BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G60520.1
Length=764
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925006 jgi|Araly1|925006|scaffold_200567.1 270 9e-72
Ahg338326 jgi|Araly1|338326|fgenesh1_pg.C_scaffold_2000425 195 6e-49
> Ahg925006 jgi|Araly1|925006|scaffold_200567.1
Length=1369
Score = 270 bits (146), Expect = 9e-72
Identities = 202/229 (88%), Gaps = 3/229 (1%)
Strand=Plus/Plus
Query 372 GGATCTGGTAAAGGTGTATCATACACTCCCTTAACTCTCCATGTCAAGAAGGCTGATGTT 431
||||||| |||||| || ||| ||||||| || || |||||||| ||||||| || ||||
Sbjct 498 GGATCTGTTAAAGGCGTCTCAGACACTCCTTTGACCCTCCATGTGAAGAAGGATGGTGTT 557
Query 432 CCTGATCTTACATTGGTTGATCTCCCTGAGATAACTCGAGTTCCCGTGAATGGACAGACT 491
|| ||||| ||||||||||||||||||| ||||||||||||| |||||||||||||| ||
Sbjct 558 CCCGATCTGACATTGGTTGATCTCCCTGGGATAACTCGAGTTTCCGTGAATGGACAGCCT 617
Query 492 CAAAACATCCATGCGAAAAATCTCCAAGG-TGATTATGAAGTACATCAAGCCACATGAAT 550
| || |||| ||| | | |||||| ||| ||||||||||||||||||||||| | ||||
Sbjct 618 CGAACCATCTATGAG-CAGATCTCC-AGGATGATTATGAAGTACATCAAGCCAGAAGAAT 675
Query 551 CCATCATCCTCAATGTTCTGCCAGCGACAGTTGATTTCACAACTTGTGA 599
||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 676 CCATCATCCTCAATGTTCTGCCAGCAACAGTTGATTTCACAACTTGTGA 724
Score = 222 bits (120), Expect = 3e-57
Identities = 151/166 (91%), Gaps = 2/166 (1%)
Strand=Plus/Plus
Query 600 ACAAAACAGGGGAACGGACTCTGGCTGTGGTCACAAAGGTTGACATGGCTACTGAAGG-G 658
|||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 751 ACAAAACAGGGGAACGAACTCTGGCTGTGGTCACAAAGGTTGACATGGCTCCTGAAGGTG 810
Query 659 CTCGTGAAGAAAGTTACTGCAGATGAGGTGAGTATCGGAATTGGTTATGTATGTGTTAGA 718
|| || ||||||| |||||||||||||||||||| ||| |||||||||| |||||||||
Sbjct 811 -TCCTGGAGAAAGTAACTGCAGATGAGGTGAGTATTGGACTTGGTTATGTCTGTGTTAGA 869
Query 719 AACCGGATAGGGGAGGAAATCTTTGAAGAAGCTCGTATGGAAGAAG 764
||| |||| |||||||||| ||||||||||||||| | ||||||||
Sbjct 870 AACAGGATTGGGGAGGAAACCTTTGAAGAAGCTCGAAGGGAAGAAG 915
> Ahg338326 jgi|Araly1|338326|fgenesh1_pg.C_scaffold_2000425
Length=1083
Score = 195 bits (105), Expect = 6e-49
Identities = 327/427 (77%), Gaps = 43/427 (10%)
Strand=Plus/Plus
Query 372 GGATCTGGTAAAGGTGTATCATACACTCCCTTAACTCTCCATGTCAAGAAGGCTGATGTT 431
||||||||||| || || ||| | |||||| | || || ||||| |||||| || ||||
Sbjct 427 GGATCTGGTAAGGGCGTCTCAGATACTCCCCTGACCCTACATGTTAAGAAGAATGGTGTT 486
Query 432 CCTGATCTT-ACATTGGTTGATCTCCCTGAG-ATAACTCGAGTTCCCGTGAATGGACAGA 489
|||||| || ||| ||||||||||||| | | ||||| || ||||||||||||||||||
Sbjct 487 CCTGAT-TTGACAATGGTTGATCTCCCCG-GTATAACCCGTGTTCCCGTGAATGGACAGC 544
Query 490 CTCAAAACATCCATGCGAA-AAATCTCCAAGG-TGATTATGAAGTACATCAAGCCACATG 547
| |||||||| || ||| |||||| | || |||| |||||||||||| ||||||| |
Sbjct 545 CAGAAAACATCTAT--GAACAAATCT-CTGGGATGATAATGAAGTACATCGAGCCACAAG 601
Query 548 AATCCATCATCCTCAATGTTCTGCCAGCGACAGTTGA-TT--TCA-C-----A---A--C 593
||||||||||||||||||| ||| |||| ||||| || || || | | | |
Sbjct 602 AATCCATCATCCTCAATGTCCTGTCAGCTACAGTCGACTTCACCACCTGTGAATCCATCC 661
Query 594 -T-TG--T-G---A----ACAAAACAGGGGAACGGACTCTGGCTGTGGTCACAAAGGTTG 641
| || | | | |||||||||||||||||||||||||||| || ||||| | ||
Sbjct 662 GTATGTCTCGACAAGTTGACAAAACAGGGGAACGGACTCTGGCTGTCGTGACAAAAGCTG 721
Query 642 ACATGGCTACTGAAGGGCTCGT-GAAGAAAGTTACTG-CAGATGAGGTGAGTATCGGAAT 699
|||||||| ||||||| ||| | || |||||| | || |||| || |||||||| ||| |
Sbjct 722 ACATGGCTCCTGAAGGTCTCCTAGA-GAAAGTAA-TGGCAGACGACGTGAGTATTGGACT 779
Query 700 TGGTTATGTATGTGTTAGAAACCG-GATAGGGGAGGAAATCTT-TGAAGAAGCTCGTATG 757
||||| || ||||| || ||||| | |||| || || | | | | |||||||| | |||
Sbjct 780 AGGTTACGTCTGTGTAAGGAACCGTG-TAGGTGATGAGA-CATATCAAGAAGCTAGGATG 837
Query 758 GAAGAAG 764
| ||||
Sbjct 838 CATGAAG 844
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28172835663
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5