BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G60570.1
Length=1146
Score E
Sequences producing significant alignments: (Bits) Value
Ahg315293 jgi|Araly1|315293|fgenesh1_pm.C_scaffold_2000326 1088 0.0
Ahg952061 jgi|Araly1|952061|scaffold_3400005.1 69.4 5e-11
Ahg357124 jgi|Araly1|357124|fgenesh1_pg.C_scaffold_8000911 69.4 5e-11
> Ahg315293 jgi|Araly1|315293|fgenesh1_pm.C_scaffold_2000326
Length=1125
Score = 1088 bits (589), Expect = 0.0
Identities = 983/1165 (84%), Gaps = 59/1165 (5%)
Strand=Plus/Plus
Query 1 ATGAGCGACGATGAAGAGCCACCGCTGAAGAAGAATAAGCTGCCAGTAGAAGAACCAACC 60
|||| |||||||||||||||||| |||||||||||||| |||||| | ||||||||||
Sbjct 1 ATGAACGACGATGAAGAGCCACCACTGAAGAAGAATAAACTGCCA--A-TAGAACCAACC 57
Query 61 TTGATTCCTTCACTTCCAGAGGAGTTGATATTGAGTATCTTAGCCCGCGTCTCGAGATTG 120
|||| || |||||||||||| || |||||| |||||||||||||||| ||||| |||||
Sbjct 58 TTGAATCTTTCACTTCCAGAAGATTTGATAGTGAGTATCTTAGCCCGTGTCTCAAGATTT 117
Query 121 TCTTATCGATCTCTCTCCTTAGTCTGCAAGCGCTTCCACTCGCTCCTTACTTCAGGAGAG 180
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 118 TCTTATCGAAATCTCTCCTTAGTCTGCAAGCGCTTCCACTGGCTCCTTACTTCAGGGGAG 177
Query 181 ATTTACCGGTTCCGGTCACTATCAGGTTATACCGAGAATTGTCTCTATGTGTGCTTACGT 240
|| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 178 CTTCACCGGATCCGGTCACTATCAGGTTGTACCGAGAATTGTCTCTATGTGTGCTTACGT 237
Query 241 TTCTCTCATACTGGCCGTAGCCATCGCTGGTTCATGCTTCGTGAGAAGAACAAGTCAAGT 300
|||||||||| || || || || ||||||| | | | ||||||| |||||||||
Sbjct 238 TTCTCTCATAATGACCATATCCCTCGCTGGAAGAAG--AAG-AAGAAGAATAAGTCAAGT 294
Query 301 GGGTATGTTTTGGCACCAATCCCAATTT-CCCATTCTCCTTCTTTGCACGCG-TCGAGTA 358
||||||||||||| | ||||||| |||| ||||| ||||| ||| |||| | | | ||
Sbjct 295 GGGTATGTTTTGGAAACAATCCC-ATTTCCCCATCCTCCTCCTTCCCACG-GTTGGGGTC 352
Query 359 TCGTGGCGGTTGGTTCTAAAATCTACAAAATTGGCGGAGT-CA--T--GGATG--GATC- 410
||||||||||||||||||| || ||||| ||||||||| | || | || || | ||
Sbjct 353 TCGTGGCGGTTGGTTCTAATATTTACAACATTGGCGGA-TCCATCTACGGTTGTCGCTCA 411
Query 411 --TAGTGTTTCAATCCTAGACTGCTGGTCTCACAGGTGGCTCGAAGCTCCAAGCATGCAG 468
|||||| ||||||||||||||||||||| ||| ||||||| |||||||||||||||||
Sbjct 412 AATAGTGTCTCAATCCTAGACTGCTGGTCTAACACGTGGCTCAAAGCTCCAAGCATGCAG 471
Query 469 ATGGAACGG-GACCGCCCATCAGCCAATTTAATTGATGGAAAGATATACGTAACAGGAGG 527
| || ||| | ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 472 GTAGATCGGTG-TCGCCCATCAGCCAATTTCCTTGATGGAAAGATATACGTAACAGGAGG 530
Query 528 -C-TGTCACAGAGGCTCCTACAATCCATCAAAGTGGATGGAGGTTTTCGATCTAAAAACC 585
| || | | | | | | | ||| ||||| | | ||||||||||||||||| ||||||
Sbjct 531 CCATG-C-C--A-GTTACAAAAATGCATCACACTATATGGAGGTTTTCGATCTGAAAACC 585
Query 586 GAAACTTGGGAGCCTGTATTGTGCCGTTCAGATAGATTGACGTTCGAGAGTTATCATGAA 645
|||||||||||||||| ||| || |||||| ||| | | || ||||| || ||
Sbjct 586 AAAACTTGGGAGCCTGTGTTGAGCAGTTCAGGCAGA---A---T-GA-CGTTAT-AT-AA 635
Query 646 CGAACTAATAACTTA-TTGGTTGATGGAAAGCTATACATTTTTTGGGCTGATAAGGGTGT 704
