BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G60600.2
Length=1742
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475272 jgi|Araly1|475272|fgenesh2_kg.2__402__AT1G60600.1 1845 0.0
> Ahg475272 jgi|Araly1|475272|fgenesh2_kg.2__402__AT1G60600.1
Length=1649
Score = 1845 bits (999), Expect = 0.0
Identities = 1205/1300 (93%), Gaps = 32/1300 (2%)
Strand=Plus/Plus
Query 335 AAGTGAATTTTGTTATGATCACGTCGTGGTTTTGATCTGACTCCACTTCCGTCGC---TA 391
||||| ||||||||||||| ||||||||| |||||||||| || || |||||||| ||
Sbjct 281 AAGTG-ATTTTGTTATGATTACGTCGTGGGTTTGATCTGATTCTACCTCCGTCGCTGATA 339
Query 392 A--CTCTCTTCGAAAGATTCGTGTT-AAA---AAAG----AAACCTGAAAATGGTGAATT 441
| | |||||||||||||||||||| ||| |||| |||| |||||||| ||||||
Sbjct 340 ATGCCCTCTTCGAAAGATTCGTGTTAAAAGGTAAAGTTCCAAACTTGAAAATGATGAATT 399
Query 442 TTGTTTCTCTCTGTGACATAAAGTATGGGTTTGTGCCCAAAAATTCAACTGATTTGTTTG 501
||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 400 TTGGTTCTCTCTGTGACATAAATTATGGGTTTGTGCCCAAAAAGTCAACTGATTTGTTTG 459
Query 502 TGAAACGGAAAATTCACAAGCTTCCCAGCAGAGGAGATGTAATCACTAGATTACCGGTGT 561
|||||| |||||||||| | ||||||||||||| |||||| |||||||||||||
Sbjct 460 TGAAACAGAAAATTCAC-A-------AGCAGAGGAGATGGAATCACAAGATTACCGGTGT 511
Query 562 TTGGTTCGAATGCACGAGAGAATCTGAATGCTAAACCAAGAAGAAACCTTAGAGTTAGGC 621
||||||| |||||| | | |||||||||||||||| ||||||| |||||||||||| |||
Sbjct 512 TTGGTTCAAATGCATGGGTGAATCTGAATGCTAAAACAAGAAGTAACCTTAGAGTTGGGC 571
Query 622 CAATCTTTTGTAAGAGTTATGGAGATGCAGCA-AAGGTTTACCAAGAAGAGGAGATTCCC 680
|||||||||||||||| ||||||||| ||||| || ||||||||||||||||| ||||||
Sbjct 572 CAATCTTTTGTAAGAGCTATGGAGATACAGCAGAA-GTTTACCAAGAAGAGGAAATTCCC 630
Query 681 AGAGCAAAATTGATATGGAGAGCAATCAAACTACCAATGTACTCTGTCGCTTTAGTTCCT 740
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 631 AGAGAAAAATTGATATGGAGAGCAATCAAACTACCCATGTACTCTGTCGCTTTAGTTCCT 690
Query 741 CTTACCGTTGGCGCTTCAGCGGCCTATTTAGAGACGGGTTT-GTTCTTAGCTAGACGTTA 799
||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 691 CTTACCGTTGGTGCTTCAGCGGCCTATTTAGAGACGGGTTTCTTTC-TAGCTAGACGTTA 749
Query 800 TGTTAC-TCTATTGCTCTCATCAATTCTTATCATTACTTGGCTCAACCTAAGCAATGATG 858
|||||| | || |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 750 TGTTACAT-TAATGCTCTCATCAATTCTTATCATTACTTGGCTCAACCTAAGTAATGATG 808
Query 859 TTTATGATTTTGATACCGGAGCTGATAAGAACAAAATGGAATCAGTAGTAAATCTGGTTG 918
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 809 TTTATGATTTTGATACCGGAGCTGATAAGAACAAAAAGGAATCAGTAGTAAATCTGGTTG 868
Query 919 GAAGCCGGACAGGAACCTTAGCCGCTGCAATCACATCGCTAGCGCTTGGTGTTTCTGGTC 978
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 869 GAAGCCGGACAGGAACCTTAGCCGCTGCAATCACATCGCTCGCGCTTGGTGTTTCTGGTC 928
Query 979 TAGTTTGGACATCGTTAAATGCAAGTAATATCCGTGCAATACTATTGCTAGCCTCAGCAA 1038
||||||||||||| || |||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 929 TAGTTTGGACATCTTTGAATGCAAGTAATATCCGTGCGATACTATTGCTGGCCTCAGCAA 988
Query 1039 TACTCTGTGGCTACGTATACCAGTGTCCGCCATTTCGGTTAAGTTACCAAGGATTAGGAG 1098
||||||| ||||| || ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 989 TACTCTGCGGCTATGTGTACCAGTGTCCACCATTTCGGTTAAGTTACCAAGGATTAGGAG 1048
