGTGTAAGGAACCGTG-TAGGTGATGAGA-CATATCAAGAAGCTAGGATG 837 Query 758 GAAGAAG 764 | |||| Sbjct 838 CATGAAG 844 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28172835663 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5