|||||| ||| || || ||||||||||| |||||| || ||||| ||||||||||
Sbjct 636 --AACTAAGAACGTAGTT-GTTGATGGAAATCTATAC-GTTGTTGGG--AATAAGGGTGT 689
Query 705 GGTTTACAATCCCAAGGATGATACATGGGATAGTTTAGAAGTACCGGAGATGGATAT-GT 763
|||||||| |||||||||||||||||||||||||||| | |||||||||| || | |
Sbjct 690 TGTTTACAACCCCAAGGATGATACATGGGATAGTTTAG--G-ACCGGAGATGAATTTAG- 745
Query 764 GTTTGACATTGTTTTATTGTTGTGTGATAGAGAACGTGCTTTA-TGAttttttttACGAA 822
||| || || ||||| || |||||||||||||||||||||||| | ||| || |||||||
Sbjct 746 GTTCGAAATGGTTTTCTTCTTGTGTGATAGAGAACGTGCTTTACT-ATTATTATTACGAA 804
Query 823 GAACTTGATATCAAATGGTATGACACTAAGGCAAGAACTTGGAGAAGTTTGTTGAATGGT 882
||| | |||||||||||||||||||||||||||| | |||||||||||||| ||||||
Sbjct 805 GAA---GGTATCAAATGGTATGACACTAAGGCAAGATCCTGGAGAAGTTTGTTAAATGGT 861
Query 883 ATGAGAGAACTGCATAAGTTTGTTCGTCATGCCAGTGTTACGTTGGCGGATTATGGTGGG 942
|||||| |||||| |||||||| ||||||||||| ||||| |||||||||||||||||||
Sbjct 862 ATGAGAAAACTGCCTAAGTTTGCTCGTCATGCCAATGTTAGGTTGGCGGATTATGGTGGG 921
Query 943 AAAATGGTAATGTTTTGGGATAAGTTTGTGGCTTCTGGTGATGGTCTTGGCTTTCATAAA 1002
||||||| | | |||||||| ||||||||||||||||||| ||||| ||||| | | ||
Sbjct 922 AAAATGGCACTTTTTTGGGACAAGTTTGTGGCTTCTGGTGGTGGTCGTGGCTATGAGAAT 981
Query 1003 ACGATGATGTGGTGTGCGATGATTGCACTTGAAAGAAGTGATAGTGGAGAGATTTGGGGG 1062
| |||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 982 AGGATGATTTGGTGTGCGATGATTGCACTTGAAAGAAGTTATAGAGGAGAGATTTGGGGG 1041
Query 1063 AAGGTCGAGTGGTTTGGTCCAGTGCTTCCAAATCAAATTCCCCTGGAATATGCATTT-GA 1121
||||| |||||||||| | ||||||||||||||| |||||| |||||||| |||| ||
Sbjct 1042 AAGGTGGAGTGGTTTGATGCAGTGCTTCCAAATCCAATTCCTAAGGAATATG-ATTTTGA 1100
Query 1122 GTATGTCGGTTCTGTCAAAGTTTGA 1146
||||||||||| |||||| ||||||
Sbjct 1101 GTATGTCGGTTGTGTCAACGTTTGA 1125
> Ahg952061 jgi|Araly1|952061|scaffold_3400005.1
Length=1273
Score = 69.4 bits (37), Expect = 5e-11
Identities = 72/88 (82%), Gaps = 6/88 (7%)
Strand=Plus/Plus
Query 1005 GATGATGTGGTGTGC-GATGATTGCACTTGAAAGAAGTG--ATAGTGGAGAGATTTGGGG 1061
|||||| |||||||| || |||| | |||| || ||| | | | || ||||||||||||
Sbjct 956 GATGATTTGGTGTGCAGA-GATTTCGCTTG-AA-AAGCGCAACAATGAAGAGATTTGGGG 1012
Query 1062 GAAGGTCGAGTGGTTTGGTCCAGTGCTT 1089
||||||||||||||||| | | ||||||
Sbjct 1013 GAAGGTCGAGTGGTTTGATGCGGTGCTT 1040
> Ahg357124 jgi|Araly1|357124|fgenesh1_pg.C_scaffold_8000911
Length=2640
Score = 69.4 bits (37), Expect = 5e-11
Identities = 72/88 (82%), Gaps = 6/88 (7%)
Strand=Plus/Plus
Query 1005 GATGATGTGGTGTGC-GATGATTGCACTTGAAAGAAGTG--ATAGTGGAGAGATTTGGGG 1061
|||||| |||||||| || |||| | |||| || ||| | | | || ||||||||||||
Sbjct 2505 GATGATTTGGTGTGCAGA-GATTTCGCTTG-AA-AAGCGCAACAATGAAGAGATTTGGGG 2561
Query 1062 GAAGGTCGAGTGGTTTGGTCCAGTGCTT 1089
||||||||||||||||| | | ||||||
Sbjct 2562 GAAGGTCGAGTGGTTTGATGCGGTGCTT 2589
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42735789957
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5