Query 1099 AGCCTCTATGCTTTGCAGCATTTGGTCCATTTGCTACTACTGCTTTTTATCTACTTCTTG 1158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1049 AGCCTCTATGCTTTGCAGCATTTGGTCCATTTGCTACTACTGCTTTTTATCTACTTCTTG 1108
Query 1159 GTAGCTCAAGCGAGATGAGGCATCTTCCGCTAAGCGGTAGGGTCCTTTCATCATCTGTCC 1218
||||||||||||||||||||||||||| | ||||||||||||||||||| |||||| |||
Sbjct 1109 GTAGCTCAAGCGAGATGAGGCATCTTCGGTTAAGCGGTAGGGTCCTTTCCTCATCTCTCC 1168
Query 1219 TTGTTGGTTTTACTACATCTCTTATCCTTTTCTGCAGCCACTTTCATCAGGTGGATGGAG 1278
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1169 TTGTTGGTTTTACTACATCTCTCATCCTTTTCTGCAGCCACTTTCATCAGGTGGATGGAG 1228
Query 1279 ATTTAGCTGTGGGGAAATATTCACCTCTGGTTCGGTTAGGGACTGAAAAAGGAGCTTTTG 1338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1229 ATTTAGCTGTGGGGAAATATTCACCTCTGGTTCGGTTAGGGACTGAAAAAGGAGCTTTTG 1288
Query 1339 TTGTGAGATGGACTATTCGTTTACTATATTCAATGCTTCTTGTTCTTGGTTTAACCAGGA 1398
||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 1289 TTGTGAGATGGGCTATTCGTTTGCTATATTCAATGCTTCTTGTTCTTGGTTTAAGCAGGA 1348
Query 1399 TTTTGCCACTACCTTGCAC-CTTGATGTGCTTCCTGACATTACCAGTTGGGAATTTGGTT 1457
||||||||||||||||||| || |||||| ||||||||||||||| ||||||||||||||
Sbjct 1349 TTTTGCCACTACCTTGCACACT-GATGTGTTTCCTGACATTACCAATTGGGAATTTGGTT 1407
Query 1458 TCAAGCTACGTTGAAAAGCACCACAAGGATAATGGGAAGATATTCATGGCCAAGTATTAC 1517
|||| ||| || ||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 1408 TCAAACTATGTCGAAAAGCACCACAAGGAAAATGGGAAGATATTCGTGGCCAAGTATTAC 1467
Query 1518 TGTGTGAGACTCCACGCCTTGCTTGGAGCCGCATTGTCGTTGGGGCTAGTTATCGCGCGC 1577
||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||| |||
Sbjct 1468 TGTGTGAGACTCCACGCATTGTTTGGAGCCGCATTGTCGTTGGGACTAGTTATCGCTCGC 1527
Query 1578 TAGAAAT-CAGTCACCAAACATTTGTTTCTCTCTTTAGCC 1616
|| || | || | ||||||||||||||| |||||||||||
Sbjct 1528 TA-AATTTCACTTACCAAACATTTGTTTTTCTCTTTAGCC 1566
Score = 254 bits (137), Expect = 2e-66
Identities = 235/276 (85%), Gaps = 31/276 (11%)
Strand=Plus/Plus
Query 1 ACGTGATTTTATCTTCCAACGAGGGAGCTTCTGTTATCCACTTCATCA--TTCACGTCTC 58
|||||||||||||||| ||||| |||||| ||||||||||||||||| ||| |||||
Sbjct 1 ACGTGATTTTATCTTCTAACGA--GAGCTTGTGTTATCCACTTCATCAGCCTCATGTCTC 58
Query 59 TTCCGCAAAACCCAACATTCAAATTCTTGTCTGAATAA-CGAAATCCCAACATTTGCATT 117
|||||||||||||||||||||||||||||||||||||| | |||||| |||||| |||||
Sbjct 59 TTCCGCAAAACCCAACATTCAAATTCTTGTCTGAATAAAC-AAATCCAAACATTGGCATT 117
Query 118 GCATAGATTCCTTCACAAA-TCCTCTGATTCTGATTCTGGTCACTCAATTTTGCCTGTTT 176
||||||||||||||| ||| |||||||||||||||||| ||||||||||| | ||
Sbjct 118 GCATAGATTCCTTCA-AAAGTCCTCTGATTCTGATTCTAGTCACTCAATT---C-TG--- 169
Query 177 ATTGGCATAATTCGGG-CAC-TTTTCTCTCAGTTTTTGTATAAGGTTCAATGAGTTTGTT 234
| ||||||| ||| ||| |||| ||||||||||||||||| ||||| |||||| |
Sbjct 170 A----CATAATT-GGGACACGTTTT-TCTCAGTTTTTGTATAAAGTTCATTGAGTT-G-- 220
Query 235 CTGTACTTCTGTGTGCGTTATCTTCTCCAAATTAAG 270
|| | |||||||||||||||||| |||||||||
Sbjct 221 --GT-C--CTGTGTGCGTTATCTTCTTCAAATTAAG 251
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65362860420
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5