BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G60550.1
Length=1308
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475277 jgi|Araly1|475277|fgenesh2_kg.2__407__AT1G60550.1 1868 0.0
> Ahg475277 jgi|Araly1|475277|fgenesh2_kg.2__407__AT1G60550.1
Length=1222
Score = 1868 bits (1011), Expect = 0.0
Identities = 1149/1215 (95%), Gaps = 11/1215 (1%)
Strand=Plus/Plus
Query 34 TTTTTTCAATTGAAAAATGTATTATCACCACCATTGTCAAAGCCCATGCTCTAGAATCTT 93
||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1 TTTTTTCAATTAAAAAATGTATTATCATCACCATTGTCAAAGTCCATGCTCTAGAATCTT 60
Query 94 TGGTAGTCTTCATCATCTTTCTCTATCTCTCGTC-ATCCTATCCAATGGCGGATTCCAAT 152
|||| || || ||||||||||||| ||||||||| | ||||||||||||||||||||||
Sbjct 61 TGGTCGTTTTTATCATCTTTCTCTGTCTCTCGTCGA-CCTATCCAATGGCGGATTCCAAG 119
Query 153 GAGCTTGGCTCGGCGAGCCGACGACTCTCCGTCGTCACCAATCATCTCATCCCTATCGGA 212
|||||||||||||||||||| ||| |||||||||||||||| |||||||||||||| |||
Sbjct 120 GAGCTTGGCTCGGCGAGCCGGCGAATCTCCGTCGTCACCAACCATCTCATCCCTATTGGA 179
Query 213 TTCAGTCCAGCTCGTGCTGACTCAGTGGAACTCTGTAGTGCTTCGTCGATGGATGATAGA 272
|||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TTCAATCCAACTCGTGTTGACTCAGTGGAACTCTGTAGTGCTTCGTCGATGGATGATAGT 239
Query 273 TTCCATAAGGTTCACGGTGAAGTTCCGACCCACGAAGTCGTTTGGaaaaaaaCTGATTTC 332
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 240 TTCCATAAGGTTCACGGTGAAGTTCCGACCCACGAAGTCGTTTGGAAAAAAGCTGAGTTC 299
Query 333 TTTGGTGAAGGAGATAACAAGGAGTTTGTTGATATTATTTATGAGAAAGCCCTTGATGAA 392
|||| ||| |||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 300 TTTGTTGACGGAGATAATAAGGAGTTTGTTGACATTATTTATGAGAAAGCCCTTGATGAA 359
Query 393 GGCATTGCAAAGATTACTATAAACCGGCCAGAGAGAAGAAATGCGTTCCGGCCTCAGACT 452
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 360 GGCATTGCAAAGATTACTATAAATCGGCCAGAGAGAAGAAATGCGTTCCGGCCTCAGACT 419
Query 453 GTGAAGGAGCTTATGCGTGCGTTTAATGATGCTAGAGATGATAGCTCTGTAGGAGTCATC 512
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 420 GTGAAGGAGCTTATGCGTGCGTTTAATGATGCTAGAGATGACAGCTCTGTAGGAGTCATC 479
Query 513 ATACTCACCGGCAAGGGAACAAAAGCATTTTGCAGTGGTGGTGATCAGGCTTTGAGAACA 572
|||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 480 ATACTCACTGGCAAGGGAACAAAAGCATTTTGCAGTGGTGGTGATCAGGCGTTAAGAACA 539
Query 573 CAAGACGGGTATGCTGATCCCAATGACGTTGGCCGCCTTAATGTTCTTGATCTTCAGGTT 632
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 540 CAAGACGGTTATGCTGATCCCAATGATGTTGGCCGCCTTAATGTTCTTGATCTTCAGATT 599
Query 633 CAAATCCGCAGATTGCCAAAGCCAGTTATTGCAATGGTAGCTGGTTATGCTGTTGGAGGA 692
||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||
Sbjct 600 CAAATCCGCAGATTGCCAAAGCCAGTTATCGCGATGGTTGCTGGTTATGCTGTTGGAGGG 659
Query 693 GGACACATTTTGCACATGGTCTGCGATCTAACAATTGCAGCTGATAATGCGATTTTTGGT 752
||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 660 GGACATATCTTGCACATGGTCTGCGATCTAACAATTGCAGCTGATAATGCTATTTTTGGT 719
Query 753 CAAACGGGTCCTAAGGTTGGAAGTTTTGATGCTGGTTATGGAAGTTCCATCATGTCTCGT 812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 CAAACGGGTCCTAAGGTTGGAAGTTTTGATGCTGGTTATGGAAGTTCCATCATGTCTCGT 779
Query 813 CTGGTTGGTCCTAAAAAGGCACGAGAAATGTGGTTTATGACGAGGTTCTACACAGCTTCT 872
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CTGGTTGGTCCAAAAAAGGCACGAGAAATGTGGTTTATGACGAGGTTCTACACAGCTTCT 839
Query 873 GAAGCAGAGAAAATGGGACTTATCAATACAGTTGTACCGCTAGAGGAT-TTGGAGAAAGA 931
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 840 GAAGCAGAGAAAATGGGACTTATCAATACAGTTGTACCGCTAGAG-ATGTTGGAGAAAGA 898
Query 932 AACTGTGAAATGGTGCAGAGAAATCTTACGGAACAGTCCAACTGCAATCCGAGTACTTAA 991
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 899 AACTGTGAAATGGTGCAGAGAAATCTTACGGAACAGTCCAACTGCAATCCGAGTGCTTAA 958
Query 992 GGCAGCACTTAATGCAGTTGATGATGGCCATGCCGGCCTTCAGGGACTCGGTGGTGATGC 1051
||||||||| ||||| ||||| |||||||||||||| ||||||||||||||||| |||||
Sbjct 959 GGCAGCACTCAATGCTGTTGACGATGGCCATGCCGGACTTCAGGGACTCGGTGGCGATGC 1018
Query 1052 GACACTCTTATTCTATGGAACCGAAGAAGCTACTGAAGGGAGAACTGCTTATATGCACCG 1111
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||
Sbjct 1019 GACACTCTTATTCTATGGAACCGAAGAAGCTATTGAAGGAAGAACTGCTTATATGCAACG 1078
Query 1112 CCGACCACCGGACTTCTCTAAATTTCACCGGCGACCTTAAACACATTTCTAGCTCTGTTC 1171
|||||||||||||||||||||||||| ||||||||||||||| || ||||||||| ||||
Sbjct 1079 CCGACCACCGGACTTCTCTAAATTTCCCCGGCGACCTTAAACTCACTTCTAGCTCAGTTC 1138
Query 1172 AGGTGTTTTCATTAGAGCATTTGTTC-TCATTCCAATCCAAGTCTCttttttt-tttctt 1229
||||| |||||||| ||||||||| | ||||||||||||||||| ||||||| ||| ||
Sbjct 1139 AGGTGGTTTCATTACAGCATTTGT-CATCATTCCAATCCAAGTC-CTTTTTTCATTTGTT 1196
Query 1230 tt-tttt-ttt-cca 1241
|| |||| ||| |||
Sbjct 1197 TTGTTTTGTTTACCA 1211
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48911702511
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5